genome.fa.s223.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  94  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14875694--14875926	116	2.0	115	95	0	421	22	24	21	31	1.98
14878014--14878066	26	2.0	26	92	0	88	30	26	18	24	1.98
14880695--14880747	26	2.0	26	85	0	70	30	24	18	26	1.98
14881568--14881620	26	2.0	26	85	0	70	30	26	16	26	1.97
14882439--14882492	26	2.1	26	100	0	108	24	25	22	27	2.00
14883347--14883399	26	2.0	26	96	0	97	26	24	20	28	1.99
14878907--14886497	903	8.5	896	84	5	9516	25	24	24	25	2.00
14885116--14885166	26	2.0	26	96	0	93	25	25	19	29	1.99
14886016--14886071	26	2.2	26	86	0	76	30	23	17	28	1.97
14887588--14887640	26	2.0	26	96	0	97	28	26	18	26	1.98
14887721--14887750	11	2.7	11	100	0	60	16	40	33	10	1.82
14889339--14889391	26	2.0	26	96	0	97	28	26	18	26	1.98
14892885--14892937	26	2.0	26	92	0	88	28	24	18	28	1.98
14894631--14894683	26	2.0	26	96	0	97	26	24	20	28	1.99
14895528--14895578	26	2.0	26	96	0	93	25	25	19	29	1.99
14899736--14899788	26	2.0	26	96	0	97	28	26	18	26	1.98
14900633--14900685	26	2.0	26	96	0	97	24	28	20	26	1.99
14901526--14901576	26	2.0	26	92	0	84	27	25	17	29	1.98
14902408--14902460	26	2.0	26	88	0	79	30	22	18	28	1.98
14901616--14909171	889	8.5	901	84	6	9084	26	24	23	25	2.00
14897985--14909171	903	12.6	893	84	6	13161	25	24	24	25	2.00
14905926--14905978	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14906815--14906867	26	2.0	26	92	0	88	28	24	18	28	1.98
14910236--14910314	26	3.0	26	98	0	149	26	24	20	29	1.99
14908158--14910602	826	3.0	792	73	11	2129	24	25	24	24	2.00
14912654--14912706	26	2.0	26	88	0	79	26	24	20	28	1.99
14913355--14913407	26	2.0	26	96	0	97	28	26	18	26	1.98
14913381--14936911	872	26.2	877	77	10	17809	25	24	23	25	2.00
14916004--14916056	26	2.0	26	96	0	97	26	26	18	28	1.98
14915126--14921114	903	6.7	900	85	4	7527	26	24	23	25	2.00
14916908--14916959	26	2.0	26	96	3	97	26	26	21	25	1.99
14917806--14917858	26	2.0	26	92	0	88	26	22	20	30	1.98
14918701--14918750	26	1.9	26	91	0	82	22	26	22	30	1.99
14915126--14945802	902	33.8	895	72	13	16574	25	24	23	25	2.00
14920462--14920514	26	2.0	26	96	0	97	26	24	20	28	1.99
14922190--14922240	25	2.0	26	84	3	68	29	27	17	25	1.98
14923071--14923123	26	2.0	26	100	0	106	26	26	20	26	1.99
14924880--14924932	26	2.0	26	92	0	88	26	20	22	30	1.98
14925776--14925827	26	2.0	26	92	3	88	26	23	21	28	1.99
14926669--14926721	26	2.0	26	88	0	79	28	26	22	22	1.99
14927522--14927577	26	2.2	26	96	0	103	30	23	19	26	1.98
14927366--14927766	185	2.2	184	83	3	484	23	27	26	21	1.99
14928526--14928878	185	1.9	185	87	0	517	21	30	26	22	1.99
14931443--14931494	26	2.0	26	96	0	95	28	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14932315--14932368	26	2.1	26	93	6	92	29	27	16	25	1.97
14934069--14934121	26	2.0	26	96	0	97	28	26	18	26	1.98
14935830--14935908	26	3.0	26	98	0	149	27	26	18	26	1.98
14938751--14938803	26	2.0	26	96	0	97	28	26	18	26	1.98
14939492--14939838	159	2.2	159	86	1	471	21	29	27	20	1.98
14941537--14941589	26	2.0	26	92	0	88	30	26	16	26	1.97
14943325--14943377	26	2.0	26	96	0	97	30	24	16	28	1.97
14940827--14945829	866	5.7	890	83	6	6080	26	24	23	25	2.00
14947566--14947616	26	2.0	26	92	0	84	29	23	17	29	1.97
14949135--14949186	26	2.0	26	92	0	86	26	26	19	26	1.99
14949873--14949925	26	2.0	26	88	0	79	26	28	18	26	1.98
14949104--14950637	732	2.1	736	86	4	2148	27	22	22	27	1.99
14949842--14954968	897	5.8	899	84	4	6521	26	24	24	25	2.00
14954317--14954369	26	2.0	26	92	0	88	26	22	22	28	1.99
14955876--14955928	26	2.0	26	96	0	97	28	24	20	26	1.99
14956770--14956822	26	2.0	26	96	0	97	28	24	20	26	1.99
14957635--14957687	26	2.0	26	96	0	97	26	24	22	26	2.00
14958539--14958591	26	2.0	26	88	0	79	30	22	18	28	1.98
14954981--14961514	903	7.4	900	87	4	8397	25	24	24	25	2.00
14960344--14960396	26	2.0	26	100	0	106	26	22	20	30	1.98
14962018--14962070	26	2.0	26	96	0	97	28	26	18	26	1.98
14961517--14966660	898	5.8	898	85	4	6575	26	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14964668--14964721	26	2.0	27	92	3	92	29	25	18	25	1.98
14965554--14965606	26	2.0	26	88	0	79	28	22	20	28	1.99
14969745--14969797	26	2.0	26	96	0	97	28	26	18	26	1.98
14970662--14970714	26	2.0	26	92	0	88	30	26	16	26	1.97
14971680--14972908	633	1.9	636	88	0	1863	27	23	22	26	1.99
14973769--14973818	26	1.9	26	95	0	91	24	26	20	30	1.98
14973010--14974467	744	2.0	746	89	2	2221	26	23	23	25	2.00
14974592--14974643	26	2.0	26	88	3	79	26	23	23	26	2.00
14974469--14974802	184	1.8	185	87	0	499	19	28	30	21	1.98
14976520--14976589	26	2.7	26	91	4	106	22	21	25	30	1.99
14974848--14984405	883	10.7	898	84	5	11291	25	25	23	25	2.00
14978308--14978360	26	2.0	26	100	0	106	26	26	20	26	1.99
14980092--14980155	26	2.5	26	94	0	119	29	21	20	28	1.98
14980983--14981035	26	2.0	26	92	0	88	28	28	18	24	1.98
14981697--14981722	8	3.2	8	100	0	52	0	61	26	11	1.30
14974841--14984384	892	10.7	886	82	7	9199	25	25	23	25	2.00
14982782--14982842	30	2.1	28	85	14	79	26	26	22	24	2.00
14983694--14983745	26	2.0	26	85	10	72	26	26	17	28	1.97
14986528--14986580	26	2.0	26	96	0	97	28	20	24	26	1.99
14985492--15001133	894	17.7	895	84	6	17703	25	23	24	26	2.00
14987422--14987474	26	2.0	26	92	0	88	26	18	24	30	1.98
14988317--14988369	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14990984--14991036	26	2.0	26	92	0	88	26	16	26	30	1.97
14992683--14992735	26	2.0	26	96	0	97	30	18	24	26	1.98
14993586--14993638	26	2.0	26	96	0	97	28	20	22	28	1.99
14992060--15001136	903	10.2	903	83	5	10667	25	24	24	25	2.00
14994489--14994541	26	2.0	26	88	0	79	30	20	20	28	1.98
14995393--14995445	26	2.0	26	96	0	97	26	22	24	26	2.00
14996286--14996337	26	2.0	26	96	0	95	26	19	25	28	1.98
14997179--14997231	26	2.0	26	88	0	79	26	20	24	28	1.99
14998081--14998131	26	2.0	26	92	0	84	29	17	25	27	1.98
15000703--15000755	26	2.0	26	96	0	97	26	18	26	28	1.98
15001314--15001366	26	2.0	26	100	0	106	26	20	26	26	1.99
15003111--15003161	26	2.0	26	88	0	75	29	13	29	27	1.94
15003840--15003892	26	2.0	26	92	0	88	26	20	26	26	1.99
15005576--15005628	26	2.0	26	96	0	97	26	22	26	24	2.00
15006477--15006529	26	2.0	26	92	0	88	28	22	24	24	2.00
15004453--15008027	898	4.1	897	86	4	4754	25	23	25	25	2.00
15006503--15022267	833	17.8	841	71	14	7669	25	23	24	26	2.00
15008135--15008424	159	1.8	159	80	4	352	22	26	31	20	1.98
15009016--15009068	26	2.0	26	92	0	88	26	18	24	30	1.98
15008055--15022488	901	16.2	880	71	14	6333	25	24	24	25	2.00
15011669--15011721	26	2.0	26	96	0	97	26	18	26	28	1.98
15010804--15014790	891	4.5	896	83	6	4430	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15017155--15017204	26	1.9	26	95	0	91	30	20	26	24	1.98
15016291--15022456	894	7.0	893	83	6	7476	25	24	24	25	2.00
15020626--15020675	26	1.9	26	95	0	91	28	14	26	32	1.94
15020025--15022452	902	2.7	898	86	3	3354	25	23	23	26	2.00
15023995--15024047	26	2.0	26	88	0	79	30	18	24	26	1.98
15026648--15026700	26	2.0	26	92	0	88	26	16	24	32	1.97
15024885--15028623	826	4.3	884	81	8	4247	25	23	24	25	2.00
15029419--15029471	26	2.0	26	100	0	106	26	20	26	26	1.99
15032298--15032347	26	1.9	26	91	0	82	32	22	20	26	1.98
15033032--15033084	26	2.0	26	92	0	88	26	16	26	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190