genome.fa.s24.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  101  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31234359--31234423	15	4.2	15	82	7	67	44	1	1	52	1.19
31234445--31234530	10	9.1	9	71	13	66	34	1	4	59	1.26
31234445--31234510	27	2.3	29	87	7	91	31	1	4	62	1.25
31248704--31248761	26	2.2	26	85	11	75	48	3	20	27	1.66
31254252--31254331	25	3.2	24	75	16	74	28	17	27	26	1.98
31254278--31254483	25	8.2	26	75	9	153	32	17	28	20	1.96
31271077--31271127	26	2.0	26	96	0	93	29	35	23	11	1.90
31270983--31271205	103	2.2	104	92	2	369	31	31	18	17	1.95
31278065--31278286	104	2.1	104	93	1	374	31	31	19	17	1.95
31279528--31279634	27	4.0	27	80	2	108	42	19	14	22	1.88
31281149--31281203	26	2.0	28	86	6	78	27	0	1	70	0.97
31289757--31289800	19	2.3	19	100	0	88	43	4	25	27	1.74
31292715--31292885	80	2.1	81	85	3	229	40	19	19	20	1.92
31292715--31292885	27	6.4	27	84	2	211	40	19	19	20	1.92
31296766--31296896	30	4.3	31	75	13	103	38	3	17	41	1.65
31307985--31308009	13	1.9	13	100	0	50	88	0	0	12	0.53
31319418--31319451	14	2.3	15	90	5	52	38	0	20	41	1.53
31327658--31327688	16	1.9	16	93	0	53	74	3	0	22	0.96
31328144--31328194	19	2.7	18	90	6	75	68	0	1	29	1.00
31335239--31335288	26	1.9	26	87	0	73	52	4	12	32	1.57
31336686--31336740	19	3.1	18	77	10	60	29	21	20	29	1.98
31336932--31336975	18	2.4	18	92	0	70	43	15	15	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31339750--31339799	9	6.0	9	84	11	63	30	0	2	68	1.01
31339747--31339798	26	2.1	26	89	7	81	26	0	3	69	1.06
31339754--31339799	17	2.9	16	87	6	67	28	0	2	69	1.00
31343796--31343857	21	3.0	21	93	4	101	37	9	16	37	1.81
31343795--31343866	19	3.7	19	89	7	108	34	12	16	36	1.87
31349528--31349561	6	5.8	6	93	3	52	82	2	14	0	0.79
31350782--31350925	44	3.3	44	71	3	128	20	25	28	25	1.99
31350860--31350995	44	3.1	43	71	8	139	25	22	28	24	1.99
31350779--31350997	88	2.5	88	89	1	314	23	23	28	23	1.99
31350826--31350964	44	3.2	44	69	6	120	23	27	26	23	2.00
31356427--31356834	43	9.3	42	68	11	192	26	22	25	25	2.00
31356394--31356816	88	4.8	88	91	0	657	25	23	25	25	2.00
31356819--31357159	44	7.8	44	82	6	359	31	14	24	30	1.94
31356776--31357189	131	3.1	131	81	6	453	31	15	24	28	1.96
31356394--31356940	176	3.1	174	82	3	614	27	21	24	26	1.99
31356394--31356880	264	1.9	263	87	0	688	27	22	24	25	2.00
31356394--31356945	264	2.1	263	82	4	657	27	21	24	26	1.99
31356819--31357115	89	3.4	88	86	1	391	31	13	24	30	1.94
31362702--31362729	14	2.0	14	100	0	56	21	14	21	42	1.88
31366394--31366454	31	2.0	29	84	6	77	24	3	13	59	1.49
31369661--31369714	24	2.2	24	90	0	81	37	16	16	29	1.91
31372264--31372406	45	3.2	44	83	7	182	23	23	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31375512--31375549	20	1.9	20	88	0	58	13	2	10	73	1.19
31375922--31375962	23	1.9	22	85	14	59	53	4	2	39	1.35
31376702--31376769	31	2.2	31	84	5	93	32	13	13	41	1.83
31380130--31380165	14	2.3	17	86	13	51	5	41	0	52	1.24
31386946--31387229	57	5.1	57	89	4	393	30	18	7	43	1.76
31392582--31392624	21	2.0	21	81	0	50	30	30	4	34	1.78
31394247--31394321	26	2.9	26	89	0	87	44	18	16	21	1.87
31394479--31394565	27	3.3	27	85	6	124	19	14	19	45	1.85
31407137--31407181	18	2.5	18	88	0	63	37	11	22	28	1.88
31422194--31422289	27	3.6	27	77	5	104	18	26	16	38	1.92
31422303--31422431	45	2.9	45	89	0	195	24	20	13	41	1.88
31422303--31422414	22	4.9	24	66	23	71	24	20	13	41	1.88
31422372--31422435	23	2.9	22	71	17	60	21	20	10	46	1.81
31429754--31429794	22	1.9	21	90	5	64	51	2	7	39	1.43
31429876--31429915	21	1.9	21	84	0	53	37	7	5	50	1.53
31433062--31433303	50	4.7	49	84	6	277	26	21	29	23	1.99
31436186--31436247	33	1.9	33	87	6	92	30	0	3	66	1.08
31436186--31436235	14	3.1	17	83	16	70	34	0	4	62	1.14
31447564--31447775	47	4.6	47	91	4	333	28	29	8	33	1.86
31447981--31448141	40	4.1	39	77	9	121	24	27	21	26	1.99
31453292--31453374	41	2.0	41	100	0	166	39	9	28	21	1.85
31455630--31456640	44	23.2	44	64	16	257	29	19	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31455624--31456685	132	8.1	132	91	1	1683	29	19	25	25	1.99
31455624--31456685	519	2.0	522	90	2	1691	29	19	25	25	1.99
31461139--31461165	14	1.9	14	100	0	54	48	7	14	29	1.71
31472137--31472182	23	2.0	23	100	0	92	39	4	21	34	1.73
31474579--31474657	37	2.1	37	90	0	122	25	31	18	24	1.98
31474776--31475334	49	11.6	49	92	1	882	28	28	9	33	1.88
31478263--31478386	58	2.1	58	92	0	203	26	10	28	34	1.89
31493598--31493628	12	2.6	12	94	0	53	35	19	16	29	1.93
31494041--31494098	29	2.0	29	93	0	98	25	1	25	46	1.62
31494356--31494500	76	1.9	76	94	0	254	33	15	20	31	1.93
31496155--31496206	21	2.5	21	87	0	77	26	11	30	30	1.92
31498197--31498277	42	2.0	42	88	7	123	49	2	20	27	1.62
31509643--31509693	19	2.8	18	81	18	61	68	3	1	25	1.17
31509714--31509757	18	2.4	19	84	3	63	77	2	6	13	1.07
31513710--31513756	17	2.8	17	74	3	51	46	0	0	53	1.00
31522308--31522366	10	5.2	11	70	22	50	49	13	0	37	1.43
31522299--31522364	13	5.5	13	72	26	65	46	13	1	37	1.53
31522299--31522373	23	3.3	23	90	0	114	48	13	1	37	1.51
31528479--31528508	12	2.4	13	94	5	53	20	20	6	53	1.67
31528708--31528949	50	4.7	50	75	6	175	24	26	21	28	1.99
31537676--31537712	4	10.0	4	83	16	53	18	0	0	81	0.70
31537674--31537712	11	3.5	11	100	0	78	17	0	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31537676--31537712	7	5.0	8	84	15	53	18	0	0	81	0.70
31543912--31544231	44	7.3	44	66	5	171	28	28	21	20	1.98
31543960--31544270	44	7.1	43	65	12	150	27	26	23	21	1.99
31543815--31544294	264	1.8	264	88	0	746	29	26	22	21	1.99
31543815--31544294	88	5.5	88	87	1	665	29	26	22	21	1.99
31544308--31544599	44	6.8	44	83	5	373	28	17	25	28	1.98
31544308--31544557	126	2.0	126	95	0	446	29	17	25	27	1.97
31544957--31545062	44	2.4	43	78	6	106	29	16	20	33	1.95
31548774--31548817	12	3.8	12	82	8	56	2	13	0	84	0.73
31548774--31548814	8	5.4	8	80	11	50	2	12	0	85	0.70
31563855--31563960	53	2.0	53	83	0	131	35	11	24	28	1.90
31564086--31564184	29	3.3	29	69	8	90	31	17	26	25	1.97
31564086--31564340	61	4.2	61	79	3	253	35	14	24	26	1.93
31564077--31564311	122	1.9	122	81	2	285	37	14	23	24	1.92
31564295--31564372	32	2.4	32	84	0	102	29	14	26	29	1.95
31564229--31564431	93	2.2	93	81	1	246	34	12	25	27	1.92
31576244--31576277	16	2.1	16	100	0	68	29	5	32	32	1.81
31576673--31576782	39	2.8	39	91	0	175	43	11	13	30	1.80
31580357--31580511	76	2.0	77	96	2	285	44	10	8	36	1.70
31595893--31595941	25	2.0	25	84	11	66	38	16	14	30	1.88
31602850--31602898	20	2.4	20	80	10	55	16	28	22	32	1.95
31605334--31605372	13	2.8	13	85	11	51	2	0	15	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31608215--31608446	115	2.0	115	99	0	455	40	10	11	37	1.76
31610773--31610800	5	5.6	5	100	0	56	0	17	0	82	0.68
31616329--31616365	11	3.6	11	79	20	53	59	0	0	40	0.97
31616321--31616379	19	3.1	19	73	11	66	64	0	0	35	0.94
31633733--31633813	30	2.7	30	90	5	121	38	22	1	38	1.62
31635339--31635850	75	6.7	75	87	2	684	29	15	21	33	1.94
31635339--31635850	227	2.2	228	87	3	733	29	15	21	33	1.94
31636040--31636124	29	2.9	29	81	11	102	38	18	2	40	1.64
31636077--31636133	29	2.0	29	85	0	78	38	19	3	38	1.69
31637420--31637491	29	2.6	29	82	12	105	31	25	4	38	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226