genome.fa.s223.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  79  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12796388--12796440	26	2.0	26	92	0	88	28	24	22	24	2.00
12797157--12797209	26	2.0	26	92	0	88	28	24	18	28	1.98
12797183--12799688	878	2.8	870	85	3	3313	26	25	23	24	2.00
12801362--12801387	4	6.5	4	100	0	52	0	26	73	0	0.84
12800292--12808111	851	9.0	873	84	6	8659	25	23	24	25	2.00
12802907--12802959	26	2.0	26	92	0	88	24	18	26	30	1.98
12805511--12805561	26	2.0	26	100	0	102	27	15	27	29	1.96
12806389--12806441	26	2.0	26	92	0	88	28	20	22	28	1.99
12811349--12811399	26	2.0	26	92	0	84	27	15	25	31	1.96
12811739--12811788	26	1.9	26	87	0	73	30	18	24	28	1.97
12811045--12811800	387	2.0	380	83	7	968	26	26	23	23	2.00
12813381--12813433	26	2.0	26	88	0	79	28	20	26	24	1.99
12811825--12818256	912	7.2	903	82	6	7350	25	23	24	26	2.00
12815119--12815170	26	2.0	26	92	3	88	28	21	23	26	1.99
12816033--12816085	26	2.0	26	92	0	88	28	18	24	28	1.98
12814258--12818256	896	4.5	893	85	4	5046	25	23	24	25	2.00
12818620--12818672	26	2.0	26	92	0	88	26	20	26	26	1.99
12817462--12819338	800	2.4	794	90	2	2857	25	24	25	23	2.00
12820142--12820194	26	2.0	26	96	0	97	28	20	24	26	1.99
12821835--12821887	26	2.0	26	92	0	88	26	16	26	30	1.97
12823652--12823702	26	2.0	26	96	0	93	29	13	27	29	1.94
12824551--12824603	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12821181--12825475	899	4.8	896	84	5	5409	25	23	24	26	2.00
12824822--12827037	805	2.8	805	93	1	3676	25	23	24	26	2.00
12827047--12827099	26	2.0	26	88	0	79	28	16	24	30	1.97
12828848--12828898	26	2.0	26	96	0	93	29	13	27	29	1.94
12829749--12829801	26	2.0	26	100	0	106	26	20	26	26	1.99
12826400--12835735	902	10.4	902	84	5	11209	25	23	24	26	2.00
12831520--12831624	26	4.0	26	96	0	192	27	20	24	26	1.99
12832474--12832526	26	2.0	26	96	0	97	28	20	24	26	1.99
12833377--12833426	26	1.9	26	95	0	91	28	14	30	28	1.95
12834271--12834320	26	1.9	26	95	0	91	28	20	24	28	1.99
12835141--12835190	26	1.9	26	95	0	91	28	20	24	28	1.99
12835890--12835942	26	2.0	26	88	0	79	30	18	24	26	1.98
12836666--12836717	26	2.0	26	88	0	77	25	19	25	30	1.98
12836054--12838485	900	2.7	897	87	2	3477	25	23	23	26	2.00
12839177--12839258	26	3.2	26	92	3	139	26	18	21	32	1.97
12840091--12840143	26	2.0	26	92	0	88	28	16	26	28	1.97
12838436--12841934	905	3.9	900	85	4	4403	25	24	24	26	2.00
12842973--12843117	76	1.9	77	92	1	247	20	13	23	42	1.88
12843037--12847051	877	4.6	874	83	6	4796	25	24	24	25	2.00
12846114--12846166	26	2.0	26	92	0	88	28	18	24	28	1.98
12848540--12848595	26	2.2	26	96	0	103	26	17	25	30	1.97
12848566--12848942	159	2.4	159	83	2	463	22	27	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12849597--12849649	26	2.0	26	88	0	79	26	18	26	28	1.98
12850494--12850546	26	2.0	26	88	0	79	26	18	28	26	1.98
12852603--12852654	26	2.0	26	96	0	95	26	17	23	32	1.96
12854763--12854813	26	2.0	26	100	0	102	27	25	19	27	1.99
12853945--12858741	867	5.5	883	84	6	5059	25	25	23	25	2.00
12854787--12858736	892	4.5	874	86	5	5118	25	25	24	24	2.00
12858763--12858793	12	2.6	12	100	0	62	12	29	19	38	1.89
12860805--12860857	26	2.0	26	89	7	81	30	24	16	28	1.97
12861717--12861769	26	2.0	26	92	0	88	26	22	20	30	1.98
12863457--12863508	26	2.0	26	92	3	88	25	26	21	26	1.99
12859171--12869650	875	11.9	871	82	7	11153	25	24	23	25	2.00
12866094--12866146	26	2.0	26	96	0	97	28	26	18	26	1.98
12868711--12868763	27	2.0	27	88	0	79	30	26	16	26	1.97
12869593--12869676	26	3.2	26	98	1	159	27	26	20	26	1.99
12870250--12870302	26	2.1	25	92	3	88	28	22	18	30	1.98
12871128--12871180	26	2.0	26	92	7	90	28	26	16	28	1.97
12869808--12883794	893	15.4	898	76	9	11825	25	24	24	25	2.00
12875546--12875598	26	2.0	26	88	0	79	30	24	16	28	1.97
12876020--12876077	26	2.2	27	84	3	73	58	12	8	20	1.59
12876440--12876492	26	2.0	26	86	13	74	30	22	18	28	1.98
12877344--12877396	26	2.0	26	96	0	97	26	24	20	28	1.99
12878114--12878309	101	1.9	101	82	0	239	20	32	31	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12878338--12878387	26	1.9	26	95	0	91	24	30	18	28	1.97
12879241--12879293	26	2.0	26	100	0	106	26	26	20	26	1.99
12880131--12880183	26	2.0	26	92	0	88	30	24	18	26	1.98
12879972--12880397	185	2.3	185	84	0	557	23	25	27	23	2.00
12880316--12880368	26	2.0	26	92	0	88	28	22	20	28	1.99
12881185--12881237	26	2.0	26	92	0	88	28	24	20	26	1.99
12882082--12882134	26	2.0	26	92	0	88	26	22	20	30	1.98
12880782--12883781	897	3.3	894	86	2	4268	26	25	23	25	2.00
12883071--12884496	730	2.0	729	88	1	2147	26	23	23	26	2.00
12886336--12886388	26	2.0	26	92	0	88	26	22	20	30	1.98
12887806--12887857	26	2.0	26	92	0	86	30	19	23	26	1.98
12894932--12894984	26	2.0	26	89	7	81	32	18	26	22	1.97
12896713--12896765	26	2.0	26	96	0	97	28	20	24	26	1.99
12900252--12900304	26	2.0	26	96	0	97	26	18	26	28	1.98
12895836--12920982	895	28.1	898	79	9	23463	25	24	24	25	2.00
12902993--12903043	26	2.0	26	100	0	102	27	19	29	23	1.98
12907373--12907424	26	2.0	26	88	0	77	32	19	23	25	1.97
12908274--12908329	26	2.2	26	90	0	85	28	23	19	28	1.98
12910076--12910129	27	2.0	27	100	0	108	25	18	25	29	1.98
12909189--12920982	906	13.1	901	79	9	11744	25	24	24	25	2.00
12910979--12911031	26	2.0	26	92	0	88	28	20	22	28	1.99
12912744--12912794	26	2.0	26	100	0	102	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12913647--12913699	26	2.0	26	92	0	88	28	18	24	28	1.98
12917034--12917091	26	2.2	27	90	3	91	25	20	24	29	1.99
12917301--12917350	26	1.9	26	87	0	73	28	22	24	26	1.99
12918206--12918256	26	2.0	26	92	0	84	29	13	25	31	1.94
12920908--12920960	26	2.0	26	92	0	88	26	18	28	26	1.98
12922505--12922557	26	2.0	26	92	0	88	28	18	24	28	1.98
12923992--12924044	26	2.0	26	88	0	79	26	20	22	30	1.98
12924893--12924943	26	2.0	26	84	7	68	27	19	25	27	1.99
12923667--12926719	899	3.4	898	87	2	4259	25	24	24	25	2.00
12925792--12925844	26	2.0	26	89	7	81	28	16	26	28	1.97
12927389--12927441	26	2.0	26	92	7	90	28	18	26	26	1.98
12929186--12929238	26	2.0	26	85	0	70	30	20	18	30	1.97
12926795--12930433	907	4.1	891	86	4	4932	25	23	24	25	2.00
12930232--12930632	201	2.0	197	85	1	541	25	20	30	23	1.98
12931709--12932075	184	2.0	182	88	1	536	22	34	24	18	1.96
12932057--12932109	26	2.0	26	85	0	70	26	15	26	32	1.95
12933580--12933632	26	2.0	26	92	0	88	28	18	26	26	1.98
12934026--12934099	32	2.3	32	90	0	121	18	39	24	17	1.92
12934098--12934147	26	1.9	26	91	0	82	26	22	18	34	1.96
12934999--12935051	26	2.0	26	85	0	70	28	22	18	30	1.98
12937458--12937510	26	2.0	26	96	0	97	26	24	20	28	1.99
12939207--12939259	26	2.0	26	88	0	79	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12938501--12942821	892	4.9	888	84	6	5500	25	24	23	25	2.00
12941855--12941907	26	2.0	26	96	0	97	26	24	20	28	1.99
12940080--12942821	906	3.1	894	86	5	3647	24	24	24	25	2.00
12942748--12942796	26	1.9	26	91	4	82	26	26	16	30	1.97
12942664--12942989	169	1.9	169	85	3	442	19	27	26	25	1.99
12943800--12943850	26	2.0	26	96	0	93	29	25	17	27	1.98
12944697--12944749	26	2.0	26	96	0	97	26	24	20	28	1.99
12947325--12947377	26	2.0	26	96	0	97	26	24	20	28	1.99
12945078--12948097	910	3.3	895	87	3	4212	25	24	24	24	2.00
12948875--12948927	26	2.0	26	96	0	97	26	24	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190