genome.fa.s24.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  139  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43076429--43076532	18	5.6	18	73	20	56	56	1	25	15	1.49
43078009--43078094	41	2.1	41	93	0	145	29	16	17	37	1.91
43078877--43078952	38	2.0	38	100	0	152	31	28	15	23	1.96
43082404--43082525	50	2.4	50	81	5	129	24	28	18	27	1.98
43082432--43082574	50	2.7	52	79	10	166	25	31	18	24	1.97
43085707--43085783	40	1.9	40	97	0	145	40	22	19	18	1.92
43094495--43094541	20	2.3	20	85	0	67	29	36	12	21	1.91
43098884--43098930	20	2.3	20	81	0	58	29	34	12	23	1.92
43102938--43102989	24	2.2	24	96	0	95	23	26	23	26	2.00
43103312--43103438	41	3.1	41	93	0	218	29	18	17	34	1.94
43108970--43109023	12	4.5	12	76	6	56	57	3	9	29	1.47
43108970--43109008	13	3.1	13	81	7	53	56	2	7	33	1.41
43108970--43109023	23	2.2	25	87	6	76	57	3	9	29	1.47
43110283--43110334	15	3.2	16	81	8	70	65	0	28	5	1.16
43110279--43110347	21	3.2	21	74	10	59	65	0	30	4	1.12
43115044--43115113	25	2.8	25	82	0	86	24	21	17	37	1.94
43117981--43118056	37	2.1	37	100	0	152	36	18	21	23	1.95
43118563--43118608	3	15.3	3	86	8	58	4	34	0	60	1.16
43122100--43122284	50	3.7	49	75	9	133	28	22	27	22	1.99
43123899--43124022	49	2.5	49	85	3	160	34	18	22	24	1.96
43123930--43124010	25	3.3	25	79	8	103	37	17	20	24	1.94
43125111--43125232	54	2.3	54	88	2	174	31	9	14	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43125616--43125654	19	2.1	19	95	0	69	28	10	12	48	1.74
43125791--43125822	10	3.1	11	86	13	50	40	0	15	43	1.47
43126956--43126984	10	2.7	11	94	5	51	72	10	0	17	1.11
43127915--43127956	18	2.3	18	80	8	50	66	4	14	14	1.40
43129751--43129789	19	2.1	19	95	0	69	28	10	12	48	1.74
43136180--43136220	21	1.9	22	90	5	66	65	4	0	29	1.13
43145650--43145702	23	2.4	22	76	20	56	9	18	1	69	1.25
43151815--43151879	23	2.8	23	90	0	103	32	26	4	36	1.77
43166234--43166259	9	2.9	9	100	0	52	34	11	7	46	1.69
43178402--43178448	20	2.3	20	85	0	67	21	12	36	29	1.91
43189342--43189396	20	2.7	19	81	10	65	36	14	23	25	1.93
43191060--43191091	15	2.1	16	94	5	57	6	21	0	71	1.07
43191124--43191153	15	1.9	16	93	6	53	3	16	0	80	0.85
43202650--43202684	18	1.9	18	88	11	54	22	20	0	57	1.41
43213946--43213992	20	2.3	20	85	0	67	29	36	12	21	1.91
43217356--43217395	18	2.2	18	86	4	53	12	27	0	60	1.33
43227209--43227393	79	2.3	81	84	7	236	25	27	22	24	2.00
43227209--43227393	40	4.7	40	83	7	234	25	27	22	24	2.00
43229294--43229323	11	2.7	11	100	0	60	26	0	16	56	1.40
43230335--43230378	22	2.0	22	95	0	79	34	4	36	25	1.76
43231436--43231500	29	2.2	31	86	10	91	32	9	21	36	1.85
43232596--43232644	10	4.9	10	78	9	55	26	30	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43232596--43232642	20	2.3	20	89	7	69	25	31	17	25	1.97
43239049--43239073	12	2.1	12	100	0	50	44	8	16	32	1.76
43242450--43242493	22	2.0	22	95	0	79	25	36	4	34	1.76
43246994--43247043	18	2.5	20	87	9	68	74	2	20	4	1.08
43248255--43248329	33	2.2	34	90	2	116	38	6	12	42	1.68
43250350--43250488	68	2.0	68	100	0	278	38	17	10	33	1.83
43257940--43257984	21	2.1	21	88	8	65	15	6	2	75	1.11
43257941--43257984	11	4.3	10	80	13	54	15	6	2	75	1.12
43262496--43262534	10	3.8	10	93	3	60	12	2	2	82	0.89
43262496--43262542	11	4.3	11	83	8	60	14	4	4	76	1.09
43264836--43264879	22	2.0	22	95	0	79	25	36	4	34	1.76
43273308--43273351	21	2.1	21	100	0	88	31	9	18	40	1.81
43288015--43288386	143	2.6	142	89	1	564	28	22	22	27	1.99
43288214--43288463	98	2.5	98	84	0	311	28	22	20	28	1.98
43288281--43288490	98	2.1	98	84	0	249	31	20	20	27	1.97
43291756--43292210	47	9.6	47	93	3	743	32	8	29	29	1.87
43291756--43292210	143	3.2	143	93	3	760	32	8	29	29	1.87
43291756--43292210	190	2.4	190	94	1	779	32	8	29	29	1.87
43293457--43293502	22	2.1	22	100	0	92	45	4	13	36	1.63
43293594--43293696	43	2.4	43	100	0	206	22	15	35	26	1.94
43293678--43293751	29	2.6	29	89	4	105	25	16	32	25	1.96
43294064--43294339	40	6.9	40	80	3	245	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43295171--43295221	6	8.3	6	75	12	50	15	5	0	78	0.93
43315052--43315121	11	6.5	11	80	3	52	68	8	5	17	1.35
43315052--43315121	22	3.2	21	73	4	59	68	8	5	17	1.35
43315373--43315433	30	2.0	30	87	0	86	49	1	1	47	1.21
43316481--43316523	15	2.9	15	93	3	70	6	2	25	65	1.30
43316481--43316523	14	3.0	14	93	3	68	6	2	25	65	1.30
43317730--43317782	3	17.7	3	88	0	79	33	0	33	32	1.58
43323625--43323765	56	2.7	53	90	6	207	26	21	29	21	1.99
43326361--43326448	44	2.0	44	93	0	149	19	6	39	34	1.78
43326690--43326775	27	3.2	28	83	6	115	40	18	18	22	1.91
43326949--43326999	26	2.1	24	82	10	59	13	23	23	39	1.91
43329879--43330145	104	2.6	104	94	1	464	18	20	30	30	1.96
43337434--43337484	26	2.0	26	96	0	93	11	23	35	29	1.90
43337356--43337621	103	2.6	103	93	0	451	18	20	30	30	1.96
43339137--43339548	137	3.0	138	88	3	638	39	7	6	46	1.59
43340604--43340633	15	2.0	15	93	0	51	50	0	36	13	1.42
43343349--43343428	32	2.5	32	95	2	144	27	2	28	41	1.69
43346759--43346804	23	2.0	23	100	0	92	21	8	13	56	1.63
43346993--43347031	21	1.9	21	84	5	53	17	7	7	66	1.40
43349704--43349743	20	2.0	20	90	0	62	50	12	10	27	1.72
43349692--43349758	34	1.9	35	87	3	100	46	11	8	32	1.72
43349727--43349766	14	2.9	14	84	0	53	42	17	7	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43351621--43351676	16	3.3	17	80	7	69	62	0	1	35	1.06
43351623--43351671	25	1.9	26	88	12	75	59	0	2	38	1.09
43352884--43352942	24	2.5	24	81	10	77	64	6	5	23	1.38
43352960--43353010	25	2.0	25	88	0	75	29	5	1	62	1.29
43359844--43359869	9	2.9	9	100	0	52	46	0	0	53	1.00
43365209--43365265	28	2.0	28	96	0	105	29	24	15	29	1.96
43379685--43379739	20	2.8	20	88	0	83	25	29	16	29	1.97
43381740--43381773	12	2.8	12	86	4	50	70	5	2	20	1.21
43381740--43381774	13	2.8	13	91	4	54	68	5	2	22	1.24
43381824--43381862	19	2.1	19	85	9	53	84	0	10	5	0.76
43384291--43384345	20	2.8	20	88	0	83	25	29	16	29	1.97
43399939--43399991	26	2.0	26	100	0	106	47	15	22	15	1.82
43400548--43401140	47	12.4	47	94	2	997	30	29	8	32	1.86
43400501--43401140	241	2.7	239	94	2	1118	29	29	8	32	1.86
43405281--43405465	40	4.7	40	87	6	234	26	27	22	24	2.00
43412234--43412304	36	2.0	36	88	0	106	30	26	12	29	1.93
43414268--43414414	25	6.0	25	70	20	85	38	22	24	14	1.92
43418177--43418221	21	2.2	20	84	11	56	4	22	4	68	1.25
43428988--43429114	59	2.2	59	95	0	227	8	17	30	43	1.79
43429288--43429341	28	1.9	28	100	0	108	48	11	12	27	1.76
43429288--43429349	28	2.2	28	94	0	106	48	9	11	30	1.71
43429492--43429551	18	3.3	18	73	0	66	28	11	30	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43429500--43429559	27	2.2	28	82	8	79	30	11	30	28	1.92
43429500--43429559	9	6.7	9	75	7	50	30	11	30	28	1.92
43429560--43429630	36	2.0	36	94	0	124	32	30	9	26	1.89
43435382--43435421	18	2.2	17	86	8	53	32	15	10	42	1.79
43438732--43438761	10	3.0	10	95	0	51	10	0	33	56	1.32
43444091--43444117	13	2.1	13	100	0	54	29	7	22	40	1.81
43450649--43450674	9	2.9	9	100	0	52	11	0	0	88	0.52
43451069--43451253	95	1.9	96	86	3	266	33	15	18	31	1.93
43453103--43453281	93	1.9	94	91	1	297	28	10	10	50	1.70
43455425--43455473	20	2.5	20	79	0	62	16	28	16	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226