genome.fa.s223.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  184  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31417099--31417158	10	6.1	10	75	11	52	45	0	1	53	1.10
31417099--31417158	20	3.0	20	75	4	68	45	0	1	53	1.10
31417180--31417215	19	1.9	19	94	5	65	66	2	0	30	1.06
31423016--31423107	29	3.1	29	78	7	87	54	13	7	25	1.64
31424956--31424989	11	2.8	12	86	13	52	67	0	0	32	0.91
31424981--31425015	18	1.9	18	88	0	52	57	0	0	42	0.99
31425022--31425093	31	2.4	29	79	11	74	50	0	0	50	1.00
31425033--31425080	12	3.9	12	86	5	69	54	0	0	45	0.99
31425034--31425084	18	2.8	18	78	3	57	56	0	0	43	0.99
31425606--31425747	64	2.2	65	80	8	148	42	4	7	45	1.54
31425770--31425996	62	3.7	61	72	9	165	45	7	7	39	1.59
31426026--31426058	17	2.0	16	94	5	57	42	0	0	57	0.98
31431915--31431959	24	1.9	23	82	13	56	40	2	0	57	1.11
31432469--31432493	13	1.9	13	100	0	50	52	0	0	48	1.00
31433206--31433272	35	2.0	33	86	11	93	49	2	4	43	1.38
31440506--31440593	47	1.9	45	86	4	122	21	19	13	45	1.84
31452640--31452687	2	26.0	2	84	16	68	45	0	0	54	0.99
31452640--31452687	11	4.3	12	82	17	68	45	0	0	54	0.99
31452638--31452687	12	3.8	13	85	15	75	46	0	0	54	1.00
31452638--31452679	7	6.0	7	89	10	68	45	0	0	54	0.99
31452638--31452690	26	2.0	28	88	7	83	47	0	0	52	1.00
31453993--31454027	18	1.9	18	100	0	70	5	22	31	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31456562--31456597	2	18.0	2	100	0	72	0	50	0	50	1.00
31463541--31463594	27	2.0	26	82	13	65	55	7	1	35	1.39
31464486--31464541	20	2.8	21	78	5	62	42	3	0	53	1.18
31464728--31464780	27	2.0	27	85	7	72	35	3	1	58	1.27
31465487--31465558	37	2.0	36	83	8	92	59	1	1	37	1.15
31465534--31465590	23	2.5	22	83	5	69	49	1	3	45	1.29
31470844--31470887	22	2.0	22	95	0	79	43	13	11	31	1.80
31489935--31489963	3	9.7	3	100	0	58	34	0	0	65	0.93
31490797--31490830	16	2.2	15	89	5	50	70	8	0	20	1.13
31520789--31520834	20	2.3	19	82	17	58	32	2	4	60	1.28
31524014--31524053	2	20.0	2	100	0	80	50	50	0	0	1.00
31529278--31529337	25	2.3	27	75	18	65	51	0	3	45	1.17
31529597--31529635	14	3.0	13	88	7	53	61	0	0	38	0.96
31530404--31530487	37	2.2	37	85	6	107	58	4	2	34	1.32
31530442--31530487	19	2.4	19	82	10	58	63	6	0	30	1.20
31530465--31530518	15	3.6	14	80	19	56	59	5	1	33	1.31
31530462--31530518	29	1.9	28	83	16	71	59	5	1	33	1.30
31533752--31533790	19	2.1	19	85	9	53	25	0	0	74	0.82
31534779--31534812	11	3.1	11	95	0	59	64	5	8	20	1.43
31540274--31540321	24	2.0	24	87	0	69	25	16	8	50	1.73
31555530--31555619	45	2.0	45	95	4	164	36	5	28	28	1.80
31562061--31562131	5	13.8	5	85	8	63	11	4	5	78	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31562061--31562132	26	2.8	26	79	10	85	11	4	5	79	1.04
31562105--31562144	18	2.2	18	86	0	53	12	7	5	75	1.18
31562311--31562356	16	2.5	20	86	13	64	32	6	13	47	1.68
31566381--31566419	18	2.1	19	90	4	62	79	0	5	15	0.90
31567388--31567528	45	3.1	45	78	9	142	37	8	13	40	1.75
31567663--31567737	23	3.3	23	66	14	57	36	5	10	48	1.61
31567898--31568028	17	7.7	17	72	3	75	38	12	10	37	1.79
31567898--31568009	34	3.3	34	78	2	118	38	13	10	37	1.79
31567882--31568013	68	2.0	68	83	4	169	39	15	10	34	1.82
31568361--31568469	31	3.4	31	68	12	94	24	20	11	43	1.85
31568348--31568689	65	5.2	65	80	4	307	23	20	11	44	1.83
31568856--31569698	43	19.5	42	80	4	762	31	14	13	40	1.85
31569985--31570039	3	18.7	3	96	3	103	34	0	0	65	0.93
31571085--31571148	5	11.8	5	77	21	58	14	4	3	78	1.04
31571085--31571160	17	4.2	17	73	12	62	13	5	3	77	1.08
31571083--31571150	33	2.1	32	86	10	95	13	4	2	79	1.00
31572382--31572432	24	2.1	24	96	0	93	31	9	11	47	1.73
31572701--31572736	3	12.0	3	100	0	72	66	0	0	33	0.92
31574333--31574394	15	4.5	15	73	22	55	32	6	0	61	1.21
31574331--31574428	40	2.4	40	77	13	103	35	6	1	57	1.31
31575199--31575252	25	2.2	25	82	0	63	46	1	5	46	1.37
31577945--31578023	27	3.1	25	76	16	65	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31577961--31578007	15	2.8	18	75	24	57	57	0	0	42	0.98
31578003--31578062	32	1.9	31	82	3	75	53	3	0	43	1.17
31582215--31582253	2	19.5	2	100	0	78	51	0	48	0	1.00
31584641--31584694	28	2.0	28	85	10	76	57	3	5	33	1.40
31587653--31587707	24	2.3	24	81	15	69	43	9	40	7	1.64
31600933--31600975	14	3.2	13	81	15	52	65	2	0	32	1.06
31601161--31601197	2	18.5	2	100	0	74	51	0	0	48	1.00
31602012--31602059	22	2.1	23	84	3	62	37	0	2	60	1.09
31602071--31602106	11	3.5	11	85	14	58	27	0	0	72	0.85
31602671--31602746	33	2.3	34	81	9	93	42	1	2	53	1.23
31602767--31602835	36	1.9	36	82	11	88	39	0	0	60	0.97
31603186--31603240	14	4.1	14	73	19	55	43	0	0	56	0.99
31604200--31604244	23	2.0	23	81	0	54	37	2	2	57	1.23
31605614--31605885	148	1.8	150	85	7	392	18	35	25	19	1.95
31607280--31607304	13	1.9	13	100	0	50	40	20	0	40	1.52
31608433--31608482	12	3.9	13	77	12	59	38	0	0	62	0.96
31614997--31615043	24	2.0	24	82	0	58	38	0	0	61	0.96
31615667--31615708	14	3.0	14	80	10	50	61	0	0	38	0.96
31615667--31615743	28	2.7	29	78	8	77	58	0	0	41	0.98
31615682--31615778	51	1.9	49	81	8	115	53	0	0	46	1.00
31619754--31619959	105	2.0	104	85	6	283	44	16	13	25	1.84
31626823--31626954	3	44.0	3	70	6	61	28	28	7	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31626855--31626954	15	6.7	15	73	13	73	30	29	7	34	1.84
31629388--31629474	42	2.1	42	100	0	174	31	13	19	35	1.91
31634637--31634680	22	2.0	22	95	0	79	31	11	13	43	1.80
31635200--31635284	23	3.6	23	88	4	116	15	27	17	40	1.89
31638932--31638975	22	2.0	22	90	0	70	34	11	11	43	1.77
31657271--31657295	5	5.0	5	100	0	50	60	0	40	0	0.97
31664205--31664269	31	2.1	31	97	0	121	26	21	7	44	1.79
31670349--31670435	43	2.0	43	93	0	147	14	17	17	50	1.78
31671308--31671350	22	2.0	22	90	9	70	44	9	0	46	1.35
31671590--31671668	25	3.1	25	78	5	70	21	25	12	40	1.88
31672610--31672651	21	2.0	21	81	9	50	33	9	16	40	1.81
31675363--31675405	22	2.0	22	95	0	77	34	9	9	46	1.68
31675552--31675599	25	1.9	26	83	8	64	20	18	4	56	1.58
31678875--31678923	22	2.5	19	77	22	57	48	0	0	51	1.00
31679024--31679078	23	2.3	24	81	3	58	41	0	0	58	0.98
31692511--31692550	20	2.0	20	85	9	55	65	0	27	7	1.20
31694592--31694635	23	1.9	23	86	9	63	27	2	0	70	0.99
31697377--31697432	28	2.0	28	89	3	85	42	5	0	51	1.24
31697435--31697493	29	2.0	29	87	6	84	23	1	20	54	1.54
31699218--31699264	21	2.1	23	88	7	71	42	0	2	55	1.12
31699260--31699315	24	2.4	24	85	8	71	46	1	8	42	1.45
31699462--31699509	16	3.0	16	78	0	51	43	4	0	52	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31701761--31701799	12	3.1	13	85	14	55	38	0	10	51	1.36
31702906--31702956	25	2.0	25	100	0	102	37	11	23	27	1.90
31729022--31729082	31	2.0	31	87	6	88	36	9	4	49	1.58
31731801--31732248	59	7.7	57	81	5	481	37	12	6	43	1.67
31731801--31732248	118	3.8	117	89	3	629	37	12	6	43	1.67
31732265--31732339	5	14.4	5	77	18	66	77	0	5	17	0.95
31732264--31732339	17	4.8	16	72	26	72	76	0	6	17	0.99
31732265--31732336	6	11.5	6	76	15	58	77	0	5	16	0.94
31732260--31732329	21	3.2	21	82	13	88	75	0	7	17	1.01
31732265--31732336	12	6.3	11	78	12	74	77	0	5	16	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190