genome.fa.s223.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  163  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26464004--26464073	17	3.9	17	70	15	52	25	7	15	51	1.69
26478450--26478827	187	2.0	187	89	3	573	35	14	11	38	1.82
26479012--26479045	6	5.5	6	89	3	50	20	0	0	79	0.73
26480748--26480855	45	2.4	44	80	6	128	43	12	14	28	1.83
26480704--26480855	44	3.4	44	78	5	137	42	12	14	30	1.83
26487811--26487863	27	2.0	27	88	0	79	37	3	20	37	1.71
26493935--26493964	15	2.0	15	93	0	51	56	6	23	13	1.60
26494435--26494476	17	2.6	16	85	7	50	35	0	2	61	1.09
26494435--26494476	15	2.6	16	85	14	52	35	0	2	61	1.09
26494635--26494669	16	2.2	16	90	5	54	22	0	0	77	0.78
26495184--26495233	26	1.9	26	95	0	91	16	0	24	60	1.36
26499606--26499643	19	2.0	19	94	0	67	21	2	10	65	1.35
26500698--26500768	25	2.9	26	86	12	98	14	2	5	77	1.06
26500696--26500776	41	2.0	40	81	11	94	13	4	4	76	1.11
26508287--26508340	22	2.4	23	72	9	58	38	1	1	57	1.20
26509349--26509385	16	2.2	17	90	4	58	72	0	0	27	0.84
26514731--26514762	17	1.9	17	93	6	57	31	0	0	68	0.90
26515393--26515426	6	5.7	6	85	0	50	47	2	2	47	1.32
26515615--26515676	27	2.4	25	76	7	61	43	1	3	51	1.27
26515809--26515845	18	2.0	20	89	10	60	40	0	5	54	1.24
26518223--26518252	2	15.0	2	100	0	60	50	0	0	50	1.00
26519466--26519496	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26520293--26520340	19	2.5	19	86	10	62	52	4	0	43	1.20
26524903--26524935	15	2.2	15	89	10	50	39	0	0	60	0.97
26526355--26526519	85	1.9	85	86	2	233	28	19	7	44	1.77
26528257--26528300	17	2.5	17	82	10	54	56	6	0	36	1.26
26529306--26529366	16	3.8	16	84	4	70	47	8	4	39	1.55
26531038--26531094	20	2.7	21	81	8	62	73	1	1	22	1.02
26533015--26533040	7	3.7	7	100	0	52	61	0	0	38	0.96
26539879--26539907	3	9.7	3	100	0	58	68	0	0	31	0.89
26541270--26541294	12	2.1	12	100	0	50	40	0	0	60	0.97
26542487--26542517	16	1.9	16	93	0	53	35	3	3	58	1.31
26542531--26542593	19	3.3	19	68	2	54	38	4	1	55	1.31
26549544--26549950	104	3.9	105	82	4	486	34	14	14	36	1.87
26549563--26549973	208	2.0	208	86	2	576	35	14	15	35	1.87
26550051--26550116	33	2.0	33	85	5	89	31	15	19	33	1.93
26550094--26550173	23	3.5	23	77	0	79	30	15	23	31	1.95
26550551--26550580	16	1.9	16	93	6	53	3	16	0	80	0.85
26552339--26552372	17	2.1	17	88	5	52	41	11	14	32	1.82
26557577--26557635	3	20.0	3	96	3	111	67	0	0	32	0.91
26559644--26559687	14	3.2	13	84	9	61	63	4	9	22	1.42
26559644--26559708	28	2.3	28	82	10	71	66	3	10	20	1.36
26559669--26559805	39	3.5	38	68	18	93	68	1	9	20	1.25
26559718--26559752	19	1.9	17	88	11	52	80	0	8	11	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26559699--26559755	19	2.9	20	72	25	50	77	1	8	12	1.07
26559740--26559829	35	2.5	35	73	18	87	67	2	7	22	1.27
26564847--26565258	216	1.9	216	93	0	716	34	12	15	37	1.86
26565709--26565734	13	2.0	13	100	0	52	46	7	0	46	1.31
26565811--26565895	7	12.4	7	68	9	50	77	4	3	14	1.06
26565799--26565864	22	3.1	21	75	12	55	72	3	1	22	1.06
26565791--26565889	29	3.6	28	77	11	87	73	6	2	18	1.13
26565846--26565888	13	3.4	13	78	15	54	81	9	2	6	0.95
26565919--26565963	22	2.1	22	95	4	83	13	11	44	31	1.78
26567011--26567422	214	1.9	214	95	1	754	36	16	13	33	1.88
26567430--26567464	15	2.3	15	90	5	52	82	2	0	14	0.77
26567630--26567732	18	5.7	18	69	15	68	40	6	16	35	1.75
26567626--26567732	36	2.9	36	72	10	92	39	7	15	37	1.76
26568233--26568275	23	1.9	22	85	4	59	48	13	4	32	1.63
26568274--26568352	22	3.5	21	75	16	70	41	18	6	32	1.76
26568274--26568337	24	2.8	24	72	13	62	42	18	6	32	1.76
26568234--26568390	46	3.4	46	78	6	124	43	16	7	32	1.75
26568325--26568503	46	3.9	47	75	10	129	40	16	8	34	1.78
26568357--26568503	47	3.2	45	75	12	120	40	14	8	36	1.76
26568402--26568470	24	3.0	23	72	4	57	40	14	8	36	1.77
26569834--26569873	19	2.2	19	90	4	64	7	12	0	80	0.91
26569834--26569885	26	2.0	26	84	0	68	11	15	0	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26569842--26569883	10	4.3	10	87	6	59	11	11	0	76	1.03
26569842--26569883	19	2.2	19	91	0	66	11	11	0	76	1.03
26572835--26572869	8	4.4	8	88	0	52	65	2	0	31	1.07
26573649--26573759	58	1.9	58	98	0	213	37	9	16	36	1.80
26573869--26573924	30	1.9	30	88	3	87	75	3	0	21	0.96
26575064--26575093	4	7.5	4	92	0	51	53	20	0	26	1.46
26576274--26576328	13	4.3	13	77	11	51	74	9	3	12	1.18
26576299--26576328	14	2.2	13	94	5	51	80	6	0	13	0.91
26576274--26576326	12	4.2	12	74	9	52	75	9	3	11	1.16
26577161--26577207	10	4.6	10	81	2	58	29	0	0	70	0.88
26577162--26577209	19	2.5	20	86	3	62	29	0	0	70	0.87
26577522--26577584	17	3.6	17	77	12	58	68	0	1	30	0.99
26578214--26578354	69	2.0	69	93	0	237	36	5	11	46	1.63
26579039--26579093	19	2.9	18	82	15	67	76	12	0	10	1.02
26591216--26591248	14	2.4	14	90	5	50	18	9	15	57	1.63
26591513--26591537	11	2.3	11	100	0	50	64	0	0	36	0.94
26591679--26591735	28	2.0	28	83	12	73	33	7	0	59	1.24
26593111--26593205	50	1.9	48	83	12	122	33	0	5	61	1.19
26593194--26593246	21	2.5	20	82	17	63	50	0	0	49	1.00
26593200--26593266	21	2.9	22	85	14	75	55	0	1	43	1.09
26593261--26593299	12	2.9	14	77	14	55	64	0	0	35	0.94
26593256--26593313	11	4.8	12	78	19	59	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26593326--26593418	16	6.1	16	69	14	52	36	1	3	59	1.21
26596119--26596146	4	7.0	4	100	0	56	25	0	0	75	0.81
26596224--26596266	18	2.3	19	80	4	52	27	2	0	69	1.00
26597752--26597799	3	16.0	3	91	0	78	31	31	0	37	1.58
26600015--26600044	3	10.0	3	92	0	51	63	0	0	36	0.95
26600461--26600505	14	3.1	14	87	6	72	31	4	6	57	1.44
26603798--26603839	20	2.1	20	100	0	84	33	4	42	19	1.72
26608168--26608204	17	2.1	18	90	5	58	40	5	0	54	1.24
26609447--26609477	8	3.9	8	95	0	53	41	0	58	0	0.98
26611076--26611152	24	3.4	22	76	16	59	38	0	1	59	1.06
26611089--26611154	32	2.1	32	85	5	89	45	0	1	53	1.09
26611096--26611152	20	2.6	22	86	10	73	43	0	1	54	1.10
26612360--26612389	7	4.1	7	91	8	51	83	0	0	16	0.65
26614744--26614790	23	2.0	23	83	0	58	46	10	8	34	1.69
26616023--26616074	22	2.5	22	90	6	81	51	0	0	48	1.00
26616064--26616112	8	6.1	8	78	0	53	61	2	0	36	1.08
26617885--26617954	29	2.5	28	81	9	79	52	2	0	44	1.15
26617895--26617955	29	2.1	29	87	0	86	49	3	0	47	1.18
26621356--26621391	2	18.0	2	100	0	72	50	50	0	0	1.00
26624665--26624700	15	2.4	15	95	0	63	61	5	0	33	1.19
26624924--26624961	19	2.0	19	85	10	51	68	5	5	21	1.29
26629623--26629707	44	1.9	44	88	4	127	45	4	9	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26629616--26629733	22	5.4	22	75	7	87	44	4	10	40	1.58
26629719--26629778	22	2.8	21	87	5	84	43	0	18	38	1.50
26629886--26630032	65	2.3	66	86	5	210	51	4	9	35	1.54
26629842--26630009	22	7.7	22	72	9	94	54	2	6	36	1.42
26630188--26630266	22	3.6	22	71	5	70	48	6	10	35	1.62
26630163--26630272	44	2.5	44	79	2	114	46	8	10	35	1.67
26630295--26630355	30	2.0	30	100	0	122	29	13	16	40	1.86
26630559--26630671	22	5.2	22	72	3	77	55	5	6	32	1.47
26630681--26630754	22	3.3	22	74	12	71	45	2	8	43	1.47
26630937--26631060	22	5.6	22	76	9	92	53	5	6	34	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190