genome.fa.s24.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  134  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41697594--41697755	66	2.6	61	85	10	227	4	27	8	59	1.46
41697633--41697770	38	4.0	36	76	20	150	5	25	8	60	1.46
41697615--41697763	66	2.3	65	94	1	253	3	26	8	62	1.39
41697631--41697770	37	4.0	38	75	18	158	5	26	8	60	1.47
41698317--41698350	7	4.9	7	88	0	50	2	11	26	58	1.47
41702890--41703022	69	1.9	70	90	1	214	32	14	16	36	1.89
41704486--41705047	47	12.0	47	89	0	845	31	11	29	26	1.92
41704607--41704682	23	3.2	25	62	24	63	28	13	34	23	1.92
41704937--41705011	23	3.1	25	63	24	61	29	13	33	24	1.93
41705212--41705323	37	3.0	37	89	0	161	22	19	33	25	1.97
41707929--41708340	120	3.4	119	95	1	718	43	1	4	50	1.33
41708003--41708305	59	5.1	59	67	20	209	42	1	5	49	1.37
41708054--41708105	15	3.6	15	80	12	56	44	0	1	53	1.11
41708174--41708225	15	3.6	15	80	12	56	44	0	1	53	1.11
41708302--41708343	15	2.7	16	82	14	52	45	0	2	52	1.13
41708293--41708334	15	2.9	15	82	10	52	47	0	0	52	1.00
41714684--41714723	18	2.2	18	86	8	55	20	0	12	67	1.22
41714725--41714757	11	2.9	12	86	13	52	66	0	0	33	0.92
41715018--41715069	21	2.5	21	87	0	68	32	5	28	32	1.81
41718443--41718487	7	6.0	7	85	14	63	13	0	6	80	0.91
41718693--41719206	30	17.1	30	92	4	824	37	9	0	51	1.38
41719558--41719625	35	2.0	35	82	8	86	55	2	1	39	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41721117--41721332	41	5.2	41	90	1	335	25	19	24	31	1.98
41721616--41721657	21	2.0	21	86	4	59	28	0	21	50	1.49
41721818--41721991	82	2.1	82	84	1	231	27	1	24	46	1.62
41721842--41722001	82	2.0	82	88	2	241	26	1	26	45	1.64
41722001--41722045	21	2.1	21	83	0	54	26	0	35	37	1.57
41722387--41722420	16	2.1	16	88	5	50	70	2	2	23	1.15
41722673--41722734	27	2.3	27	86	5	81	64	12	3	19	1.41
41727707--41727752	21	2.2	21	88	7	67	26	2	47	23	1.63
41728443--41728526	33	2.5	33	78	12	84	34	44	3	17	1.67
41728441--41728526	40	2.2	40	82	0	109	33	44	3	18	1.67
41729359--41729477	41	2.9	41	87	1	159	27	23	22	26	2.00
41729525--41729647	40	3.1	39	82	3	147	23	18	20	37	1.94
41729697--41729866	30	6.0	30	85	11	259	39	10	0	50	1.37
41729697--41729850	82	1.9	84	94	2	276	38	10	0	51	1.36
41730346--41730374	15	1.9	15	100	0	58	34	20	17	27	1.95
41735543--41735942	33	11.4	33	66	24	155	33	28	18	20	1.96
41735560--41735706	43	3.7	42	75	21	170	32	27	17	22	1.96
41735533--41735743	76	2.8	76	94	0	359	33	27	17	21	1.96
41735719--41735770	27	1.9	27	96	0	95	28	30	21	19	1.97
41735642--41735971	101	3.2	102	92	1	545	32	27	19	20	1.97
41737783--41737822	19	2.1	19	90	0	62	60	0	17	22	1.37
41740590--41740685	39	2.5	39	91	0	147	10	59	2	28	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41740590--41740721	39	3.4	39	84	2	113	11	56	1	30	1.43
41740626--41740733	39	2.8	39	81	0	126	10	57	1	30	1.42
41740662--41740749	39	2.2	39	82	6	97	13	55	1	29	1.46
41744150--41744199	18	2.5	20	87	9	68	72	4	20	4	1.18
41745945--41746024	33	2.4	34	81	6	103	36	6	12	45	1.67
41761967--41762072	48	2.2	48	85	9	137	14	24	1	59	1.45
41762048--41762132	18	4.6	17	72	16	62	16	27	3	52	1.59
41763134--41763193	21	2.9	21	76	0	57	8	8	5	78	1.09
41763155--41763179	12	2.1	12	100	0	50	16	0	8	76	1.02
41764663--41764709	20	2.3	20	81	0	58	23	12	34	29	1.92
41774920--41774995	23	3.3	23	67	17	57	11	26	1	60	1.39
41775029--41775071	14	2.9	15	86	13	54	9	16	2	72	1.21
41775915--41776048	44	3.1	44	61	25	104	36	8	26	27	1.86
41778101--41778487	47	8.1	47	87	4	540	31	12	29	26	1.93
41778297--41778371	23	3.2	23	62	23	57	29	10	32	28	1.90
41778101--41778487	98	4.0	96	89	4	586	31	12	29	26	1.93
41778461--41778551	46	2.0	46	84	0	119	32	9	31	25	1.89
41778101--41778536	145	3.0	140	83	6	493	31	12	29	26	1.93
41778696--41778840	37	3.9	37	96	0	254	24	19	31	25	1.98
41780150--41780191	23	1.9	23	85	9	61	9	16	2	71	1.23
41786605--41786649	18	2.4	18	81	3	54	4	24	4	66	1.29
41787819--41787897	40	2.0	40	87	5	115	30	20	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41788368--41788409	7	5.9	7	83	5	57	23	0	33	42	1.55
41788360--41788402	22	2.0	22	90	0	68	23	0	32	44	1.54
41788397--41788512	57	2.0	58	81	5	137	21	0	35	43	1.53
41788444--41788484	14	2.9	14	85	0	55	17	0	26	56	1.41
41794717--41794796	25	3.2	26	79	8	78	20	27	21	31	1.98
41801745--41801774	14	2.1	15	93	6	53	36	30	6	26	1.82
41817607--41817661	28	2.0	28	89	7	85	30	7	10	50	1.64
41822395--41822449	28	2.0	28	85	7	76	32	7	10	49	1.65
41832393--41832465	30	2.4	30	100	0	146	34	10	15	39	1.82
41832726--41832800	33	2.2	34	92	2	125	44	10	6	38	1.66
41834558--41834596	18	2.2	17	82	13	51	5	17	2	74	1.12
41837356--41837388	7	4.7	7	96	0	57	27	3	15	54	1.55
41838042--41838081	18	2.2	18	95	0	71	22	30	7	40	1.81
41855043--41855079	18	2.0	19	89	5	58	75	2	16	5	1.10
41862081--41862305	40	5.7	40	84	5	278	25	28	21	24	1.99
41862083--41862305	119	1.9	120	85	6	310	25	27	21	25	2.00
41864180--41864254	33	2.2	33	88	6	107	41	13	6	38	1.70
41865988--41866026	18	2.2	17	82	13	51	5	17	2	74	1.12
41868785--41868826	23	2.0	23	86	13	63	11	14	2	71	1.24
41868879--41868942	25	2.5	25	80	12	76	25	12	1	60	1.40
41870261--41870322	31	2.0	31	100	0	124	29	19	16	35	1.93
41873589--41873663	33	2.2	34	83	6	100	38	5	12	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41876618--41876654	8	4.9	8	87	12	51	56	29	0	13	1.37
41877660--41877698	20	1.9	21	84	5	53	46	0	12	41	1.42
41886530--41886572	19	2.3	19	88	8	61	76	0	20	2	0.89
41892794--41892869	25	3.1	25	74	9	66	50	6	17	26	1.70
41899485--41899534	18	2.5	20	87	9	68	74	2	20	4	1.08
41901240--41901320	33	2.5	34	86	6	114	38	7	12	41	1.71
41903552--41903722	79	2.2	79	82	2	209	26	28	19	25	1.99
41903552--41903722	40	4.3	40	84	3	195	26	28	19	25	1.99
41903596--41903774	80	2.2	81	83	3	220	25	28	20	25	1.99
41911060--41911282	39	5.7	40	82	8	242	25	27	21	25	1.99
41911214--41911291	40	1.9	41	82	10	97	26	28	20	24	1.99
41922993--41923022	13	2.3	13	94	0	51	33	3	13	50	1.58
41923117--41923308	50	3.8	50	88	3	280	26	23	30	19	1.98
41925913--41925991	37	2.1	37	88	4	115	25	30	18	25	1.98
41926110--41926518	47	8.6	47	92	3	656	29	30	8	31	1.87
41926110--41926518	190	2.1	191	94	0	712	29	30	8	31	1.87
41934871--41934900	13	2.3	13	94	0	51	33	3	13	50	1.58
41934995--41935237	50	4.8	50	88	0	342	25	23	31	20	1.98
41964373--41964414	20	2.1	20	90	0	66	38	14	21	26	1.91
41967786--41968010	40	5.7	40	81	6	224	25	27	21	25	1.99
41967942--41968019	40	1.9	41	82	10	97	26	28	20	24	1.99
41970624--41970673	18	2.6	19	87	9	66	4	20	2	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41970630--41970673	19	2.4	17	82	14	52	4	18	2	75	1.09
41974544--41975568	521	2.0	520	85	2	1414	30	16	16	36	1.91
41979192--41979370	85	2.1	85	97	0	340	36	8	28	26	1.85
41980652--41980795	76	1.9	74	90	5	227	30	13	29	26	1.94
41980725--41980948	92	2.4	93	90	3	344	31	10	31	26	1.90
41980728--41980969	47	5.2	47	90	4	348	32	9	31	26	1.88
41982021--41982164	76	1.9	74	90	5	227	30	13	29	26	1.94
41982191--41982312	22	5.3	22	62	21	61	33	11	29	25	1.91
41982097--41982340	47	5.2	47	93	2	375	32	9	31	26	1.89
41984770--41984844	38	2.0	38	86	5	107	30	18	26	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226