genome.fa.s223.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  70  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11541491--11541541	26	2.0	26	100	0	102	27	19	25	27	1.99
11545008--11545059	26	2.0	25	88	3	77	28	19	23	28	1.98
11545858--11545910	26	2.0	26	96	0	97	26	22	24	26	2.00
11545467--11557580	901	13.5	899	87	3	15458	25	24	24	25	2.00
11547667--11547719	26	2.0	26	92	0	88	28	18	26	26	1.98
11548560--11548612	26	2.0	26	96	0	97	28	20	24	26	1.99
11549469--11549521	26	2.0	26	96	0	97	28	20	24	26	1.99
11550320--11550372	26	2.0	26	92	0	88	30	20	24	24	1.99
11551223--11551275	26	2.0	26	88	0	79	30	18	24	26	1.98
11549702--11557580	903	8.8	902	88	3	10505	25	24	24	25	2.00
11552098--11552150	26	2.0	26	88	0	79	30	20	20	28	1.98
11553000--11553051	26	2.0	26	92	0	86	26	19	25	28	1.98
11553896--11553948	26	2.0	26	96	0	97	28	20	24	26	1.99
11554799--11554851	26	2.0	26	96	0	97	28	20	24	26	1.99
11555703--11555755	26	2.0	26	96	0	97	28	20	24	26	1.99
11556593--11556671	26	3.0	26	88	3	115	27	17	25	29	1.98
11557516--11557568	26	2.0	26	88	0	79	28	18	22	30	1.98
11557627--11557679	26	2.0	26	85	7	72	28	22	20	28	1.99
11558529--11558581	26	2.0	26	92	7	90	30	26	16	26	1.97
11560304--11560356	26	2.0	26	96	0	97	26	24	22	26	2.00
11561196--11561248	26	2.0	26	96	0	97	24	26	20	28	1.99
11559425--11573264	878	15.5	902	81	7	14760	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11563851--11563907	29	2.0	30	89	6	91	26	31	17	24	1.97
11564748--11564798	26	2.0	26	96	0	93	27	23	19	29	1.98
11565646--11565698	26	2.0	26	92	7	90	30	26	16	26	1.97
11566549--11566601	26	2.0	26	92	0	88	26	26	18	28	1.98
11557653--11571526	878	15.5	876	82	6	15133	25	24	23	25	2.00
11568327--11568405	26	3.0	26	96	0	149	27	26	18	26	1.98
11570132--11570210	26	3.0	26	96	0	149	27	26	18	26	1.98
11571520--11573264	895	1.9	898	86	3	2434	25	24	24	25	2.00
11574866--11574915	26	1.9	26	91	0	82	28	20	26	26	1.99
11575706--11575757	26	2.0	26	92	0	86	30	19	23	26	1.98
11574528--11586017	835	13.0	834	73	13	5324	25	23	25	25	2.00
11576540--11576592	26	2.0	26	82	13	65	32	16	22	28	1.96
11577442--11577494	26	2.0	26	96	0	97	30	18	22	28	1.98
11578308--11578360	26	2.0	26	85	7	72	33	16	20	28	1.95
11579201--11579253	26	2.0	26	92	0	88	32	18	20	28	1.97
11580125--11580177	26	2.0	26	92	0	88	24	18	26	30	1.98
11577968--11586041	892	8.9	903	85	4	10094	25	24	24	25	2.00
11581028--11581080	26	2.0	26	92	0	88	24	18	26	30	1.98
11582811--11582863	26	2.0	26	92	0	88	28	20	22	28	1.99
11584611--11584660	26	1.9	26	100	0	100	28	20	28	24	1.99
11585525--11585574	26	1.9	26	87	0	73	34	16	20	30	1.94
11586609--11586687	26	3.0	26	98	0	149	26	18	26	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11588802--11588854	26	2.0	26	96	0	97	28	20	24	26	1.99
11589700--11589752	26	2.0	26	82	13	65	28	20	20	30	1.98
11588469--11600969	890	14.0	896	78	7	11663	25	23	24	25	2.00
11595030--11595081	25	2.0	26	85	3	70	32	17	23	26	1.96
11596891--11596942	25	2.0	26	85	3	70	32	17	23	26	1.96
11597774--11597826	26	2.0	26	92	0	88	24	18	28	28	1.98
11597980--11598015	4	9.0	4	90	0	54	2	19	75	2	1.06
11598663--11598715	26	2.0	26	92	0	88	26	20	26	26	1.99
11599544--11599596	26	2.0	26	88	0	79	26	18	22	32	1.97
11598000--11600971	894	3.3	883	85	4	3789	25	23	24	26	2.00
11601610--11601662	26	2.0	26	85	0	70	32	18	20	28	1.97
11600993--11606821	895	6.6	896	89	2	7862	25	23	24	25	2.00
11606634--11607011	190	2.0	190	90	1	596	28	26	22	22	1.99
11609631--11613918	889	4.9	887	86	6	5480	25	23	25	25	2.00
11611384--11611436	26	2.0	26	96	0	97	26	18	26	28	1.98
11612266--11612315	26	1.9	26	91	0	82	32	16	22	30	1.95
11610114--11613917	890	4.4	856	81	10	3841	25	23	24	25	2.00
11613105--11613157	26	2.0	26	85	7	72	26	15	24	33	1.95
11615754--11615806	26	2.0	26	88	0	79	28	22	18	30	1.98
11616652--11616704	26	2.0	26	96	0	97	26	24	20	28	1.99
11617555--11617607	26	2.0	26	92	0	88	28	22	20	28	1.99
11614879--11619210	903	4.8	901	87	2	5926	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11618458--11618510	26	2.0	26	85	0	70	26	22	20	30	1.98
11621878--11621929	26	2.0	26	92	0	86	26	26	19	26	1.99
11622785--11622837	26	2.0	26	92	0	88	30	26	18	24	1.98
11623670--11623721	26	2.0	26	88	0	77	28	25	15	30	1.96
11624574--11624626	26	2.0	26	92	0	88	28	24	22	24	2.00
11620782--11628948	882	9.2	880	84	4	9204	25	24	24	25	2.00
11627221--11627272	25	2.0	26	92	3	88	26	23	21	28	1.99
11629254--11629306	26	2.0	26	92	0	88	30	26	16	26	1.97
11630127--11630179	26	2.0	26	92	0	88	26	26	18	28	1.98
11629339--11631780	872	2.8	864	85	5	3087	25	24	24	26	2.00
11633228--11633280	26	2.0	26	92	0	88	28	18	24	28	1.98
11634050--11634102	26	2.0	26	92	0	88	26	16	26	30	1.97
11633682--11635863	890	2.4	878	85	5	2748	25	23	24	25	2.00
11636553--11636605	26	2.0	26	92	7	90	26	18	28	26	1.98
11637435--11637485	26	2.0	26	88	0	75	29	11	27	31	1.92
11638330--11638381	26	2.0	25	92	3	86	28	17	25	28	1.97
11635841--11640332	981	4.9	882	78	9	4284	26	23	24	26	2.00
11638746--11638874	67	1.9	69	85	6	183	22	10	13	53	1.70
11639285--11639363	26	3.0	26	98	0	149	26	18	26	27	1.98
11640215--11640262	25	1.9	25	95	0	87	27	20	27	25	1.99
11641048--11641126	26	3.0	26	98	0	149	26	18	26	27	1.98
11640334--11644032	892	4.1	895	86	3	4946	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11643754--11643806	26	2.0	26	92	0	88	26	16	26	30	1.97
11644490--11644542	26	2.0	26	92	0	88	26	22	22	28	1.99
11643296--11645519	732	3.0	727	86	4	2825	25	24	25	24	2.00
11645224--11645302	26	3.0	26	98	0	149	26	18	26	27	1.98
11646116--11646168	26	2.0	26	92	0	88	28	18	24	28	1.98
11647015--11647067	26	2.0	26	96	0	97	28	20	24	26	1.99
11648641--11648693	26	2.0	26	100	0	106	26	26	20	26	1.99
11649378--11649430	26	2.0	26	92	0	88	28	28	18	24	1.98
11648631--11650085	729	2.0	733	89	2	2262	26	23	23	25	2.00
11648609--11650141	737	2.1	737	88	3	2293	26	24	24	25	2.00
11650085--11650459	159	2.4	159	83	1	484	19	28	28	23	1.98
11650433--11650485	26	2.0	26	96	0	97	28	26	18	26	1.98
11651316--11651368	26	2.0	26	96	0	97	26	28	20	24	1.99
11653118--11653167	26	1.9	26	95	0	91	26	24	20	30	1.98
11650329--11658254	905	8.9	901	84	4	9483	25	24	24	25	2.00
11653991--11654042	26	2.0	26	92	0	86	26	23	19	30	1.98
11654893--11654945	26	2.0	26	96	0	97	26	24	22	26	2.00
11655798--11655850	26	2.0	26	96	0	97	26	24	20	28	1.99
11658299--11658354	26	2.2	26	96	0	103	30	25	17	26	1.97
11660948--11661000	26	2.0	26	92	0	88	26	22	22	28	1.99
11660073--11667864	905	8.6	900	86	3	10056	26	24	23	25	2.00
11665464--11665516	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11667271--11667323	26	2.0	26	100	0	106	30	26	16	26	1.97
11668752--11668805	26	2.1	26	89	0	81	31	25	16	25	1.97
11669625--11669677	26	2.0	26	96	0	97	26	15	26	32	1.95
11670356--11670406	26	2.0	26	92	0	84	29	19	21	29	1.98
11671826--11671876	26	2.0	26	92	0	84	29	15	21	33	1.94
11669298--11673679	736	6.0	734	87	2	5973	25	25	25	24	2.00
11673282--11673334	26	2.0	26	92	0	88	26	16	26	30	1.97
11674906--11674958	26	2.0	26	96	0	97	28	20	24	26	1.99
11673838--11675253	748	1.9	740	84	5	1918	25	25	26	23	2.00
11675809--11675861	26	2.0	26	92	0	88	28	22	24	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190