genome.fa.s24.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  189  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56962515--56962557	15	2.9	15	83	13	61	25	32	2	39	1.69
56963456--56963905	51	8.9	50	77	4	388	29	25	15	29	1.96
56963458--56963905	102	4.4	101	84	3	510	29	25	15	29	1.96
56968158--56968185	13	2.2	13	100	0	56	67	0	0	32	0.91
56968566--56968593	14	2.0	14	100	0	56	42	0	7	50	1.30
56970163--56970215	27	2.0	25	82	7	61	54	0	9	35	1.33
56985895--56985964	35	2.0	35	86	5	97	14	18	27	40	1.89
56987086--56987141	21	2.7	21	88	0	85	26	8	35	28	1.87
56989342--56989384	15	2.9	15	83	13	61	25	32	2	39	1.69
56990282--56990731	51	8.9	50	77	4	388	29	25	15	29	1.96
56990284--56990731	102	4.4	101	84	3	510	29	25	15	29	1.96
56994985--56995017	12	2.8	12	90	4	50	69	0	0	30	0.88
56995392--56995419	14	2.0	14	100	0	56	42	0	7	50	1.30
56996988--56997040	27	2.0	25	82	7	61	54	0	9	35	1.33
57005727--57005776	17	2.7	20	78	18	70	10	0	44	46	1.37
57010366--57010415	17	2.7	20	78	18	70	10	0	44	46	1.37
57014965--57015034	35	2.0	35	86	5	97	14	18	27	40	1.89
57016155--57016210	21	2.7	21	91	0	94	25	8	37	28	1.86
57018408--57018450	15	2.9	15	83	13	61	25	32	2	39	1.69
57019349--57019798	51	8.9	50	77	4	388	29	25	15	29	1.96
57019351--57019798	102	4.4	101	84	3	510	29	25	15	29	1.96
57024051--57024078	13	2.2	13	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57026049--57026101	27	2.0	25	82	7	61	54	0	9	35	1.33
57030749--57030814	13	5.1	13	83	7	89	39	27	4	28	1.76
57031672--57031718	19	2.5	19	85	0	58	40	12	2	44	1.54
57049093--57049129	15	2.4	16	82	8	51	62	0	0	37	0.96
57052803--57052831	14	2.0	15	93	6	51	82	6	3	6	0.93
57065189--57065241	27	2.0	25	82	7	61	35	9	0	54	1.33
57066813--57066840	14	2.0	14	100	0	56	50	7	0	42	1.30
57066871--57066927	21	3.0	19	74	20	57	59	3	1	35	1.25
57067221--57067248	13	2.2	13	100	0	56	32	0	0	67	0.91
57071501--57071948	102	4.4	102	84	2	512	29	15	25	29	1.96
57071501--57071943	51	8.8	50	75	7	367	29	15	25	29	1.96
57072828--57072870	15	2.9	15	83	13	61	39	2	32	25	1.69
57075070--57075122	21	2.5	21	93	0	88	30	37	9	22	1.86
57076244--57076313	35	2.0	35	86	5	97	40	27	18	14	1.89
57088347--57088375	14	2.0	15	93	6	51	82	6	3	6	0.93
57090148--57090200	27	2.0	25	82	7	61	35	9	0	54	1.33
57091772--57091799	14	2.0	14	100	0	56	50	7	0	42	1.30
57091830--57091886	21	3.0	19	74	20	57	59	3	1	35	1.25
57092174--57092206	12	2.8	12	90	4	50	30	0	0	69	0.88
57094053--57094130	36	2.1	39	92	7	135	52	7	2	37	1.44
57105701--57105763	25	2.6	24	80	5	72	17	26	20	34	1.95
57105929--57106034	25	4.3	25	76	14	80	20	27	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57105965--57106046	25	3.3	25	82	3	103	21	24	19	34	1.97
57107258--57107293	16	2.2	16	100	0	72	25	0	36	38	1.56
57107515--57107874	104	3.4	105	85	14	520	48	6	1	43	1.37
57107740--57107773	17	2.0	17	88	11	52	55	0	0	44	0.99
57107857--57107891	18	2.0	17	88	5	52	54	0	0	45	0.99
57107975--57108008	17	2.0	17	88	11	52	55	0	0	44	0.99
57107634--57108061	235	1.8	237	93	3	756	48	6	1	43	1.40
57107634--57108061	118	3.6	118	93	3	747	48	6	1	43	1.40
57111189--57111291	51	2.0	51	98	0	197	29	7	16	46	1.75
57125108--57125231	30	4.1	30	89	3	178	42	5	24	27	1.77
57125147--57125221	15	5.0	15	68	12	64	42	6	24	26	1.79
57129804--57129911	15	7.2	15	67	12	78	44	7	22	25	1.79
57129798--57129921	30	4.1	30	93	1	203	43	6	24	25	1.78
57146877--57146948	36	2.0	36	94	0	126	26	25	22	26	2.00
57153842--57154012	39	4.3	39	85	6	211	25	21	28	25	1.99
57153789--57154012	79	2.8	79	82	7	231	25	20	27	25	1.99
57153869--57154045	79	2.2	80	82	4	200	25	21	28	24	1.99
57161743--57161913	39	4.3	39	85	6	202	25	21	28	25	1.99
57161690--57161913	79	2.8	79	81	7	222	25	20	27	25	1.99
57161770--57161946	79	2.2	80	80	4	191	25	21	28	24	1.99
57165160--57165342	101	1.8	100	87	1	276	31	16	25	26	1.97
57165325--57165466	43	3.3	42	87	3	185	28	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57167918--57167960	20	2.2	20	86	0	59	48	0	6	44	1.29
57175568--57175691	43	2.9	43	83	5	153	30	27	17	24	1.97
57181834--57181981	43	3.5	43	75	8	140	29	26	16	27	1.97
57187086--57187128	22	1.9	23	85	4	61	39	2	2	55	1.25
57190128--57190158	11	2.8	11	95	0	53	19	48	3	29	1.64
57190704--57190760	18	3.2	18	92	0	96	26	24	17	31	1.97
57194804--57194834	11	2.8	11	95	0	53	19	48	3	29	1.64
57199981--57200038	29	2.0	29	96	0	107	37	5	17	39	1.72
57217257--57217323	14	5.2	13	70	22	52	34	5	0	59	1.22
57218611--57218786	46	3.8	46	77	4	192	21	21	29	27	1.98
57218608--57218779	93	1.8	93	92	0	290	21	22	29	26	1.99
57234306--57234368	20	3.2	20	70	17	69	47	11	9	31	1.71
57239514--57239541	3	9.3	3	100	0	56	67	0	32	0	0.91
57244343--57244372	14	2.1	14	93	0	51	40	0	43	16	1.48
57244891--57244938	22	2.3	22	85	7	64	60	8	4	27	1.44
57244953--57244994	18	2.3	19	83	8	59	42	2	0	54	1.13
57250136--57250460	30	10.8	30	86	0	416	42	16	9	31	1.80
57250126--57250460	90	3.7	90	86	2	460	42	15	9	31	1.80
57253077--57253135	27	2.0	29	87	12	86	40	10	27	22	1.85
57278145--57278465	44	7.5	42	73	11	192	29	21	21	27	1.98
57278317--57278432	43	2.7	43	85	2	135	26	24	25	24	2.00
57279903--57279940	3	12.7	3	88	0	58	28	2	2	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57283404--57283447	24	2.0	22	86	13	63	70	4	2	22	1.17
57285738--57285779	3	14.0	3	100	0	84	33	0	0	66	0.92
57293764--57294055	52	5.5	52	72	4	201	31	19	16	32	1.94
57293771--57294101	106	3.1	103	79	8	317	32	18	15	33	1.92
57296384--57296418	18	1.9	18	88	0	52	14	5	14	65	1.44
57305063--57305114	24	2.2	24	89	0	77	55	9	1	32	1.43
57307026--57307077	24	2.2	24	89	0	77	55	9	1	32	1.43
57311724--57311756	17	1.9	17	93	0	57	66	9	0	24	1.20
57317895--57317954	29	2.1	28	81	9	68	33	3	0	63	1.11
57326168--57326201	9	3.7	9	96	4	59	20	0	2	76	0.92
57327236--57327293	30	1.9	30	89	0	89	10	31	41	17	1.83
57330031--57330086	15	3.7	15	76	9	60	50	0	17	32	1.47
57334004--57334030	14	1.9	14	100	0	54	92	7	0	0	0.38
57335639--57335688	18	2.8	18	73	11	50	70	0	2	28	0.99
57345241--57345296	29	1.9	29	88	0	85	25	12	12	50	1.75
57359161--57359193	15	2.2	15	94	0	57	75	3	6	15	1.11
57362883--57362923	11	3.7	11	80	0	55	19	14	9	56	1.66
57363628--57363811	92	2.0	91	85	8	244	25	18	17	39	1.92
57364058--57364273	110	2.0	110	85	1	299	34	18	18	29	1.94
57369234--57369478	128	1.9	128	86	0	346	36	13	21	29	1.91
57370988--57371028	20	2.0	21	85	9	57	43	0	31	24	1.54
57371066--57371102	9	4.1	9	92	0	65	29	10	13	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57371154--57371183	14	2.1	14	93	0	51	26	20	16	36	1.93
57376910--57376954	22	2.0	22	82	0	54	53	15	17	13	1.73
57376847--57376998	42	3.6	42	76	5	144	45	17	20	17	1.86
57378472--57378529	30	1.9	30	92	0	98	27	22	24	25	2.00
57378642--57378713	26	2.8	26	84	0	90	37	19	22	20	1.94
57378886--57379139	27	9.4	27	82	5	318	19	17	18	45	1.86
57382805--57382874	23	3.0	23	76	12	72	22	12	24	40	1.89
57390535--57390588	25	2.2	25	83	9	67	22	16	7	53	1.67
57391785--57391983	40	4.7	41	71	12	136	27	20	23	28	1.99
57391827--57392024	44	4.6	43	74	9	145	29	19	22	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226