genome.fa.s24.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  110  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34281937--34282005	27	2.7	25	84	4	84	26	27	20	26	1.99
34287126--34287176	17	2.7	20	73	17	54	25	13	17	43	1.86
34288442--34288511	23	3.0	23	80	13	72	40	1	2	55	1.23
34293585--34293767	43	4.3	43	87	2	244	24	25	18	32	1.97
34295894--34295938	12	3.8	12	90	0	72	28	2	17	51	1.58
34295887--34295945	24	2.5	24	89	5	86	27	1	18	52	1.55
34295897--34295951	24	2.5	22	85	8	67	27	1	21	49	1.60
34296079--34296132	15	3.1	18	74	17	60	61	1	0	37	1.07
34296133--34296213	9	9.0	9	73	15	69	38	1	16	44	1.55
34296137--34296215	16	5.0	16	76	14	83	39	1	15	44	1.54
34303913--34304063	28	5.4	28	91	1	214	33	28	12	25	1.92
34308176--34308231	22	2.5	22	78	13	62	39	35	0	25	1.56
34308495--34308545	23	2.2	24	85	3	68	31	45	5	17	1.72
34308842--34308924	41	2.0	40	83	2	103	28	31	16	22	1.96
34308929--34309791	114	7.6	113	83	4	1056	27	25	19	27	1.99
34308929--34309789	113	7.6	113	83	3	1048	27	25	19	27	1.99
34308933--34309791	231	3.8	227	85	3	1118	27	25	19	27	1.99
34313788--34313845	25	2.3	25	72	0	62	43	18	20	17	1.89
34314291--34314348	28	2.1	27	81	6	64	43	20	5	31	1.74
34314304--34314361	28	2.1	28	96	0	107	44	18	3	32	1.67
34314341--34314371	16	1.9	16	100	0	62	51	22	6	19	1.69
34318477--34318501	13	1.9	13	100	0	50	64	8	0	28	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34318565--34318604	6	7.2	6	78	16	50	77	0	22	0	0.77
34318565--34318604	11	3.6	11	93	0	71	77	0	22	0	0.77
34319545--34319592	13	3.8	12	81	10	51	85	0	8	6	0.74
34319546--34319592	6	7.7	6	86	13	51	85	0	8	6	0.75
34319552--34319592	19	2.2	19	86	8	57	85	0	9	4	0.73
34320846--34321486	50	12.8	50	84	1	746	34	22	18	24	1.97
34321486--34321537	23	2.3	23	89	0	77	42	23	7	26	1.81
34322020--34322056	8	4.6	8	96	0	56	18	0	0	81	0.70
34330275--34330386	50	2.2	50	80	4	127	29	23	26	20	1.99
34330277--34330386	25	4.4	25	75	7	80	30	21	27	20	1.98
34332742--34332851	23	4.9	23	67	6	64	43	23	16	16	1.87
34332736--34332843	46	2.3	46	90	0	162	43	25	15	15	1.86
34332700--34332832	69	1.9	68	81	1	158	42	24	16	17	1.89
34333334--34333417	25	3.4	25	80	3	89	30	15	21	32	1.94
34335116--34335153	17	2.2	17	90	0	58	18	21	36	23	1.95
34347436--34347480	19	2.3	21	82	17	62	17	4	0	77	0.92
34366460--34366527	8	8.5	8	80	13	70	26	22	7	44	1.79
34366460--34366534	15	4.7	15	77	18	80	25	22	6	45	1.77
34369632--34369795	81	2.0	81	100	0	328	35	14	17	32	1.90
34371139--34371182	23	1.9	23	100	0	88	36	13	4	45	1.64
34373165--34373311	27	5.5	26	76	13	95	43	16	19	20	1.88
34373191--34373295	54	1.9	54	83	11	135	42	19	20	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34373273--34373416	27	5.4	27	83	0	173	36	18	21	24	1.95
34373438--34373570	24	5.5	24	88	0	158	27	8	21	42	1.81
34373745--34373931	32	5.8	32	86	2	241	22	19	19	38	1.93
34373745--34373944	96	2.1	95	85	2	267	22	19	19	39	1.93
34378098--34378171	38	1.9	38	100	0	148	32	18	13	35	1.90
34396493--34396635	73	2.0	72	88	1	214	26	29	14	29	1.95
34396504--34396654	73	2.1	73	85	0	203	27	27	13	31	1.94
34403748--34403780	6	5.5	6	100	0	66	81	0	0	18	0.68
34411413--34411515	54	1.9	53	90	2	161	25	26	33	15	1.95
34412922--34412961	14	2.8	14	88	3	53	15	15	0	70	1.18
34414127--34414189	27	2.3	27	86	0	90	19	20	33	26	1.96
34420632--34420674	19	2.3	18	81	14	52	53	2	0	44	1.13
34425853--34425904	26	1.9	26	84	7	68	42	9	1	46	1.47
34425947--34425985	20	1.9	20	84	5	51	35	2	7	53	1.43
34427720--34427744	11	2.3	11	100	0	50	8	24	28	40	1.83
34429080--34429191	26	4.7	25	70	22	89	50	1	0	47	1.11
34429183--34429229	23	2.1	22	84	7	60	42	0	0	57	0.98
34435410--34435449	14	2.9	14	84	0	53	32	7	17	42	1.77
34435433--34435470	20	1.9	20	88	0	58	28	7	13	50	1.69
34440102--34440132	11	2.9	11	95	4	55	77	6	9	6	1.12
34441462--34441566	52	2.0	52	88	0	156	31	17	16	35	1.92
34444266--34444307	20	2.1	20	95	0	75	47	7	14	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34450390--34450558	42	4.0	42	77	3	153	18	21	18	40	1.91
34450410--34450579	84	2.0	84	83	0	214	16	21	19	42	1.89
34452158--34452335	27	6.6	27	84	3	205	29	28	15	26	1.96
34452179--34452334	82	1.9	81	88	3	233	29	28	15	26	1.96
34459993--34460170	27	6.6	27	84	3	205	29	28	15	26	1.96
34460014--34460169	82	1.9	81	88	3	233	29	28	15	26	1.96
34466838--34466867	8	3.8	8	95	0	51	16	23	23	36	1.94
34472437--34472480	19	2.2	20	84	4	54	63	6	4	25	1.38
34472763--34472873	57	1.9	57	98	0	213	34	7	21	36	1.81
34473151--34473190	11	3.5	12	83	10	57	32	0	0	67	0.91
34477476--34477506	16	1.9	16	93	0	53	48	0	9	41	1.36
34479605--34479788	50	3.6	50	80	5	163	27	29	17	25	1.97
34481327--34481381	20	2.9	19	75	21	62	58	0	5	36	1.21
34481319--34481408	9	9.8	9	73	20	71	54	1	4	40	1.28
34481318--34481381	20	3.5	19	74	19	55	57	0	4	37	1.19
34481477--34481554	31	2.5	32	85	6	97	50	12	6	30	1.66
34482632--34482692	30	2.0	30	90	6	97	32	11	21	34	1.89
34484045--34484111	18	3.5	18	77	18	64	44	10	14	29	1.79
34484037--34484101	22	3.1	22	75	20	68	47	10	15	26	1.78
34484739--34484940	63	3.2	63	81	6	239	28	27	17	26	1.98
34485492--34485524	4	8.5	4	93	6	59	75	0	24	0	0.80
34487979--34488013	16	2.2	16	94	0	61	8	11	0	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34490212--34490245	12	2.8	12	86	0	50	8	14	47	29	1.75
34491232--34491370	32	4.4	32	88	0	181	39	20	20	19	1.93
34491552--34491594	11	3.7	11	76	11	50	51	25	6	16	1.69
34491542--34491640	24	4.1	24	89	0	126	47	21	8	23	1.77
34491542--34491652	24	4.6	24	86	4	125	46	20	7	25	1.76
34491669--34491864	27	7.3	26	78	5	169	20	17	21	39	1.92
34491669--34491922	81	3.2	80	77	7	264	20	19	21	38	1.93
34491858--34491989	27	4.9	27	81	1	113	21	17	18	41	1.90
34491860--34491991	54	2.4	54	75	0	147	22	16	18	41	1.90
34504331--34504361	16	1.9	16	93	0	53	9	9	9	70	1.33
34505737--34505761	11	2.3	11	100	0	50	64	8	0	28	1.22
34509262--34509301	19	2.1	19	90	0	62	62	5	2	30	1.29
34511323--34511361	20	1.9	21	84	5	53	53	2	0	43	1.14
34513785--34513873	34	2.6	35	84	10	105	35	19	20	24	1.95
34523612--34523636	13	1.9	13	100	0	50	56	8	0	36	1.29
34523857--34523894	16	2.5	15	87	8	58	65	7	0	26	1.19
34528463--34528498	10	3.7	10	85	7	56	52	0	2	44	1.15
34535992--34536490	126	4.0	126	85	1	653	26	20	22	31	1.98
34537234--34537886	130	5.0	130	93	1	1119	28	6	17	48	1.71
34537234--34537886	261	2.5	261	95	1	1175	28	6	17	48	1.71
34538808--34538834	14	1.9	14	100	0	54	51	7	14	25	1.68
34550506--34550936	44	9.9	44	86	1	517	25	25	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34550506--34550931	87	4.9	87	83	4	473	25	25	19	30	1.98
34562675--34562718	23	2.0	22	82	13	54	31	20	4	43	1.72
34562949--34563039	45	2.0	45	93	0	155	32	25	17	24	1.97
34563044--34563220	51	3.5	50	79	4	194	32	29	14	23	1.94
34566926--34567023	50	2.0	50	97	0	187	31	14	16	37	1.88
34569401--34569426	12	2.2	12	100	0	52	26	0	7	65	1.20
34575106--34575179	30	2.5	30	84	0	85	22	31	32	13	1.93
34576490--34576642	75	2.0	75	92	0	252	27	13	20	39	1.89
34581845--34581930	44	2.0	44	88	0	127	47	4	10	37	1.59
34583035--34583093	29	2.0	30	86	3	84	30	1	11	55	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226