genome.fa.s24.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  136  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42360366--42360399	16	2.1	16	89	10	52	23	0	32	44	1.54
42361261--42361317	9	6.8	8	80	7	60	49	17	0	33	1.47
42361234--42361317	34	2.3	36	86	8	109	48	15	1	34	1.53
42361261--42361317	17	3.4	17	78	9	71	49	17	0	33	1.47
42361413--42361484	17	4.2	17	72	19	60	44	12	1	41	1.51
42361413--42361462	8	6.0	8	75	25	50	46	12	2	40	1.52
42361424--42361484	25	2.4	25	86	8	79	44	11	1	42	1.50
42361990--42362215	43	5.3	43	87	0	335	27	19	30	22	1.98
42363360--42363387	14	2.0	14	100	0	56	35	7	0	57	1.26
42377352--42377642	41	7.0	41	77	17	312	32	26	18	23	1.97
42377351--42377642	84	3.5	84	95	0	532	32	26	18	23	1.97
42377643--42377840	51	3.9	51	82	7	260	29	27	17	25	1.98
42377748--42377830	26	3.3	26	61	19	66	31	27	15	25	1.96
42377646--42377868	101	2.2	102	84	7	285	29	27	16	26	1.97
42383936--42383968	15	2.2	15	89	10	50	27	21	12	39	1.88
42387424--42387484	23	2.7	23	84	0	68	40	16	18	24	1.90
42387417--42387484	23	3.0	23	78	4	66	41	16	16	26	1.88
42387504--42387672	23	7.2	23	73	4	149	40	14	18	26	1.89
42387494--42387712	47	4.7	47	93	0	357	42	13	18	26	1.87
42387518--42387688	24	7.2	24	73	6	152	40	13	18	26	1.88
42388553--42388674	43	2.9	42	77	14	124	30	28	19	21	1.98
42389821--42389849	14	2.0	15	93	6	51	51	20	0	27	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42395457--42395508	23	2.3	23	86	0	68	36	15	15	32	1.89
42395472--42395530	23	2.6	23	83	0	64	42	18	13	25	1.87
42395553--42395742	23	8.1	23	72	5	148	41	13	18	26	1.88
42395572--42395742	47	3.6	47	93	1	290	40	12	18	27	1.87
42395595--42395718	24	5.2	24	72	7	110	40	13	19	26	1.89
42396581--42396704	43	2.9	42	80	14	130	30	28	19	21	1.98
42404542--42404588	23	2.0	23	95	0	85	23	10	17	48	1.77
42405960--42406012	15	3.3	15	70	14	52	37	3	7	50	1.49
42405956--42406030	33	2.3	33	100	0	150	41	2	9	46	1.50
42405975--42406031	18	3.3	18	71	14	66	45	1	8	43	1.45
42410597--42410821	50	4.5	50	85	1	299	22	29	22	25	1.99
42410580--42410821	99	2.4	100	86	1	324	22	29	22	25	1.99
42410916--42410945	13	2.3	13	94	0	51	50	13	3	33	1.58
42418150--42418342	50	3.8	50	85	0	260	22	30	22	24	1.99
42420458--42420495	20	2.0	20	94	5	69	23	28	15	31	1.96
42432446--42432519	25	3.0	25	76	13	80	25	22	21	29	1.99
42432447--42432538	25	3.7	25	78	8	71	27	21	21	29	1.99
42445481--42445535	16	3.4	16	71	14	58	41	3	3	50	1.37
42445478--42445543	33	2.0	33	100	0	132	39	3	6	51	1.42
42449048--42449310	40	6.6	40	87	3	316	24	20	28	26	1.99
42449087--42449345	80	3.3	80	84	3	238	25	20	28	25	1.99
42454459--42454554	44	2.2	42	82	12	106	31	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42456474--42456950	27	17.7	27	82	3	388	42	19	14	22	1.88
42463429--42463544	48	2.4	49	95	2	209	38	1	35	24	1.66
42463456--42463540	25	3.5	25	68	18	79	37	2	35	24	1.69
42464890--42464941	21	2.5	22	75	9	54	48	3	28	19	1.66
42465323--42465359	17	2.2	17	90	0	56	24	18	8	48	1.75
42466135--42466200	33	2.0	33	82	5	80	27	16	24	31	1.96
42466170--42466280	28	4.0	28	84	0	150	30	18	24	27	1.97
42466415--42466674	27	9.7	27	84	5	249	19	17	19	43	1.88
42466427--42466674	54	4.6	54	83	6	290	18	17	18	45	1.86
42466424--42466674	81	3.1	80	86	4	344	18	17	18	44	1.87
42471128--42471169	22	2.1	19	86	13	57	45	2	0	52	1.13
42482728--42482919	29	6.6	29	80	4	181	35	21	15	26	1.94
42482726--42482894	88	1.9	87	85	5	234	36	21	14	27	1.93
42482729--42482916	88	2.1	88	82	4	220	36	21	15	26	1.93
42484402--42484668	32	8.4	32	79	3	229	37	21	20	20	1.95
42484712--42484775	27	2.4	27	85	12	80	31	23	25	20	1.98
42484840--42484912	24	3.1	23	72	5	65	52	23	4	20	1.64
42484967--42485263	27	11.0	27	80	4	196	20	19	19	39	1.92
42485091--42485266	27	6.5	27	85	7	205	18	20	20	40	1.92
42488835--42488882	24	2.0	24	100	0	96	37	8	12	41	1.73
42491326--42492065	368	2.0	369	88	1	1099	33	13	19	33	1.91
42492523--42492561	19	2.1	18	95	4	69	33	2	0	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42492685--42492727	22	2.0	22	86	9	61	55	0	2	41	1.12
42492683--42492730	11	4.3	12	75	15	50	54	0	2	43	1.12
42496632--42496813	40	4.6	40	84	6	228	25	28	21	24	1.99
42496634--42496813	79	2.3	80	83	7	224	25	28	22	24	1.99
42497984--42498162	85	2.1	85	100	0	358	26	27	8	37	1.85
42503424--42503458	17	2.1	17	94	0	61	51	5	14	28	1.65
42508381--42508405	7	3.6	7	100	0	50	28	12	0	60	1.32
42508528--42508571	21	2.1	21	91	0	70	11	18	29	40	1.85
42508632--42509029	43	9.3	43	74	6	216	26	28	20	23	1.99
42508863--42509048	43	4.3	42	76	8	160	29	29	17	23	1.97
42508882--42509054	86	2.0	87	85	3	233	29	28	16	25	1.96
42509064--42509196	67	2.0	67	98	0	257	36	17	10	35	1.84
42509442--42509554	21	5.4	21	85	0	127	5	42	17	34	1.72
42509525--42509671	66	2.2	66	85	4	199	12	28	18	40	1.86
42509525--42509694	66	2.6	66	83	3	191	12	27	18	41	1.87
42515110--42515240	9	15.9	9	69	16	70	35	3	16	44	1.64
42515115--42515234	16	7.9	16	66	19	78	35	2	16	45	1.61
42515131--42515247	25	4.8	25	68	8	87	35	2	15	46	1.60
42515305--42515334	13	2.3	13	100	0	60	36	0	6	56	1.26
42517845--42517897	23	2.4	22	76	20	56	9	18	1	69	1.25
42517856--42517944	18	4.8	18	69	17	56	10	23	1	65	1.30
42520768--42520813	22	2.1	22	91	0	74	43	0	8	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42520727--42520843	56	2.1	56	96	0	216	42	0	8	48	1.33
42525311--42525378	15	4.9	14	71	16	52	41	35	0	23	1.55
42525314--42525351	15	2.5	15	86	0	58	36	42	0	21	1.53
42525904--42526142	82	2.9	82	83	1	309	38	24	21	15	1.93
42525905--42526184	41	6.8	41	77	7	219	38	22	22	16	1.93
42525884--42526156	82	3.3	80	79	8	284	38	23	22	15	1.92
42526456--42526540	40	2.1	40	100	0	170	35	2	22	40	1.67
42532359--42532427	20	3.5	19	76	4	66	14	27	17	40	1.88
42532432--42532481	20	2.5	20	83	6	57	8	34	20	38	1.82
42534970--42535030	22	2.8	22	84	0	77	42	9	9	37	1.71
42536763--42536801	20	1.9	21	84	5	53	41	12	0	46	1.42
42549623--42549650	14	2.0	14	100	0	56	14	35	21	28	1.92
42550720--42550780	11	5.8	11	88	5	83	65	3	6	24	1.32
42550720--42550781	10	6.0	10	90	3	70	64	3	6	25	1.33
42550812--42550857	24	1.9	24	86	0	65	50	2	17	30	1.58
42551837--42551885	6	8.7	6	77	8	50	67	2	18	12	1.32
42551882--42551952	34	2.1	34	84	7	92	54	4	28	12	1.56
42556924--42556978	25	2.2	25	86	0	74	30	20	18	30	1.96
42558827--42558968	29	4.9	29	70	8	119	38	11	24	25	1.90
42558805--42558968	86	1.9	87	91	1	267	37	12	24	25	1.90
42572943--42572969	14	1.9	14	100	0	54	33	22	29	14	1.94
42576696--42576729	15	2.3	15	89	0	50	47	2	2	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42579481--42579523	23	1.9	22	90	4	68	53	0	0	46	1.00
42583281--42583328	23	2.1	23	84	7	62	27	8	8	56	1.57
42586109--42586190	32	2.6	32	98	0	155	32	4	6	56	1.45
42594261--42594307	23	2.1	23	84	7	62	51	12	4	31	1.59
42599644--42599697	16	3.6	15	90	5	83	20	12	5	61	1.52
42599644--42599695	15	3.4	15	97	2	95	19	11	5	63	1.47
42599735--42599777	11	3.8	12	87	12	72	16	0	6	76	0.99
42599736--42599777	22	1.9	22	100	0	84	14	0	7	78	0.95
42600769--42600815	23	2.1	23	84	7	62	51	12	4	31	1.59
42608080--42608117	20	1.9	20	84	10	51	50	5	7	36	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226