genome.fa.s223.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  84  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13510177--13510227	26	2.0	26	100	0	102	29	15	27	27	1.96
13509553--13511923	904	2.7	885	86	3	3235	26	23	23	26	2.00
13512470--13512522	26	2.0	26	92	0	88	26	22	24	26	2.00
13514252--13514304	26	2.0	26	100	0	106	26	20	26	26	1.99
13515136--13515186	26	2.0	26	88	0	75	31	15	23	29	1.95
13516660--13516712	26	2.0	26	96	0	97	28	20	24	26	1.99
13517548--13517600	26	2.0	26	92	0	88	28	20	22	28	1.99
13519210--13519242	11	3.0	11	100	0	66	9	36	36	18	1.82
13519322--13519374	26	2.0	26	92	0	88	26	16	26	30	1.97
13521089--13521146	26	2.2	27	93	3	100	25	18	25	29	1.98
13521995--13522052	26	2.2	27	96	3	109	25	20	25	27	1.99
13522902--13522954	26	2.0	26	96	0	97	30	18	22	28	1.98
13516234--13525848	904	10.8	904	86	3	12073	25	23	25	25	2.00
13526066--13526118	26	2.0	26	88	0	79	30	20	20	28	1.98
13525435--13526311	467	1.9	453	82	7	1095	22	30	27	19	1.98
13527408--13547032	890	22.1	872	83	7	21283	25	24	24	25	2.00
13530774--13530826	26	2.0	26	92	0	88	28	18	24	28	1.98
13531680--13531733	26	2.1	26	96	0	99	27	20	25	25	1.99
13532539--13532591	26	2.0	26	88	0	79	28	16	24	30	1.97
13533444--13533496	26	2.0	26	100	0	106	26	20	26	26	1.99
13532333--13559137	904	29.7	892	77	9	21510	25	24	25	25	2.00
13535229--13535281	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13536988--13537040	26	2.0	26	100	0	106	26	20	26	26	1.99
13537889--13537957	26	2.7	26	100	0	138	28	11	30	28	1.92
13537889--13537967	26	3.0	26	92	0	104	26	13	30	29	1.94
13540576--13540628	26	2.0	26	96	0	97	26	18	26	28	1.98
13543225--13543277	26	2.0	26	92	0	88	28	16	28	26	1.97
13544989--13545041	26	2.0	26	85	7	72	30	18	22	28	1.98
13544126--13547020	905	3.2	903	88	3	4030	25	24	24	24	2.00
13546790--13546842	26	2.0	26	88	0	79	30	20	18	30	1.97
13547805--13548180	159	2.4	158	85	2	513	19	28	30	21	1.98
13547805--13548257	158	2.9	159	81	2	446	20	27	31	20	1.97
13549262--13549320	26	2.4	24	80	5	64	25	5	22	47	1.71
13550622--13550674	26	2.0	26	100	0	106	26	20	26	26	1.99
13551507--13551559	26	2.0	26	88	0	79	28	20	24	26	1.99
13552410--13552462	26	2.0	26	96	0	97	26	18	26	28	1.98
13553312--13553364	26	2.0	26	92	0	88	28	18	24	28	1.98
13554206--13554258	26	2.0	26	100	0	106	26	20	26	26	1.99
13555106--13555210	26	4.0	26	88	4	140	31	17	24	26	1.97
13555106--13555210	52	2.0	52	88	0	156	31	17	24	26	1.97
13557831--13557883	26	2.0	26	96	0	97	26	16	24	32	1.97
13559463--13559513	26	2.0	26	88	0	75	29	15	25	29	1.96
13558397--13559863	726	2.0	729	88	2	2199	24	25	26	23	2.00
13561235--13561287	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13562137--13562189	26	2.0	26	96	0	97	28	18	26	26	1.98
13563034--13563086	26	2.0	26	92	0	88	24	18	28	28	1.98
13561151--13571979	899	12.1	897	85	4	13431	25	24	24	25	2.00
13564826--13564874	25	1.9	26	84	12	66	28	20	26	24	1.99
13565731--13565783	26	2.0	26	88	0	79	26	18	24	30	1.98
13566632--13566684	26	2.0	26	88	0	79	28	16	24	30	1.97
13568386--13568438	26	2.0	26	92	0	88	28	18	24	28	1.98
13569260--13569313	26	2.1	26	96	0	99	29	22	24	24	1.99
13571046--13571118	26	2.8	27	81	8	89	27	19	26	27	1.99
13572624--13572943	159	2.0	159	83	0	408	22	28	28	20	1.98
13572914--13572964	26	2.0	26	96	0	93	25	25	21	27	1.99
13574699--13574751	26	2.0	26	88	0	79	30	24	16	28	1.97
13573822--13577464	851	4.1	885	82	7	4257	25	24	23	25	2.00
13576424--13576476	26	2.0	26	96	0	97	24	26	22	26	2.00
13577327--13577379	26	2.0	26	100	0	106	30	26	16	26	1.97
13578528--13581150	898	2.9	890	86	3	3522	25	24	24	25	2.00
13580745--13581566	416	2.0	416	88	1	1218	23	24	27	24	2.00
13582026--13582078	26	2.0	26	100	0	106	26	20	26	26	1.99
13582443--13582501	26	2.2	26	81	3	73	23	10	11	54	1.67
13582444--13582502	27	2.2	26	81	6	64	22	10	11	55	1.65
13582925--13582977	26	2.0	26	96	0	97	26	22	26	24	2.00
13581161--13583790	888	2.9	888	85	3	3557	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13586083--13586135	26	2.0	26	88	0	79	28	15	26	30	1.96
13586109--13589716	904	4.1	871	83	6	4412	25	23	25	25	2.00
13588761--13588811	26	2.0	26	96	0	93	29	17	23	29	1.97
13586980--13589685	900	3.0	895	87	2	3853	25	23	24	25	2.00
13590370--13590422	26	2.0	26	88	0	79	26	15	26	32	1.95
13592332--13592384	26	2.0	26	89	7	81	30	26	16	26	1.97
13590984--13594418	878	3.9	881	84	6	4179	25	24	24	25	2.00
13594539--13594591	26	2.0	26	92	7	90	26	22	22	28	1.99
13597170--13597222	26	2.0	26	88	0	79	28	20	20	30	1.98
13594565--13603887	881	10.5	877	84	6	11353	25	24	24	25	2.00
13598947--13598999	26	2.0	26	88	0	79	28	24	20	26	1.99
13599646--13599699	16	3.4	16	78	0	63	5	64	20	9	1.42
13599655--13599698	20	2.2	20	87	0	61	6	65	18	9	1.42
13599880--13599932	26	2.0	26	100	0	106	26	26	20	26	1.99
13601658--13601710	26	2.0	26	92	0	88	26	22	20	30	1.98
13600783--13603883	880	3.5	892	83	6	3999	25	24	24	25	2.00
13603431--13603483	26	2.0	26	88	0	79	30	24	16	28	1.97
13604022--13604071	26	1.9	26	91	0	82	30	18	24	28	1.97
13604918--13604999	26	3.2	26	87	0	128	28	18	24	29	1.98
13605834--13605886	26	2.0	26	96	0	97	26	18	26	28	1.98
13603893--13607854	890	4.4	900	84	5	4881	25	24	23	25	2.00
13607625--13607674	26	1.9	26	95	0	91	28	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13608465--13608517	26	2.0	26	96	0	97	26	18	26	28	1.98
13609359--13609411	26	2.0	26	96	0	97	28	20	24	26	1.99
13607869--13610091	892	2.5	898	88	2	3207	26	22	23	27	1.99
13610945--13610997	26	2.0	26	92	0	88	26	20	24	28	1.99
13611838--13611888	26	2.0	26	92	0	84	25	21	23	29	1.99
13610348--13616205	901	6.6	890	84	5	7118	25	23	24	26	2.00
13612732--13612810	26	3.0	26	100	0	158	26	20	26	26	1.99
13614556--13614608	26	2.0	26	96	0	97	28	20	24	26	1.99
13616820--13616871	26	2.0	26	92	3	88	25	17	26	30	1.97
13618598--13618653	26	2.2	26	83	6	69	30	17	19	32	1.95
13619472--13619524	26	2.0	26	85	0	70	26	22	20	30	1.98
13620287--13620336	26	1.9	26	100	0	100	24	26	20	30	1.98
13621903--13622271	185	2.0	185	81	5	433	21	28	27	22	1.99
13623113--13623165	26	2.0	26	96	0	97	22	28	24	24	2.00
13624022--13624073	26	2.0	25	92	3	86	32	26	15	25	1.95
13622246--13628218	893	6.7	903	85	4	7613	26	24	23	25	2.00
13625821--13625870	26	1.9	26	95	0	91	34	24	14	28	1.93
13627575--13627627	26	2.0	26	88	0	79	28	22	20	28	1.99
13629147--13629199	26	2.0	26	96	0	97	28	22	20	28	1.99
13630032--13630083	25	2.0	26	92	3	88	28	26	19	25	1.98
13630928--13630980	26	2.0	26	92	0	88	26	18	22	32	1.97
13628467--13633151	880	5.3	896	83	7	5671	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13632701--13632753	26	2.0	26	88	0	79	30	24	16	28	1.97
13634168--13634250	26	3.2	25	81	10	103	28	18	24	28	1.98
13635077--13635129	26	2.0	26	96	0	97	26	18	26	28	1.98
13633239--13637095	887	4.3	898	82	6	4523	25	23	24	26	2.00
13636866--13636915	26	1.9	26	95	0	91	28	18	26	28	1.98
13637705--13637757	26	2.0	26	96	0	97	26	18	26	28	1.98
13636281--13638831	839	3.0	830	83	7	2886	25	23	23	26	2.00
13638598--13638650	26	2.0	26	92	0	88	28	18	24	28	1.98
13637110--13639327	890	2.5	896	88	4	3263	25	22	24	27	2.00
13641047--13641099	26	2.0	26	92	0	88	24	22	24	28	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190