genome.fa.s24.2.7.7.80.10.50.1000.225.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  225  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67628245--67628319	30	2.7	27	88	10	107	40	18	40	1	1.59
67642528--67642597	19	3.6	19	71	9	61	32	4	1	61	1.24
67644774--67644816	13	3.1	14	84	12	54	60	0	0	39	0.97
67647284--67647384	3	33.3	3	89	2	157	61	0	3	34	1.15
67647383--67647409	3	9.0	3	100	0	54	33	0	33	33	1.58
67648566--67648593	5	5.6	5	100	0	56	17	17	0	64	1.30
67649905--67650451	110	4.9	110	94	1	916	33	20	15	30	1.94
67650564--67650606	17	2.5	17	85	7	52	74	4	4	16	1.16
67652074--67652112	20	2.0	21	90	10	64	10	20	48	20	1.78
67652438--67652817	50	7.7	50	79	5	227	25	20	22	31	1.98
67652412--67652826	100	4.2	98	80	5	374	25	20	21	32	1.98
67652493--67652766	150	1.9	145	80	5	316	25	18	22	33	1.97
67668936--67669250	109	2.9	109	87	3	456	33	18	17	29	1.94
67671515--67672286	44	17.7	44	73	10	434	26	22	21	29	1.99
67671596--67672157	87	6.4	88	72	8	427	26	22	21	29	1.99
67671515--67672152	43	14.6	44	72	9	326	26	22	21	29	1.99
67671519--67672157	174	3.7	174	91	1	969	26	22	22	29	1.99
67671911--67672197	130	2.2	130	91	1	459	27	22	21	27	1.99
67671737--67672294	304	1.8	305	89	1	886	27	22	20	29	1.98
67672033--67672294	87	3.0	89	75	7	237	28	23	18	29	1.98
67671505--67672234	348	2.1	346	83	4	952	26	22	21	30	1.98
67672297--67672851	86	6.4	87	91	2	613	25	25	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67672361--67672499	44	3.2	44	66	15	133	28	25	21	24	1.99
67672405--67672543	44	3.2	43	66	15	113	24	23	25	26	2.00
67672579--67672802	43	5.2	43	66	14	147	24	23	23	28	1.99
67678388--67678703	110	2.9	110	87	2	460	34	18	17	29	1.94
67683998--67684024	2	13.5	2	100	0	54	51	0	0	48	1.00
67691376--67691424	22	2.2	21	82	10	62	57	2	2	38	1.22
67699664--67699705	20	2.1	20	86	0	57	47	0	7	45	1.30
67700377--67700486	54	2.0	54	96	0	202	30	21	20	26	1.98
67700743--67700791	20	2.4	20	79	3	62	38	2	0	59	1.09
67707985--67708010	3	8.7	3	100	0	52	30	34	0	34	1.58
67719392--67719453	33	1.9	32	93	3	106	37	9	16	37	1.81
67727342--67727404	32	2.0	32	84	12	85	28	12	9	49	1.72
67727344--67727417	32	2.4	30	80	13	80	33	10	9	45	1.71
67733124--67733178	24	2.2	26	81	12	71	45	0	1	52	1.11
67733310--67733404	45	2.1	45	88	1	138	32	27	5	34	1.79
67733385--67733452	16	4.2	16	96	0	118	35	36	0	27	1.58
67733613--67733652	17	2.4	17	83	4	55	50	5	0	45	1.23
67740372--67740426	24	2.3	24	93	0	92	10	10	18	60	1.59
67748844--67748908	14	4.6	14	74	12	62	67	4	4	23	1.28
67748862--67748916	19	2.9	19	81	5	58	67	7	5	20	1.35
67749316--67749351	16	2.2	16	95	0	63	58	5	13	22	1.56
67752226--67752266	19	2.2	19	86	8	57	65	7	0	26	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67760773--67760801	13	2.3	13	94	5	51	27	0	6	65	1.18
67762017--67762063	23	2.0	23	84	8	60	51	8	4	36	1.52
67765022--67765060	19	2.0	20	90	9	64	33	17	2	46	1.62
67767744--67767805	31	2.0	31	81	12	74	48	6	11	33	1.65
67768181--67768215	18	1.9	18	88	0	52	65	2	8	22	1.34
67776673--67776704	2	16.0	2	100	0	64	50	0	0	50	1.00
67778313--67778353	21	1.9	22	90	5	66	68	2	4	24	1.22
67778664--67778690	2	13.5	2	100	0	54	51	0	0	48	1.00
67791318--67791356	18	2.2	18	90	4	62	43	0	12	43	1.42
67804042--67804070	14	2.1	14	100	0	58	27	0	0	72	0.85
67804782--67805006	115	2.0	115	86	6	316	46	7	4	41	1.51
67807699--67808350	232	2.8	232	94	0	1101	35	19	16	28	1.93
67808483--67808862	187	2.0	187	95	1	681	44	15	15	25	1.85
67822873--67822907	15	2.3	15	90	0	52	68	0	0	31	0.90
67823638--67823689	20	2.5	20	85	11	70	26	5	1	65	1.26
67840740--67840788	25	2.0	25	84	8	64	44	0	2	53	1.12
67841629--67841656	4	7.0	4	100	0	56	25	0	25	50	1.50
67844085--67844120	18	1.9	19	88	5	56	33	11	5	50	1.61
67854821--67854858	17	2.2	17	86	9	51	10	10	52	26	1.68
67857781--67857853	38	1.9	37	86	8	103	45	1	21	31	1.61
67860520--67860579	31	1.9	31	83	12	79	41	10	6	41	1.65
67862718--67862743	12	2.2	12	100	0	52	46	15	7	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67862792--67862856	30	2.2	29	81	10	69	43	9	4	43	1.57
67862799--67862858	30	1.9	32	86	6	88	41	8	6	43	1.61
67864579--67864762	100	1.8	99	82	3	235	35	15	15	33	1.89
67864579--67864790	100	2.1	99	79	4	219	36	14	14	34	1.87
67865729--67865775	16	2.9	17	81	9	62	25	6	17	51	1.69
67866025--67866067	22	2.0	22	81	4	52	11	23	16	48	1.78
67871450--67871478	2	14.5	2	100	0	58	51	0	0	48	1.00
67872299--67872342	15	2.6	17	79	20	56	43	4	4	47	1.44
67880904--67880963	28	2.2	27	91	8	95	15	6	11	66	1.42
67880961--67880997	5	7.4	5	93	0	65	37	2	0	59	1.12
67906051--67906112	28	2.2	29	88	2	90	61	4	1	32	1.27
67907571--67907634	30	2.1	30	88	0	92	48	10	3	37	1.54
67908216--67908255	21	1.9	21	85	10	55	42	2	0	55	1.13
67908654--67908706	25	2.2	25	83	9	67	54	0	1	43	1.11
67912792--67912846	21	2.7	21	83	11	69	58	5	1	34	1.32
67918251--67918296	20	2.4	19	82	13	51	19	4	10	65	1.41
67920230--67920266	15	2.5	15	90	0	56	64	0	5	29	1.15
67920880--67920905	3	8.7	3	100	0	52	34	0	0	65	0.93
67936962--67937000	21	1.9	20	84	5	51	46	5	0	48	1.24
67944516--67944561	17	2.7	17	79	0	56	47	6	4	41	1.49
67953462--67954958	753	2.0	753	97	0	2845	35	17	17	29	1.93
67961205--67961251	21	2.2	22	92	3	78	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67964305--67964350	17	2.5	19	83	16	62	60	0	2	36	1.09
67964353--67964410	29	2.1	29	83	6	75	55	3	1	39	1.27
67981093--67981186	44	2.1	44	96	0	170	37	13	5	43	1.67
67981165--67981208	22	2.0	22	86	4	63	38	13	6	40	1.71
67981796--67981843	13	3.7	13	85	0	69	45	25	2	27	1.64
67991558--67991601	14	2.7	18	76	20	51	2	20	2	75	1.03
67992548--67992577	13	2.3	13	100	0	60	36	10	33	20	1.86
67993430--67993454	13	1.9	13	100	0	50	8	0	24	68	1.16
67995033--67995134	41	2.5	41	87	3	143	28	19	24	27	1.99
67998201--67998257	25	2.3	25	93	0	96	31	0	19	49	1.49
67998214--67998270	25	2.3	25	90	0	87	31	1	19	47	1.60
67998213--67998311	41	2.4	41	91	0	153	31	1	21	46	1.58
67998260--67998336	25	3.1	25	94	0	127	31	0	23	45	1.53
67998198--67998344	16	8.9	16	76	11	95	32	0	20	46	1.56
67999706--67999773	34	2.0	34	88	2	102	58	13	17	10	1.62
68001140--68001343	25	8.3	25	78	10	149	30	1	22	46	1.61
68001160--68001314	41	3.8	41	81	6	206	30	1	21	45	1.63
68001147--68001357	57	3.5	58	79	14	187	30	1	22	45	1.63
68001146--68001305	82	2.0	82	96	0	293	30	1	21	46	1.62
68001140--68001310	16	10.4	16	77	9	143	30	1	21	46	1.61
68004277--68004346	34	2.1	34	97	0	131	40	12	14	32	1.84
68006428--68006468	22	1.9	21	85	5	55	43	2	9	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68010079--68010104	9	2.9	9	100	0	52	42	0	34	23	1.54
68015519--68015840	161	2.0	160	99	0	635	47	16	13	23	1.81
68015808--68015940	66	2.0	66	100	0	266	43	8	18	30	1.79
68017998--68018029	3	10.7	3	100	0	64	31	0	0	68	0.90
68018039--68018155	58	2.0	58	94	0	207	26	6	24	41	1.80
68018097--68018273	73	2.4	73	99	0	345	28	6	24	40	1.81
68022474--68022511	3	12.7	3	100	0	76	31	0	0	68	0.90
68022521--68022637	58	2.0	58	94	0	207	26	6	24	41	1.80
68025455--68025501	17	2.6	19	80	19	64	59	0	0	40	0.97
68025974--68026053	30	2.7	30	75	13	76	48	3	13	33	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226