genome.fa.s223.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  166  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26997000--26997061	20	3.1	19	79	9	70	45	3	3	48	1.34
26997000--26997061	10	6.2	10	73	14	56	45	3	3	48	1.34
27003955--27004024	34	2.0	35	83	10	90	58	0	0	41	0.98
27004173--27004212	21	1.9	21	89	0	62	45	17	20	17	1.86
27005740--27006175	211	2.1	211	90	1	678	30	16	23	30	1.96
27010307--27010371	24	2.7	23	84	13	78	23	1	56	18	1.49
27010308--27010363	12	4.7	12	82	4	69	23	1	57	17	1.50
27010368--27010402	9	3.9	9	92	0	52	0	14	57	28	1.38
27015704--27015728	1	25.0	1	100	0	50	0	0	0	100	0.00
27018245--27018302	29	2.0	29	96	0	107	17	6	25	50	1.71
27024394--27024439	23	2.0	23	86	0	65	34	23	17	23	1.96
27028134--27028226	42	2.2	44	81	11	104	55	0	1	43	1.06
27030802--27030861	29	2.1	29	87	0	84	51	5	1	41	1.33
27034974--27035010	11	3.5	11	82	14	51	29	2	0	67	1.04
27035000--27035038	18	2.1	19	86	13	55	28	7	5	58	1.47
27035050--27035160	39	2.8	39	83	2	125	43	10	7	38	1.67
27035334--27035358	9	2.8	9	100	0	50	24	0	0	76	0.80
27035762--27035792	3	10.3	3	100	0	62	67	0	0	32	0.91
27038757--27038789	16	2.0	17	88	5	50	51	0	0	48	1.00
27039957--27040112	83	1.8	83	86	6	224	28	24	19	27	1.98
27041456--27041482	11	2.5	11	100	0	54	37	7	0	55	1.28
27042794--27042935	62	2.3	62	90	0	221	41	8	9	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27042831--27042948	62	2.0	60	86	6	168	44	8	6	39	1.61
27047662--27047753	21	4.4	21	78	5	96	31	11	10	45	1.76
27053887--27053932	17	2.9	16	87	6	58	45	4	0	50	1.21
27054299--27054331	16	2.1	16	94	5	59	63	0	0	36	0.95
27058742--27058898	62	2.5	62	82	6	167	37	12	10	38	1.79
27058826--27059219	125	3.1	125	78	4	384	35	14	12	37	1.84
27061189--27061240	21	2.5	21	81	6	61	17	19	21	42	1.89
27063108--27063140	7	4.6	7	92	7	57	81	0	3	15	0.80
27064073--27064115	17	2.7	15	82	13	50	74	0	0	25	0.82
27067654--27067696	19	2.3	19	88	4	70	79	2	16	2	0.95
27068031--27068073	8	5.5	8	81	13	54	81	0	16	2	0.79
27068034--27068066	14	2.4	14	94	0	57	84	0	15	0	0.61
27068031--27068099	22	3.1	22	80	12	79	79	0	14	5	0.90
27068029--27068089	8	8.1	8	76	20	51	78	0	14	6	0.94
27069256--27069616	25	15.5	24	67	17	199	42	10	12	34	1.78
27069256--27069749	46	10.4	47	79	10	466	42	10	12	35	1.77
27069550--27069665	61	1.9	61	94	0	205	43	8	12	35	1.72
27069504--27069710	107	1.9	107	86	1	290	44	9	12	34	1.73
27069625--27069789	21	7.4	21	71	16	93	43	6	13	35	1.71
27069462--27069749	153	1.9	153	86	1	416	43	10	12	34	1.76
27070048--27070086	20	2.0	20	89	0	60	33	15	23	28	1.95
27070050--27070144	42	2.3	42	81	3	111	31	12	21	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27070206--27070243	16	2.4	16	86	0	58	39	10	13	36	1.79
27070429--27070554	42	3.0	42	76	11	132	22	11	19	46	1.82
27071740--27072830	294	3.8	287	76	7	770	37	14	14	33	1.86
27071990--27072830	294	2.9	293	79	3	895	37	14	13	33	1.86
27072577--27073120	283	1.9	279	79	4	610	36	16	13	33	1.87
27078110--27078158	24	2.1	23	88	7	73	42	0	4	53	1.20
27078560--27078584	2	12.5	2	100	0	50	52	0	0	48	1.00
27082223--27082249	2	13.5	2	100	0	54	51	0	48	0	1.00
27083552--27083581	15	2.0	15	93	0	51	56	0	3	40	1.16
27088372--27088601	15	16.9	14	66	25	102	53	1	1	43	1.19
27088369--27088602	8	30.1	8	66	18	102	54	1	1	42	1.18
27088394--27088601	7	29.4	7	66	23	66	53	1	1	43	1.18
27088650--27088728	17	4.6	17	70	19	65	41	1	1	55	1.16
27088783--27088844	33	2.0	31	87	9	90	48	20	0	30	1.50
27090185--27090227	22	2.0	22	85	0	59	6	0	23	69	1.12
27091541--27091620	40	2.0	40	90	4	126	47	22	15	15	1.82
27097613--27097863	127	2.0	125	96	1	457	26	13	23	36	1.92
27102412--27102542	66	2.0	66	95	0	235	39	16	16	27	1.90
27105500--27105536	2	19.0	2	94	5	67	0	51	0	48	1.00
27108478--27108527	2	25.0	2	95	0	91	0	48	0	52	1.00
27118804--27118838	14	2.6	14	90	4	54	65	2	11	20	1.37
27128676--27128724	12	3.9	12	78	5	53	24	8	22	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27130619--27130649	12	2.6	12	100	0	62	70	12	9	6	1.31
27136800--27136838	20	2.0	20	84	0	51	38	5	7	48	1.54
27136800--27136840	22	2.0	20	85	9	55	36	4	7	51	1.51
27136926--27136977	26	2.0	27	88	3	79	42	3	0	53	1.19
27136934--27136987	18	2.9	18	72	5	54	42	1	0	55	1.10
27138059--27138088	13	2.2	14	94	5	53	43	0	0	56	0.99
27138311--27138353	14	3.0	14	79	3	50	62	0	0	37	0.95
27140591--27140669	37	2.1	37	95	0	140	26	8	12	51	1.69
27143513--27143561	24	2.0	26	84	15	68	36	2	16	44	1.59
27143993--27144068	32	2.3	32	95	2	134	14	11	21	52	1.73
27146230--27146255	2	13.0	2	100	0	52	50	0	0	50	1.00
27156715--27156836	51	2.4	52	82	5	133	45	9	9	36	1.69
27158999--27159024	3	8.7	3	100	0	52	69	0	0	30	0.89
27165175--27165204	2	15.0	2	100	0	60	50	0	50	0	1.00
27167029--27167156	64	2.0	63	93	1	220	38	4	8	48	1.55
27172179--27172262	43	2.0	43	87	0	123	35	20	8	35	1.83
27177079--27177115	2	18.5	2	100	0	74	0	0	48	51	1.00
27178767--27178808	16	2.6	16	85	7	59	38	2	9	50	1.48
27178760--27178819	16	3.8	15	78	10	57	38	1	10	50	1.46
27183870--27183896	2	13.5	2	100	0	54	51	0	0	48	1.00
27191896--27191929	11	2.9	12	86	8	52	85	0	14	0	0.60
27191905--27191935	14	2.1	15	94	5	55	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27191902--27191936	13	2.9	12	88	12	54	85	0	14	0	0.59
27191967--27192030	26	2.7	23	72	27	62	70	1	26	1	1.05
27191981--27192032	20	2.7	17	78	21	50	71	1	25	1	1.07
27191973--27192033	6	10.2	6	78	7	52	72	1	24	1	1.03
27193260--27193289	15	2.0	15	100	0	60	53	33	0	13	1.40
27194918--27194969	13	4.2	13	75	9	54	51	1	0	46	1.12
27194865--27194974	42	2.7	40	79	14	100	49	2	0	48	1.15
27203115--27203144	15	2.1	15	93	6	53	26	20	16	36	1.93
27207693--27207859	86	2.0	83	85	7	228	65	15	2	16	1.37
27207831--27207886	20	2.9	19	75	20	53	80	8	3	7	1.01
27208113--27208156	16	2.8	16	82	6	54	81	2	15	0	0.78
27210652--27210676	2	12.5	2	100	0	50	52	0	0	48	1.00
27213691--27213732	13	3.2	13	82	3	57	85	0	4	9	0.72
27214349--27214387	16	2.4	17	87	8	55	84	0	7	7	0.77
27218721--27218774	24	2.3	21	75	22	54	46	9	5	38	1.59
27221789--27221846	12	4.8	12	76	4	53	44	29	8	17	1.78
27221810--27221858	24	2.1	24	84	3	64	42	24	8	24	1.81
27222575--27222804	124	1.8	125	85	2	329	39	12	11	36	1.79
27222693--27223363	187	3.6	187	84	3	873	40	11	12	36	1.79
27222693--27223394	374	1.9	371	85	3	976	40	11	11	35	1.78
27229261--27229316	21	2.7	21	76	10	62	50	16	17	16	1.79
27229960--27230081	34	3.6	34	76	10	97	43	18	7	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27232026--27232062	18	2.1	18	100	0	74	35	5	21	37	1.77
27244583--27244685	53	1.9	53	100	0	206	40	15	9	33	1.80
27246336--27246458	47	2.6	47	81	0	129	33	4	18	43	1.72
27247917--27247962	9	5.2	9	81	2	58	67	8	13	10	1.42
27248052--27248077	1	26.0	1	100	0	52	100	0	0	0	0.00
27248238--27248279	20	2.1	20	86	8	59	64	0	0	35	0.94
27248238--27248278	21	2.0	20	85	4	55	65	0	0	34	0.93
27248456--27248501	22	2.1	22	88	4	67	52	4	2	41	1.33
27248640--27248670	15	2.1	15	93	0	53	87	3	6	3	0.75
27248830--27249082	132	2.0	125	83	12	316	53	3	7	35	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190