genome.fa.s24.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  194  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58539747--58539832	40	2.1	40	82	6	102	36	22	20	20	1.96
58539874--58540220	113	3.1	113	92	0	559	27	23	22	26	2.00
58540330--58540445	41	2.8	40	73	8	90	21	20	28	29	1.98
58542850--58542880	16	1.9	16	100	0	62	38	25	3	32	1.72
58544023--58544076	27	2.0	28	96	3	101	37	3	3	55	1.35
58544032--58544091	27	2.2	27	84	0	75	41	5	1	51	1.33
58544464--58544503	14	2.9	14	88	0	53	52	5	2	40	1.37
58550495--58550545	21	2.4	21	90	0	75	35	17	43	3	1.68
58550429--58550626	87	2.3	87	85	5	249	38	18	32	11	1.86
58550593--58550651	21	2.8	21	89	0	91	30	18	45	5	1.71
58550862--58550888	14	1.9	14	100	0	54	14	0	33	51	1.43
58550956--58551090	43	3.1	43	92	2	218	20	21	27	30	1.98
58551414--58551443	15	1.9	16	93	6	53	70	6	0	23	1.11
58552372--58552422	24	2.1	24	92	7	86	60	21	9	7	1.53
58557358--58557413	24	2.3	24	73	11	60	53	0	0	46	1.00
58558328--58558556	59	3.8	60	84	6	277	25	20	10	44	1.82
58558382--58558487	31	3.5	30	69	21	87	30	20	8	40	1.82
58558951--58559020	29	2.3	30	83	11	81	50	11	14	24	1.75
58563015--58563072	28	2.1	27	84	12	73	43	5	1	50	1.35
58563503--58563659	78	2.0	78	88	0	233	38	14	15	30	1.88
58565282--58565352	23	3.0	23	70	4	61	30	23	28	16	1.97
58565276--58565412	25	5.5	25	68	14	79	35	22	24	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58566995--58567061	30	2.2	31	81	2	73	56	5	10	26	1.56
58571588--58571738	25	6.1	24	72	11	83	39	23	21	16	1.92
58571647--58571737	26	3.6	25	80	4	110	36	25	21	16	1.94
58574125--58574172	25	1.9	25	95	0	87	35	18	29	16	1.93
58574125--58574179	25	2.2	25	90	0	83	36	18	29	16	1.92
58578828--58578870	21	2.0	21	95	0	77	27	0	37	34	1.57
58578851--58578883	16	2.1	16	94	0	57	33	0	36	30	1.58
58578862--58578956	45	2.1	44	88	1	136	34	5	27	32	1.79
58579118--58579152	18	2.0	17	88	5	52	54	0	0	45	0.99
58579076--58579148	27	2.7	27	76	8	76	52	2	0	45	1.15
58579037--58579308	144	1.9	147	94	3	487	46	3	2	47	1.34
58579262--58579296	18	2.0	17	88	5	52	54	0	0	45	0.99
58579282--58579460	55	3.1	54	64	22	128	49	7	2	41	1.43
58579277--58579464	61	3.1	61	68	14	190	49	6	2	41	1.41
58579245--58579467	120	1.9	120	97	0	419	49	6	2	42	1.40
58579382--58579416	18	2.0	17	88	5	52	60	0	0	40	0.97
58579461--58579509	17	3.1	15	81	16	55	46	2	6	44	1.39
58579476--58579509	17	2.0	17	100	0	68	47	0	5	47	1.26
58579542--58579735	93	2.1	91	87	5	275	47	4	4	44	1.41
58579592--58579732	47	3.1	45	67	11	115	47	4	4	43	1.44
58582912--58582959	26	2.0	25	84	15	66	43	4	12	39	1.62
58584546--58584655	40	2.8	40	97	0	211	42	15	6	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58590319--58590371	5	10.0	5	82	15	54	77	0	5	16	0.96
58590320--58590371	16	3.2	16	79	15	63	76	0	5	17	0.97
58596293--58596319	13	2.1	13	100	0	54	29	29	14	25	1.95
58600501--58600621	61	2.0	61	90	0	188	34	12	19	33	1.89
58604033--58604122	30	3.0	29	82	12	101	34	2	0	63	1.07
58604022--58604097	17	4.7	17	69	12	61	35	1	0	63	1.03
58604090--58604129	21	1.9	21	89	0	62	37	2	0	60	1.11
58604089--58604147	22	2.8	21	80	14	59	40	1	3	54	1.27
58605229--58605305	37	2.1	37	92	4	129	51	12	12	22	1.74
58608049--58608121	31	2.4	31	83	2	94	31	19	13	35	1.91
58608063--58608132	31	2.2	32	85	9	92	27	22	12	37	1.91
58615455--58615489	14	2.6	14	90	4	54	34	0	2	62	1.10
58616601--58616661	31	1.9	31	96	3	113	31	8	6	54	1.56
58626836--58627006	74	2.3	74	84	8	204	63	2	20	14	1.41
58629028--58629061	16	2.1	16	88	0	50	35	5	5	52	1.50
58630727--58630783	29	1.9	28	86	10	78	57	7	0	35	1.26
58630804--58630863	21	2.9	21	80	11	79	65	1	0	33	1.03
58630940--58630964	13	1.9	13	100	0	50	36	8	16	40	1.77
58636418--58636534	41	3.0	41	77	8	143	35	23	16	25	1.95
58637415--58637473	4	15.2	4	77	19	63	0	25	0	74	0.82
58637416--58637470	19	2.8	19	81	13	76	0	23	0	76	0.79
58645317--58645433	41	3.0	41	70	13	109	37	23	14	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58646311--58646398	6	14.3	6	73	11	72	1	20	4	73	1.07
58646311--58646356	17	2.6	17	89	6	65	0	26	0	73	0.83
58646310--58646353	23	1.9	23	86	9	63	0	25	0	75	0.81
58646326--58646385	17	3.6	17	80	12	72	0	20	6	73	1.05
58646661--58646690	15	2.0	15	100	0	60	40	6	6	46	1.56
58650223--58650283	17	3.5	17	78	8	68	27	0	0	72	0.85
58650232--58650306	27	2.7	28	85	6	107	30	0	0	69	0.89
58650229--58650283	9	6.2	9	78	14	53	23	0	0	76	0.79
58650269--58650347	20	4.1	20	71	14	76	37	0	0	62	0.96
58650253--58650338	38	2.2	38	91	6	138	33	0	0	66	0.92
58650291--58650343	26	2.0	27	85	3	72	35	0	0	64	0.94
58662530--58662570	20	2.0	20	85	4	55	48	0	0	51	1.00
58662601--58662698	30	3.2	30	74	8	117	35	1	9	54	1.39
58662558--58662735	61	2.9	61	94	0	311	33	1	7	57	1.36
58666203--58666239	19	1.9	19	88	0	56	48	5	2	43	1.40
58667035--58667128	42	2.3	42	88	3	147	45	2	0	52	1.12
58667035--58667129	40	2.3	39	87	8	136	46	2	0	51	1.12
58667132--58667203	28	2.5	28	88	6	101	33	1	2	62	1.18
58667271--58667328	20	3.0	20	80	14	59	24	1	6	67	1.25
58667281--58667339	20	2.8	20	85	10	66	23	1	8	66	1.29
58667301--58667353	20	2.7	20	85	8	72	24	0	5	69	1.09
58674168--58674216	20	2.5	19	81	12	55	65	2	0	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58674174--58674242	30	2.3	30	82	7	88	65	2	0	31	1.08
58674402--58674446	21	2.1	22	84	8	58	28	11	0	60	1.31
58674395--58674524	59	2.2	60	80	6	147	30	6	2	60	1.33
58674482--58674537	19	2.8	20	78	13	71	32	5	3	58	1.37
58674434--58674526	30	3.1	29	73	15	82	32	3	3	61	1.28
58674483--58674538	20	2.8	20	89	2	87	32	5	3	58	1.37
58674454--58674598	9	15.6	9	66	15	64	31	2	2	62	1.23
58707706--58707765	25	2.5	22	73	10	57	40	3	0	56	1.16
58707827--58707880	27	2.0	27	88	0	81	20	33	29	16	1.95
58708021--58708134	59	1.9	59	94	0	201	33	0	14	51	1.43
58708275--58708331	27	2.1	27	90	0	87	21	40	24	14	1.90
58710716--58710749	10	3.3	10	84	8	50	47	14	14	23	1.82
58712739--58712777	19	2.1	18	85	4	51	25	2	2	69	1.14
58712786--58712814	6	4.8	6	100	0	58	17	0	0	82	0.66
58713588--58713612	13	1.9	13	100	0	50	40	16	16	28	1.89
58717074--58717114	20	2.0	20	95	0	73	24	17	31	26	1.97
58718806--58718933	66	1.9	66	87	3	186	42	17	27	12	1.85
58719324--58719552	42	5.4	42	81	2	253	23	17	28	30	1.97
58719324--58719532	83	2.5	84	83	2	249	23	16	29	30	1.96
58721788--58721839	21	2.5	21	77	0	59	57	1	1	38	1.21
58722097--58722135	11	3.6	11	82	6	53	58	0	0	41	0.98
58722154--58722224	32	2.3	31	82	2	79	33	2	2	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58725011--58725048	18	2.1	18	95	0	67	0	15	47	36	1.46
58726436--58726477	21	2.0	21	85	0	57	42	0	16	40	1.48
58726940--58727012	26	2.8	26	82	10	87	16	23	23	36	1.94
58726951--58727093	25	5.8	25	69	17	66	20	25	19	34	1.96
58730530--58730605	23	3.3	23	90	0	125	30	27	21	21	1.98
58732788--58732813	12	2.2	12	100	0	52	34	26	23	15	1.94
58743266--58743328	15	4.0	16	73	10	58	38	3	9	49	1.51
58747050--58747080	15	2.1	15	93	0	53	22	9	0	67	1.19
58749097--58749142	23	2.0	22	91	4	56	56	0	0	43	0.99
58749080--58749142	25	2.6	25	87	5	85	49	3	1	46	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226