genome.fa.s223.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  72  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11818185--11820152	922	2.2	901	91	3	3199	24	25	24	25	2.00
11822063--11822115	26	2.0	26	85	0	70	28	22	18	30	1.98
11820349--11823715	854	3.9	873	83	7	4181	25	24	23	26	2.00
11822976--11824415	703	2.0	697	87	3	2006	26	23	23	26	2.00
11826330--11826380	26	2.0	26	92	0	84	29	23	17	29	1.97
11827233--11827285	26	2.0	26	96	0	97	28	26	18	26	1.98
11828132--11828184	26	2.0	26	96	0	97	28	26	18	26	1.98
11823674--11835246	899	13.1	896	85	5	13613	25	25	24	25	2.00
11830771--11830823	26	2.0	26	92	0	88	28	24	20	26	1.99
11829633--11835198	874	6.3	871	85	5	6915	25	25	24	25	2.00
11835171--11835224	26	2.1	26	89	3	83	29	29	18	22	1.97
11837763--11837815	26	2.0	26	96	0	97	26	18	26	28	1.98
11838667--11838719	26	2.0	26	85	0	70	30	16	22	30	1.96
11839573--11839625	26	2.0	26	88	0	79	28	22	24	24	2.00
11840476--11840525	26	1.9	26	95	0	91	28	20	24	28	1.99
11841370--11841422	26	2.0	26	92	0	88	26	18	28	26	1.98
11844013--11844065	26	2.0	26	88	0	79	30	18	24	26	1.98
11845783--11845835	26	2.0	26	96	0	97	28	20	24	26	1.99
11836471--11850438	887	15.7	890	84	6	16764	25	24	24	25	2.00
11848407--11848460	26	2.1	26	92	0	90	31	22	22	24	1.98
11849298--11849350	26	2.0	26	92	0	88	30	20	22	26	1.98
11850225--11850588	159	2.3	159	89	1	534	22	30	29	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11850225--11850629	159	2.5	159	86	4	498	23	29	29	17	1.97
11851247--11851299	26	2.0	26	89	7	81	26	18	24	30	1.98
11850380--11856796	895	7.2	894	85	5	8292	25	24	25	25	2.00
11852142--11852194	26	2.0	26	92	0	88	30	18	24	26	1.98
11844917--11856625	887	13.0	894	73	12	7155	25	24	24	25	2.00
11853036--11853114	26	3.0	26	90	0	131	27	17	25	29	1.98
11853938--11853990	26	2.0	26	96	0	97	28	20	24	26	1.99
11855698--11855750	26	2.0	26	92	7	90	26	16	26	30	1.97
11856578--11856956	161	2.4	159	81	4	449	22	30	26	19	1.98
11856599--11857019	161	2.6	160	79	5	359	23	28	28	18	1.98
11858524--11858576	26	2.0	26	85	0	70	28	18	22	30	1.98
11856756--11860475	901	4.1	902	87	2	5250	25	24	24	25	2.00
11860328--11860380	26	2.0	26	85	0	70	30	15	24	30	1.95
11861156--11861208	26	2.0	26	92	0	88	30	20	24	24	1.99
11860518--11864942	893	5.0	894	88	2	5978	25	24	24	25	2.00
11864718--11864770	26	2.0	26	88	0	79	28	16	22	32	1.96
11866266--11866317	26	2.0	26	92	0	86	28	21	23	26	1.99
11867161--11867213	26	2.0	26	88	0	79	30	20	20	28	1.98
11868056--11868105	26	1.9	26	91	0	82	30	22	24	24	1.99
11868956--11869005	26	1.9	26	83	0	64	36	20	18	26	1.95
11869838--11869889	26	2.0	26	92	0	86	28	19	26	25	1.98
11870730--11870782	26	2.0	26	85	0	70	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11865388--11886860	891	24.0	893	78	9	17998	25	24	24	25	2.00
11871620--11871672	26	2.0	26	96	0	97	26	18	26	28	1.98
11872513--11872563	26	2.0	26	100	0	102	27	19	25	27	1.99
11873407--11873460	26	2.1	26	96	0	99	29	18	24	27	1.98
11874293--11874345	26	2.0	26	92	0	88	26	18	24	30	1.98
11876065--11876117	26	2.0	26	88	0	79	26	22	24	26	2.00
11876956--11877008	26	2.0	26	100	0	106	26	20	26	26	1.99
11877836--11877888	26	2.0	26	96	0	97	26	18	26	28	1.98
11878906--11878984	26	3.0	26	96	0	149	26	18	26	27	1.98
11880713--11880764	26	2.0	26	100	0	104	30	19	23	26	1.98
11881613--11881665	26	2.0	26	96	0	97	26	18	26	28	1.98
11884204--11884256	26	2.0	26	96	0	97	28	20	24	26	1.99
11882655--11886860	898	4.7	895	85	6	5328	25	24	24	25	2.00
11885101--11885153	26	2.0	26	85	7	72	28	15	26	30	1.96
11887524--11887575	26	2.0	26	96	0	95	26	17	26	28	1.97
11886095--11888318	720	3.1	708	81	10	2787	26	22	23	26	2.00
11888240--11888517	147	1.9	147	80	4	328	22	26	31	19	1.98
11887550--11892460	861	5.7	858	85	5	6017	25	23	24	25	2.00
11890843--11890895	26	2.0	26	100	0	106	26	20	26	26	1.99
11893037--11893089	26	2.0	26	92	0	88	32	24	15	28	1.95
11894832--11894884	26	2.0	26	88	0	79	24	22	20	32	1.98
11892464--11902554	894	11.4	892	85	5	12950	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11897605--11897637	11	3.0	11	95	0	57	24	27	30	18	1.98
11899260--11899311	25	2.0	26	96	3	97	26	25	21	26	1.99
11900147--11900202	26	2.2	26	96	0	103	28	23	21	26	1.99
11896621--11902554	893	6.7	891	85	5	7471	26	24	23	25	2.00
11901044--11901096	26	2.0	26	96	0	97	26	24	20	28	1.99
11901945--11901996	26	2.0	26	96	0	95	26	25	19	28	1.98
11903612--11903664	26	2.0	26	88	0	79	28	22	18	30	1.98
11902746--11906209	900	3.8	894	87	3	4739	26	24	23	25	2.00
11904509--11904561	26	2.0	26	92	0	88	26	26	20	26	1.99
11905406--11905487	26	3.2	26	94	0	146	29	23	19	28	1.98
11905469--11906847	704	2.0	704	89	1	2127	28	23	22	26	1.99
11907632--11907684	26	2.0	26	96	0	97	28	20	24	26	1.99
11909407--11909459	26	2.0	26	92	0	88	30	20	22	26	1.98
11907228--11914893	879	8.7	901	85	5	9806	25	24	24	25	2.00
11911202--11911254	26	2.0	26	92	0	88	28	18	26	26	1.98
11912968--11913020	26	2.0	26	92	0	88	28	18	26	26	1.98
11913859--11913910	26	2.0	26	96	0	95	26	17	26	28	1.97
11915305--11915357	26	2.0	26	100	0	106	26	16	30	26	1.97
11916198--11916249	26	2.0	26	96	0	95	26	13	26	32	1.94
11916919--11916971	26	2.0	26	92	0	88	26	16	26	30	1.97
11917152--11922456	904	5.9	866	83	7	5872	25	23	24	25	2.00
11918647--11918699	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11919774--11919803	4	7.5	4	92	0	51	0	23	73	3	0.98
11920446--11920497	26	2.0	26	96	3	97	25	17	26	30	1.97
11920675--11920704	8	3.8	8	90	0	51	23	26	50	0	1.50
11921349--11921401	26	2.0	26	100	0	106	26	24	26	22	2.00
11921478--11921527	21	2.5	20	81	12	59	16	44	14	26	1.85
11921489--11921529	21	2.0	21	95	0	73	14	46	14	24	1.82
11924219--11924268	26	1.9	26	100	0	100	30	20	26	24	1.98
11922408--11924976	896	2.9	891	85	6	3449	25	23	24	25	2.00
11925034--11925084	26	2.0	26	88	0	75	31	15	21	31	1.95
11926637--11926686	26	1.9	26	100	0	100	28	20	26	26	1.99
11927537--11927589	26	2.0	26	100	0	106	26	20	26	26	1.99
11925930--11931303	899	6.0	902	86	4	6943	24	23	25	25	2.00
11928439--11928491	26	2.0	26	96	0	97	26	18	26	28	1.98
11928672--11928725	16	3.4	16	92	0	81	7	18	68	5	1.33
11931147--11931199	26	2.0	26	92	7	90	28	22	22	26	1.99
11933351--11933403	26	2.0	26	92	0	88	24	18	26	30	1.98
11934245--11934297	26	2.0	26	96	0	97	26	18	26	28	1.98
11932540--11938695	892	6.9	887	85	5	7707	25	23	24	25	2.00
11936873--11936925	26	2.0	26	100	0	106	26	20	26	26	1.99
11937765--11937817	26	2.0	26	92	7	90	28	20	22	28	1.99
11937929--11939413	719	2.1	719	94	0	2591	25	23	24	26	2.00
11940287--11940339	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11938640--11958841	899	22.5	900	80	7	17839	25	24	24	25	2.00
11941192--11941241	26	1.9	26	95	0	91	28	18	28	26	1.98
11942982--11943034	26	2.0	26	92	0	88	28	15	24	32	1.95
11945636--11945688	26	2.0	26	92	0	88	28	18	24	28	1.98
11946517--11946569	26	2.0	26	92	7	90	26	16	26	30	1.97
11947419--11947471	26	2.0	26	92	0	88	24	18	28	28	1.98
11948330--11948381	26	2.0	26	100	0	104	26	19	26	26	1.99
11950958--11951035	26	3.0	26	74	5	70	33	20	19	26	1.96
11949999--11951904	870	2.2	865	87	3	2707	26	24	24	24	2.00
11951862--11953773	937	2.0	937	96	0	3527	25	24	22	27	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190