genome.fa.s223.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  164  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26630954--26631083	44	3.0	43	76	8	120	50	6	6	36	1.54
26631003--26631085	22	3.8	22	80	0	85	46	4	6	42	1.49
26630915--26631083	88	1.9	88	79	7	191	49	5	7	36	1.56
26631167--26631217	22	2.3	22	82	0	66	45	0	11	43	1.40
26631176--26631230	22	2.5	22	84	0	65	41	1	14	41	1.56
26631598--26631756	21	7.6	21	74	12	130	51	10	2	35	1.50
26631598--26631756	63	2.5	63	78	13	184	51	10	2	35	1.50
26631599--26631756	42	3.8	42	75	15	148	51	10	2	35	1.50
26632299--26632431	66	2.0	66	94	0	230	48	11	8	31	1.68
26633352--26633432	26	3.1	26	85	3	110	43	16	19	20	1.88
26633605--26633818	22	9.4	22	72	14	71	50	1	2	45	1.23
26633699--26633818	44	2.7	44	76	14	138	50	0	2	46	1.20
26633715--26633821	33	3.2	33	75	10	92	47	0	2	48	1.22
26633626--26633837	33	6.2	31	67	17	86	50	2	2	44	1.27
26633938--26633968	14	2.3	14	94	5	55	61	0	3	35	1.12
26634102--26634159	19	3.0	20	80	10	66	79	3	0	17	0.87
26634105--26634159	20	2.8	19	83	5	74	80	3	0	16	0.86
26634112--26634153	10	3.9	11	84	15	61	80	2	0	16	0.81
26635102--26635133	13	2.5	13	94	0	55	28	37	28	6	1.81
26635303--26635353	23	2.2	23	80	19	61	62	5	0	31	1.19
26635304--26635353	24	2.1	24	85	14	68	64	6	0	30	1.18
26646792--26646825	16	2.2	15	89	5	50	85	0	8	5	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26647551--26648078	48	10.9	48	80	8	552	29	13	21	35	1.92
26647553--26648075	146	3.6	142	81	8	570	29	13	21	35	1.92
26647553--26648081	97	5.5	95	80	6	523	29	13	21	35	1.92
26648240--26648309	20	3.5	20	76	5	70	68	11	2	17	1.31
26650661--26650700	12	3.6	12	74	19	50	60	0	0	40	0.97
26650660--26650709	21	2.4	21	86	3	75	56	4	0	40	1.18
26651788--26651817	15	1.9	16	93	6	53	63	13	0	23	1.29
26652771--26652807	17	2.1	18	95	5	67	70	8	5	16	1.30
26657311--26657467	52	3.0	52	83	1	190	26	25	7	40	1.82
26657492--26657544	11	4.8	11	78	0	61	50	24	1	22	1.59
26661652--26661704	11	4.6	11	77	9	61	15	1	1	81	0.87
26661720--26661770	25	2.0	27	84	7	70	74	0	3	21	0.98
26672427--26672827	43	9.4	43	79	5	327	45	14	11	27	1.80
26672424--26672828	128	3.2	126	80	8	419	45	14	11	27	1.80
26672423--26672827	84	4.7	86	77	7	319	45	14	12	27	1.81
26672407--26672835	171	2.5	171	83	5	501	44	15	12	27	1.82
26673260--26673314	20	2.8	20	82	0	74	32	10	14	41	1.81
26674368--26674432	28	2.4	27	80	10	69	10	13	3	72	1.23
26680312--26680360	25	2.0	24	84	11	64	20	2	4	73	1.10
26686795--26686856	4	16.2	4	74	15	51	72	1	4	20	1.12
26686816--26686856	20	2.1	19	90	4	64	73	0	2	24	0.96
26687492--26687670	88	2.0	87	81	1	205	45	15	10	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26687727--26687781	22	2.5	22	71	11	58	32	9	21	36	1.85
26687921--26687992	31	2.3	31	81	13	85	30	20	12	36	1.90
26688262--26688455	70	2.7	71	84	0	228	41	17	13	26	1.87
26690336--26690369	9	3.6	9	85	14	50	38	0	2	58	1.13
26690804--26690883	3	27.0	3	94	2	144	31	0	1	67	0.99
26690782--26690875	18	5.6	17	86	8	115	31	0	2	65	1.04
26691071--26691111	14	3.0	13	83	13	55	78	2	0	19	0.87
26691279--26691314	14	2.6	14	90	0	54	72	0	2	25	0.98
26691438--26691470	17	1.9	17	88	11	50	45	6	0	48	1.27
26691600--26691718	50	2.4	50	81	5	125	43	11	9	35	1.73
26694231--26694267	17	2.2	17	90	9	58	59	8	10	21	1.56
26699036--26699060	11	2.3	11	100	0	50	92	0	8	0	0.40
26699036--26699071	16	2.2	16	90	9	56	88	0	11	0	0.50
26698964--26699206	133	1.8	136	84	6	343	55	7	15	20	1.64
26699168--26699206	10	3.8	10	86	3	51	87	7	5	0	0.68
26699753--26699905	83	1.8	83	84	2	209	38	20	11	29	1.87
26700351--26700593	86	2.8	86	84	0	299	34	15	13	36	1.87
26700583--26700616	12	2.8	12	86	0	50	35	20	2	41	1.68
26701263--26701498	105	2.2	105	85	5	325	34	13	16	35	1.88
26701471--26701595	65	1.9	65	85	3	171	37	14	12	35	1.84
26701687--26701711	5	5.0	5	100	0	50	80	20	0	0	0.72
26701673--26701721	15	3.3	14	80	11	53	79	16	2	2	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26702145--26702412	145	1.8	144	84	3	358	33	11	10	44	1.76
26702145--26702474	145	2.3	143	81	5	351	33	12	11	42	1.79
26702202--26702542	145	2.4	144	80	4	348	31	13	11	42	1.81
26703321--26703359	20	2.0	20	89	0	60	58	7	20	12	1.58
26709423--26709504	27	3.2	26	67	22	66	34	12	12	41	1.80
26709384--26709509	49	2.6	49	89	0	189	34	13	11	41	1.80
26713209--26713325	60	1.9	61	81	11	143	41	4	13	40	1.64
26713502--26713630	60	2.1	60	78	7	136	40	4	14	40	1.67
26716863--26716897	3	11.7	3	100	0	70	68	0	0	31	0.90
26717077--26717319	77	3.2	77	75	8	239	35	19	15	29	1.92
26717087--26717290	72	2.7	74	82	5	234	36	18	15	29	1.92
26717274--26717357	34	2.5	34	82	5	91	46	22	5	25	1.74
26720490--26720532	20	2.1	21	87	12	63	32	20	4	41	1.73
26728711--26728755	22	2.1	21	84	12	56	40	6	0	53	1.27
26729140--26729179	19	2.2	18	86	8	55	15	5	5	75	1.15
26729893--26729930	20	1.9	20	88	0	58	26	36	15	21	1.93
26733806--26733881	5	14.4	5	78	18	59	22	0	1	76	0.86
26733824--26733876	24	2.3	22	87	12	72	28	0	0	71	0.86
26733834--26733870	16	2.3	16	100	0	74	29	0	0	70	0.88
26733824--26733874	16	2.9	17	80	11	59	29	0	0	70	0.87
26734682--26734731	21	2.4	21	89	0	73	26	32	16	26	1.96
26734980--26735036	10	5.4	10	74	12	51	75	5	5	14	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26734998--26735077	23	3.4	23	79	16	101	77	5	3	13	1.07
26734980--26735044	23	3.1	20	81	16	78	75	4	4	15	1.13
26735355--26735387	3	11.0	3	100	0	66	33	0	33	33	1.58
26736658--26736976	133	2.4	133	80	4	320	30	13	16	39	1.87
26738649--26738686	19	2.0	19	100	0	76	47	21	5	26	1.71
26746258--26746471	80	2.7	79	88	0	284	25	8	25	40	1.84
26746456--26746500	12	3.7	12	79	5	54	17	6	33	42	1.76
26746462--26746508	13	3.6	13	77	8	51	12	8	36	42	1.74
26746462--26746509	25	1.9	25	95	0	87	12	8	37	41	1.73
26763914--26763972	30	2.0	28	83	6	73	27	1	3	67	1.16
26771329--26771359	15	2.1	15	93	0	53	70	0	29	0	0.87
26779151--26779195	17	2.7	16	83	16	56	77	0	20	2	0.87
26779151--26779197	12	4.2	11	76	12	51	76	0	21	2	0.89
26779150--26779197	24	2.0	23	88	4	69	75	0	22	2	0.91
26779207--26779244	17	2.2	18	85	4	51	36	0	0	63	0.95
26779258--26779341	29	2.9	30	82	5	109	35	1	5	57	1.31
26779323--26779357	17	2.1	17	88	0	52	51	0	2	45	1.16
26780917--26780956	14	2.8	14	88	11	55	40	2	0	57	1.12
26782496--26782525	15	1.9	16	93	6	53	40	40	20	0	1.52
26782600--26782646	3	15.7	3	86	0	67	40	34	25	0	1.56
26782591--26782646	12	4.7	12	90	0	67	41	32	26	0	1.56
26783736--26783848	60	1.9	60	90	3	183	23	28	30	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26783817--26783874	21	2.8	21	94	5	100	25	27	24	22	2.00
26795539--26795570	3	10.7	3	100	0	64	65	0	0	34	0.93
26795763--26795811	26	1.9	25	87	4	71	38	0	0	61	0.96
26795770--26795809	12	3.2	12	82	10	53	40	0	0	60	0.97
26795973--26795998	13	2.0	13	100	0	52	46	0	0	53	1.00
26796206--26796414	105	2.0	105	93	1	357	44	7	1	45	1.42
26796343--26796732	167	2.3	167	92	1	638	43	4	3	48	1.38
26796805--26796868	29	2.2	29	83	5	76	50	1	1	46	1.20
26797071--26797113	17	2.7	16	89	10	70	51	0	2	46	1.13
26797091--26797160	27	2.6	30	72	23	73	51	4	0	44	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190