genome.fa.s24.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  215  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64186590--64186623	18	1.9	18	88	5	52	44	0	0	55	0.99
64187360--64187403	19	2.4	19	96	3	81	43	4	0	52	1.22
64190516--64190580	31	2.1	31	94	0	112	30	21	16	30	1.96
64192479--64192543	31	2.1	31	86	8	89	43	0	0	56	0.99
64192479--64192529	14	3.2	17	73	18	56	47	0	0	52	1.00
64192478--64192548	30	2.2	31	80	16	83	45	0	0	54	0.99
64192822--64192877	22	2.5	23	82	2	69	51	1	1	44	1.22
64192853--64192892	16	2.5	16	91	0	62	47	2	7	42	1.45
64192902--64193081	68	2.9	61	87	8	256	39	5	9	46	1.58
64192965--64192992	9	3.1	9	100	0	56	32	0	10	57	1.33
64192881--64193051	68	2.5	68	96	1	310	39	4	8	47	1.53
64193146--64193196	23	2.2	24	83	16	63	58	1	0	39	1.09
64193487--64193521	17	2.0	17	88	5	52	48	0	0	51	1.00
64193662--64193699	20	1.9	20	89	10	60	44	5	2	47	1.39
64193662--64193702	18	2.1	20	82	13	50	46	4	2	46	1.37
64194282--64194368	36	2.4	36	81	5	88	18	4	14	62	1.49
64198240--64198337	49	2.0	50	95	2	180	46	4	25	23	1.69
64203201--64203282	41	2.0	41	97	0	155	47	4	6	41	1.50
64205536--64205622	44	2.0	43	86	13	124	35	2	0	62	1.08
64205527--64205605	33	2.5	31	86	12	99	32	2	0	64	1.07
64205528--64205629	33	3.2	31	79	8	89	34	1	0	63	1.05
64214369--64214428	29	2.1	29	84	3	77	25	8	5	61	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64215781--64215818	14	2.7	14	88	8	51	10	7	5	76	1.15
64221895--64222381	163	3.0	161	83	4	523	33	21	19	25	1.97
64224049--64224087	20	1.9	21	89	5	62	35	2	2	58	1.25
64226209--64226236	9	3.1	9	100	0	56	78	0	0	21	0.75
64226925--64226949	13	1.9	13	100	0	50	0	12	0	88	0.53
64233002--64233033	3	10.3	3	93	6	55	31	0	0	68	0.90
64233002--64233034	13	2.6	13	95	4	59	30	0	0	69	0.88
64235330--64235368	15	2.5	16	87	4	53	56	28	0	15	1.40
64241655--64241684	3	10.3	3	92	7	53	30	0	0	70	0.88
64247181--64247211	14	2.1	15	94	5	55	25	25	0	48	1.52
64250089--64250115	2	13.5	2	100	0	54	51	0	0	48	1.00
64255290--64255367	38	2.1	38	92	0	129	44	6	12	35	1.68
64260056--64260086	14	2.1	15	94	5	55	25	25	0	48	1.52
64261593--64261626	17	2.0	17	94	0	59	44	50	0	5	1.26
64266232--64266265	17	2.0	17	94	0	59	44	50	0	5	1.26
64267904--64267947	20	2.3	18	88	7	61	34	2	0	63	1.07
64267904--64267963	20	3.1	20	81	13	56	33	1	3	61	1.22
64281201--64281243	21	2.0	21	100	0	86	27	9	18	44	1.80
64293905--64293930	3	8.7	3	100	0	52	34	0	0	65	0.93
64295439--64295469	14	2.1	15	94	5	55	25	25	0	48	1.52
64301950--64301982	16	2.1	16	88	11	50	75	6	0	18	1.00
64306001--64306167	87	1.9	87	95	0	298	31	21	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64306237--64306526	153	1.9	153	84	4	388	36	17	21	24	1.94
64307635--64307672	20	1.9	20	88	0	58	18	31	2	47	1.62
64317778--64317985	70	3.0	70	92	0	353	37	10	28	23	1.88
64318410--64318435	9	2.9	9	100	0	52	57	0	0	42	0.98
64321862--64321954	48	1.9	48	86	0	132	22	19	23	34	1.96
64324681--64324724	20	2.3	18	88	7	61	34	2	0	63	1.07
64324681--64324740	20	3.1	20	81	13	56	33	1	3	61	1.22
64325063--64325094	12	2.7	12	100	0	64	62	0	6	31	1.20
64327367--64327396	14	2.1	15	93	6	53	26	23	0	50	1.50
64333710--64333740	14	2.1	15	94	5	55	25	25	0	48	1.52
64336158--64336232	38	2.1	37	92	7	127	18	12	5	64	1.46
64338136--64338287	27	5.6	27	93	3	241	30	28	13	26	1.94
64338136--64338287	55	2.8	55	94	0	259	30	28	13	26	1.94
64340901--64340936	17	2.1	18	90	10	58	77	2	0	19	0.88
64340934--64341035	30	3.4	30	84	2	125	30	21	2	45	1.67
64341460--64341499	14	2.9	15	82	14	50	55	0	42	2	1.13
64341582--64341698	12	11.0	10	76	20	80	75	0	22	2	0.93
64341585--64341677	12	8.3	11	78	14	84	74	0	24	1	0.89
64341576--64341679	10	9.4	11	76	19	83	72	0	26	0	0.91
64341576--64341680	36	2.9	38	79	17	116	72	0	26	0	0.91
64341576--64341682	47	2.3	48	85	6	139	72	0	26	0	0.90
64341619--64341689	22	3.3	22	75	18	69	76	0	21	2	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64341788--64341828	14	3.0	13	89	7	55	75	9	14	0	1.04
64341799--64341834	14	2.6	14	91	4	56	75	5	19	0	1.00
64341793--64341841	24	2.0	25	84	11	66	71	8	20	0	1.11
64342358--64342483	17	7.3	17	67	19	64	32	12	12	42	1.81
64342388--64342544	18	8.8	18	69	12	83	32	14	10	43	1.78
64342384--64342437	16	3.2	16	82	10	72	42	11	11	35	1.76
64342432--64342535	52	2.0	53	86	1	147	31	14	9	44	1.77
64342543--64342601	17	3.5	17	80	11	59	33	3	13	49	1.59
64342543--64342652	35	3.1	35	75	7	89	35	9	12	42	1.75
64342631--64342684	17	3.2	16	76	7	54	33	16	9	40	1.80
64342560--64342657	18	5.6	18	71	14	53	33	12	12	41	1.80
64342735--64342770	17	2.2	17	90	5	56	36	8	8	47	1.64
64342841--64342881	17	2.5	16	84	4	55	31	4	7	56	1.48
64354542--64355169	75	8.5	72	71	21	278	31	16	17	34	1.93
64355142--64355349	57	3.8	53	76	14	199	29	16	18	35	1.93
64356142--64356179	20	1.9	20	88	0	58	60	0	36	2	1.11
64356259--64356341	25	3.4	24	79	15	82	69	0	28	1	0.96
64356294--64356383	22	4.0	22	76	18	87	73	0	25	1	0.90
64356275--64356325	13	4.1	13	78	16	54	72	0	27	0	0.85
64356277--64356391	46	2.5	46	79	14	128	73	0	24	1	0.92
64356276--64356388	10	10.9	10	67	20	54	73	0	24	1	0.93
64370527--64370567	21	2.0	21	85	0	55	21	29	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64374340--64374445	52	2.0	53	83	5	135	35	11	17	34	1.86
64379514--64379544	14	2.1	15	94	5	55	25	25	0	48	1.52
64380850--64380886	19	1.9	19	94	0	65	62	0	2	35	1.10
64391313--64391346	16	2.1	16	100	0	68	26	23	17	32	1.97
64396025--64396061	3	12.3	3	100	0	74	32	0	0	67	0.91
64397699--64397740	16	2.6	16	96	0	75	33	14	14	38	1.86
64399947--64399989	22	2.0	22	85	0	59	44	4	4	46	1.45
64413979--64414054	13	5.2	13	69	25	53	27	1	0	71	0.95
64413986--64414064	41	1.9	42	89	2	124	30	1	0	68	0.98
64413972--64414073	41	2.4	41	74	7	107	30	0	0	67	1.03
64417606--64417663	17	3.4	17	92	2	89	37	0	62	0	0.96
64417604--64417660	6	9.7	6	94	3	89	36	0	63	0	0.95
64418777--64418945	87	1.9	87	91	0	275	30	20	17	30	1.96
64420422--64420462	20	2.0	21	90	4	66	21	29	2	46	1.64
64420452--64420481	16	1.9	15	93	6	51	13	36	6	43	1.70
64421055--64421085	14	2.1	15	94	5	55	25	25	0	48	1.52
64427543--64427583	21	2.0	21	81	18	50	31	19	26	21	1.97
64429542--64429589	24	2.0	24	84	4	62	33	6	8	52	1.57
64438891--64438926	14	2.6	13	91	8	54	0	5	5	88	0.61
64439933--64439966	12	2.8	13	91	8	54	70	0	5	23	1.09
64439940--64439983	17	2.7	15	82	10	52	72	0	6	20	1.07
64448740--64448793	27	2.0	27	96	0	99	46	7	12	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64450202--64450232	14	2.1	15	94	5	55	25	25	0	48	1.52
64461959--64462125	87	1.9	87	92	2	282	31	21	16	30	1.96
64463589--64463629	20	2.0	21	90	4	66	19	29	4	46	1.71
64463768--64463840	36	2.0	36	100	0	146	19	19	10	50	1.76
64464259--64464289	14	2.1	15	94	5	55	25	25	0	48	1.52
64478693--64478721	14	2.0	15	93	6	51	27	24	0	48	1.51
64482697--64482751	21	2.6	21	91	8	94	27	40	9	23	1.85
64488836--64488900	5	13.2	5	81	15	82	60	1	0	38	1.07
64493967--64494001	6	5.7	6	86	6	52	14	2	0	82	0.77
64494611--64494664	22	2.5	21	75	24	58	31	7	1	59	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226