genome.fa.s223.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  22  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3450713--3450764	22	2.5	22	93	6	90	50	0	0	50	1.00
3450737--3450797	30	2.0	30	83	0	77	54	1	0	44	1.10
3451128--3451159	10	3.1	10	91	8	55	28	0	3	68	1.04
3452438--3452480	3	14.7	3	95	4	79	34	0	0	65	0.93
3453634--3453719	44	2.0	41	82	6	100	47	2	0	50	1.14
3453698--3453750	27	1.9	29	85	11	76	47	3	0	49	1.19
3453870--3453903	16	2.1	17	88	5	52	47	2	0	50	1.16
3453917--3453947	10	3.0	10	95	4	53	77	0	0	22	0.77
3455161--3455323	82	2.0	82	96	0	299	28	12	15	42	1.85
3464580--3464619	2	20.0	2	100	0	80	0	50	0	50	1.00
3465825--3465905	27	3.2	25	74	11	67	46	0	0	53	1.00
3465828--3465899	23	3.0	23	71	23	60	48	0	0	51	1.00
3475739--3475790	3	18.3	3	78	11	56	32	3	1	61	1.25
3476618--3476687	18	4.0	17	76	12	63	18	2	2	75	1.05
3476623--3476687	28	2.5	24	85	14	85	20	1	3	75	1.02
3476661--3476723	28	2.2	28	78	10	67	23	1	3	71	1.09
3476837--3476874	17	2.2	18	86	9	53	57	7	0	34	1.28
3477728--3477765	19	2.0	19	94	0	67	26	7	5	60	1.46
3482582--3482743	86	1.9	86	87	2	236	34	19	10	35	1.86
3482644--3482699	17	3.2	17	79	2	67	42	23	7	26	1.79
3484326--3484546	57	3.8	58	86	7	317	33	13	7	44	1.72
3484326--3484546	115	1.9	115	90	4	356	33	13	7	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3485492--3485701	4	53.2	4	69	16	68	66	2	2	28	1.20
3485468--3485543	38	2.0	38	84	5	100	68	1	5	25	1.18
3485537--3485586	3	18.7	3	77	22	58	70	0	0	30	0.88
3485430--3485607	34	5.2	33	73	23	113	66	1	4	26	1.20
3485518--3485610	25	3.7	25	78	16	88	65	1	1	32	1.07
3485898--3485960	14	4.4	14	77	16	60	4	1	9	84	0.84
3485898--3485958	10	5.7	10	72	14	50	4	1	9	83	0.86
3485898--3485960	20	3.0	20	77	11	63	4	1	9	84	0.84
3485968--3486262	41	7.1	41	89	2	430	38	23	14	23	1.92
3487464--3487511	11	3.9	12	81	18	55	8	16	0	75	1.04
3487475--3487525	15	3.6	14	79	10	50	7	17	1	72	1.18
3491405--3491617	57	3.7	57	80	10	245	34	12	6	46	1.67
3491405--3491635	118	2.0	118	88	5	351	34	12	6	46	1.68
3491715--3491745	10	3.1	10	90	0	53	0	32	41	25	1.56
3492540--3492748	4	52.2	4	68	19	66	66	2	2	28	1.20
3492554--3492641	25	3.7	22	77	20	72	65	1	2	30	1.12
3492584--3492633	3	17.7	3	76	19	54	68	0	0	32	0.90
3492540--3492641	44	2.3	45	80	14	108	67	0	1	29	1.08
3493256--3493289	18	1.9	17	88	5	50	11	8	0	79	0.94
3496135--3496208	31	2.4	32	84	13	93	45	0	1	52	1.09
3496261--3496303	11	3.8	11	82	17	61	30	0	0	69	0.88
3496685--3496715	16	2.0	16	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3496915--3496947	16	1.9	18	88	11	52	30	0	0	69	0.88
3498664--3498691	6	4.7	6	100	0	56	64	0	17	17	1.30
3500044--3500097	13	4.4	12	86	11	74	68	0	0	31	0.90
3500043--3500098	27	2.3	24	77	17	53	67	0	0	32	0.91
3500043--3500104	20	3.2	20	80	15	76	66	0	0	33	0.92
3500050--3500090	7	6.1	7	81	18	52	68	0	0	31	0.90
3500088--3500151	29	2.2	28	81	13	78	60	0	0	39	0.97
3502606--3502639	17	2.1	16	88	5	50	23	14	0	61	1.33
3516255--3516320	26	2.6	26	81	13	93	68	0	0	31	0.90
3520775--3520819	19	2.5	19	86	13	60	53	2	0	44	1.13
3522735--3522880	52	2.8	51	82	8	168	46	4	17	30	1.69
3526068--3526099	2	16.0	2	100	0	64	50	0	0	50	1.00
3530994--3531023	11	2.7	11	94	0	51	30	0	13	56	1.37
3531034--3531217	97	1.9	99	92	4	311	31	2	11	53	1.51
3531153--3531201	22	2.3	22	78	3	55	30	2	14	53	1.52
3538380--3538422	12	3.3	13	83	9	52	67	0	0	32	0.91
3538382--3538422	14	3.0	14	79	13	50	65	0	0	34	0.93
3540499--3540598	51	2.0	51	92	4	166	30	17	13	40	1.87
3541894--3541933	19	2.1	19	90	0	62	35	10	5	50	1.58
3548094--3548183	45	2.0	47	85	8	125	47	1	2	48	1.21
3548662--3548706	21	2.1	22	83	4	56	28	0	6	64	1.19
3549169--3549209	21	2.0	21	90	0	64	68	2	0	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3549266--3549368	31	3.4	30	71	23	81	57	2	0	39	1.14
3549979--3550021	21	2.0	21	100	0	86	32	32	9	25	1.88
3555612--3555837	114	2.0	112	86	4	314	16	21	11	50	1.76
3571675--3571700	2	13.0	2	100	0	52	0	50	0	50	1.00
3577794--3577824	2	16.0	2	93	6	55	51	0	0	48	1.00
3579691--3579720	15	2.1	14	93	6	51	23	0	0	76	0.78
3579693--3579733	20	2.0	21	85	4	57	26	0	0	73	0.84
3579759--3579836	32	2.6	29	80	13	93	52	2	2	42	1.28
3579768--3579847	32	2.5	33	85	6	101	51	3	2	42	1.33
3579824--3579875	20	2.4	23	78	18	67	44	3	0	51	1.19
3587524--3587556	14	2.4	14	95	5	59	57	15	15	12	1.65
3588026--3588071	24	1.9	24	82	8	58	63	13	8	15	1.52
3589914--3589964	24	2.1	24	85	7	68	60	1	0	37	1.08
3589906--3589970	29	2.4	26	82	14	78	63	1	0	35	1.04
3589914--3589974	24	2.4	25	78	19	65	60	1	0	37	1.07
3609547--3609604	3	17.7	3	86	10	71	62	3	1	32	1.22
3609695--3609755	25	2.3	26	75	13	63	60	3	0	36	1.13
3610768--3610839	37	2.0	35	92	7	119	20	8	36	34	1.83
3612901--3612944	22	2.0	22	86	8	63	45	11	6	36	1.67
3613643--3613695	21	2.6	21	88	11	83	47	0	0	52	1.00
3613643--3613694	22	2.5	22	93	6	90	48	0	0	51	1.00
3617338--3617380	22	2.0	22	85	0	59	41	16	9	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3618657--3618697	20	2.0	20	100	0	82	36	4	19	39	1.73
3619196--3619255	18	3.3	18	65	17	52	30	13	15	41	1.85
3624375--3624411	18	2.1	18	89	0	56	45	0	0	54	1.00
3625481--3625511	13	2.3	13	94	5	53	29	0	0	70	0.87
3629781--3629862	41	2.0	41	92	0	137	25	12	23	39	1.89
3633882--3633913	15	2.1	15	94	0	55	21	21	6	50	1.71
3636531--3636571	16	2.5	16	84	15	57	68	4	0	26	1.10
3636923--3636953	13	2.3	13	94	5	53	29	0	0	70	0.87
3641221--3641302	41	2.0	41	92	0	137	25	14	23	36	1.93
3648699--3648751	26	1.9	29	85	11	76	50	1	1	45	1.23
3649344--3649416	4	19.0	4	71	13	55	56	1	0	42	1.08
3649360--3649409	11	4.8	10	77	20	50	58	2	0	40	1.10
3649344--3649415	26	2.7	26	89	2	99	56	1	0	41	1.07
3653691--3653771	41	2.0	41	95	2	146	48	4	2	44	1.37
3654122--3654151	15	2.1	14	93	6	51	13	10	0	76	1.01
3658715--3658742	2	14.0	2	100	0	56	50	0	0	50	1.00
3664625--3664664	21	2.0	21	85	5	55	30	0	2	67	1.04
3667349--3667404	20	2.8	21	81	10	64	21	5	1	71	1.15
3672173--3672221	18	2.7	18	81	9	55	75	4	6	14	1.14
3672186--3672220	18	1.9	18	94	0	61	74	5	8	11	1.22
3672150--3672213	32	2.0	32	85	14	87	76	7	1	14	1.07
3674345--3674425	21	3.7	22	74	14	69	34	4	17	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3674677--3674754	22	3.6	21	69	8	57	28	1	16	53	1.51
3674689--3674778	44	2.0	44	80	4	101	24	4	17	53	1.62
3674825--3674874	17	2.9	17	79	5	57	42	12	14	32	1.82
3674931--3675011	18	4.6	18	80	7	94	40	12	9	37	1.76
3674931--3674999	36	1.9	36	88	2	104	42	14	8	34	1.77
3678793--3679308	60	8.7	58	88	7	722	33	13	8	45	1.73
3678793--3679309	58	8.7	57	87	7	680	33	13	8	45	1.73
3678793--3679314	238	2.2	237	92	5	871	33	13	8	45	1.74
3679382--3679446	12	5.7	11	73	18	53	81	4	1	12	0.91
3681185--3681223	2	19.5	2	94	0	69	53	0	46	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190