genome.fa.s24.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  137  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42614917--42614968	25	2.1	25	100	0	104	38	3	17	40	1.68
42615418--42615456	20	2.0	20	89	0	60	51	5	2	41	1.38
42617354--42617396	21	2.1	21	87	8	63	27	11	18	41	1.85
42618674--42618792	58	2.1	58	98	0	229	44	20	16	18	1.87
42619630--42619732	52	2.0	50	85	7	136	45	11	13	29	1.79
42622946--42622987	13	3.3	12	87	12	50	33	0	0	66	0.92
42625335--42625363	3	9.7	3	100	0	58	31	0	0	68	0.89
42629276--42629364	40	2.3	40	79	14	105	31	1	1	66	1.06
42630839--42630863	11	2.3	11	100	0	50	28	8	24	40	1.83
42636087--42636126	20	2.0	21	85	5	55	32	17	15	35	1.91
42636224--42636316	19	5.1	19	70	12	77	31	10	11	46	1.75
42636205--42636326	54	2.3	54	95	0	217	32	10	14	41	1.81
42636404--42636552	74	2.0	75	89	1	228	26	5	20	47	1.71
42638429--42638480	13	3.7	13	78	16	50	75	0	19	5	1.01
42638439--42638519	36	2.2	36	80	8	94	72	1	18	7	1.14
42638473--42638525	18	2.9	18	91	0	79	67	1	22	7	1.25
42638457--42638519	6	10.2	6	72	6	54	74	1	17	6	1.10
42640155--42640194	20	2.0	21	85	5	55	32	17	15	35	1.91
42640294--42640330	19	1.9	19	94	0	65	29	8	13	48	1.71
42644539--42644727	40	4.8	40	84	1	227	13	27	19	39	1.89
42644636--42644719	20	4.3	19	71	7	60	11	32	17	38	1.87
42644539--42644727	79	2.4	80	82	0	245	13	27	19	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42647575--42647626	25	2.2	24	89	6	79	25	25	23	26	2.00
42656811--42656855	18	2.5	19	82	10	67	62	2	0	35	1.08
42659009--42659034	2	13.0	2	100	0	52	50	0	50	0	1.00
42660196--42660238	22	2.0	22	86	9	61	37	11	0	51	1.39
42660688--42660726	19	2.1	19	85	0	51	23	20	2	53	1.57
42662559--42662596	18	2.0	20	90	10	62	44	15	2	36	1.61
42672096--42672482	27	14.3	26	79	11	261	43	18	17	20	1.88
42672096--42672482	54	7.2	53	81	5	336	43	18	17	20	1.88
42672097--42672487	81	4.8	79	81	8	364	43	18	17	20	1.88
42673049--42673440	27	14.5	26	78	10	251	43	17	17	20	1.88
42673062--42673407	54	6.4	54	77	9	296	44	17	16	21	1.86
42673050--42673435	81	4.8	79	80	6	332	44	17	17	21	1.87
42671704--42673608	953	2.0	953	98	0	3684	35	17	22	25	1.95
42673600--42673655	26	2.1	27	86	3	78	16	25	25	33	1.95
42673613--42673685	26	2.8	26	89	0	101	15	24	23	36	1.93
42674968--42675056	25	3.8	25	73	21	86	46	25	16	11	1.81
42675004--42675088	20	4.0	20	72	14	80	43	25	20	10	1.83
42674979--42675079	45	2.2	45	94	0	175	42	26	20	9	1.83
42675058--42675115	20	2.8	21	80	10	57	39	20	20	18	1.92
42677505--42677554	26	2.0	26	84	7	68	38	16	6	40	1.73
42677712--42677798	25	3.5	24	77	16	88	29	18	21	29	1.97
42677732--42677809	25	3.1	25	83	0	93	32	14	23	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42686081--42686136	17	3.2	16	72	22	51	8	23	0	67	1.18
42687094--42687142	19	2.4	21	83	16	59	20	8	6	65	1.41
42690041--42690110	30	2.3	30	82	0	77	35	2	32	28	1.72
42690440--42690621	33	5.6	32	73	19	130	18	19	26	34	1.95
42690536--42690621	28	2.9	28	86	13	111	18	19	31	30	1.96
42690438--42690665	102	2.2	103	92	2	379	19	19	27	33	1.96
42698247--42698271	13	1.9	13	100	0	50	32	16	16	36	1.90
42699665--42700113	47	9.5	47	94	0	754	32	8	28	29	1.87
42709878--42709914	15	2.5	15	95	0	65	78	0	21	0	0.75
42711883--42712287	47	8.6	47	93	2	643	29	29	8	33	1.87
42730722--42730758	19	2.1	19	90	10	60	56	8	10	24	1.60
42733966--42734115	41	3.7	41	82	5	169	28	19	26	26	1.99
42738125--42738409	43	6.7	43	80	6	256	32	27	15	24	1.95
42738139--42738409	86	3.2	84	86	2	337	31	27	14	25	1.95
42738139--42738409	129	2.1	128	84	2	346	31	27	14	25	1.95
42738374--42738436	32	2.0	32	93	3	110	36	36	9	17	1.82
42744327--42744415	9	10.6	9	71	16	57	34	1	17	46	1.56
42744466--42744492	13	2.1	13	100	0	54	37	11	0	51	1.37
42749691--42749888	76	2.6	75	82	5	249	38	2	38	19	1.66
42754088--42754128	21	1.9	22	90	5	66	21	2	17	58	1.50
42756899--42756938	20	2.0	20	85	9	55	40	25	30	5	1.77
42756795--42757136	170	2.0	170	99	0	675	34	24	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42758088--42758130	16	2.7	16	89	7	61	34	0	4	60	1.17
42761393--42761443	10	5.2	9	75	25	50	33	15	27	23	1.95
42761393--42761444	20	2.6	21	90	9	90	32	17	26	23	1.96
42768926--42769068	29	4.8	29	80	8	153	38	14	24	22	1.92
42772409--42772451	13	3.3	13	93	0	68	13	27	30	27	1.95
42773242--42773353	22	5.4	22	71	12	101	33	28	18	18	1.95
42773242--42773371	60	2.2	60	87	0	179	33	28	19	18	1.95
42777608--42777660	27	2.0	27	84	0	70	35	26	20	16	1.94
42777725--42777782	24	2.5	23	80	8	64	20	5	24	50	1.69
42777846--42777905	27	2.3	27	81	16	72	20	25	21	33	1.97
42777928--42778161	32	7.4	33	78	6	216	19	20	21	38	1.94
42777925--42778161	95	2.5	93	81	4	258	19	21	21	37	1.94
42780852--42780924	38	1.9	38	88	0	110	32	30	20	16	1.95
42784656--42784804	38	3.9	36	79	11	113	45	11	9	33	1.72
42784713--42784804	38	2.4	38	88	1	130	46	10	8	33	1.70
42787860--42787910	25	2.1	25	88	3	77	41	0	33	25	1.56
42788495--42788632	27	5.2	26	74	11	118	39	22	17	20	1.92
42788502--42788634	53	2.5	54	81	6	155	39	22	17	21	1.93
42790127--42790167	20	2.0	21	90	4	66	4	17	2	75	1.08
42790127--42790174	20	2.2	22	85	10	64	4	16	2	77	1.03
42791722--42791752	9	3.4	9	100	0	62	19	12	9	58	1.62
42794344--42794400	29	2.0	29	82	6	71	29	21	0	49	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42796226--42796279	18	3.1	18	84	10	67	33	18	1	46	1.60
42796250--42796285	18	2.0	18	94	0	63	30	22	0	47	1.52
42808374--42808455	25	3.3	25	87	0	119	30	23	15	30	1.96
42816811--42817377	49	11.4	49	91	5	899	33	7	28	30	1.85
42816908--42816934	12	2.2	12	100	0	54	29	0	22	48	1.51
42816864--42816983	61	2.0	61	100	0	240	34	6	26	32	1.83
42817342--42817403	26	2.3	26	97	2	115	38	0	24	37	1.56
42817293--42817450	75	2.1	73	96	3	289	34	5	27	32	1.79
42817244--42817497	124	2.1	120	95	3	454	34	6	27	31	1.82
42817369--42817688	47	6.7	47	91	2	498	33	8	29	29	1.86
42817369--42817688	96	3.4	94	91	3	498	33	8	29	29	1.86
42817369--42817688	143	2.3	143	95	1	565	33	8	29	29	1.86
42821882--42822077	51	3.9	51	79	4	200	23	17	27	31	1.97
42822080--42822167	45	2.0	45	88	4	133	25	17	23	34	1.96
42830406--42830483	35	2.2	35	86	0	102	25	19	12	42	1.87
42830406--42830494	35	2.5	35	78	7	99	25	17	13	42	1.86
42832073--42832123	22	2.3	22	86	0	75	35	15	15	33	1.90
42833194--42833226	15	2.1	16	88	5	50	51	0	42	6	1.26
42837096--42837165	28	2.5	28	79	4	79	41	31	4	22	1.73
42837173--42837231	26	2.3	27	82	5	68	40	30	6	22	1.79
42839962--42840129	43	3.9	43	77	7	171	25	14	26	33	1.95
42840051--42840150	42	2.4	42	80	10	114	29	15	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42842531--42842590	32	1.9	32	89	3	95	45	5	16	33	1.69
42843226--42843277	22	2.4	22	83	0	68	50	19	13	17	1.78
42843267--42843441	63	2.8	64	83	11	225	41	19	17	21	1.90
42843283--42843438	32	4.9	32	82	7	192	40	19	17	21	1.92
42843485--42843546	27	2.3	26	79	15	74	32	19	25	22	1.97
42843616--42843667	24	2.2	24	89	0	77	50	25	5	19	1.69
42843622--42843718	24	4.0	24	82	0	104	47	20	7	24	1.75
42843726--42843782	27	2.1	27	93	3	98	17	19	28	35	1.94
42845945--42846153	97	2.2	97	91	0	328	45	3	15	35	1.63
42849877--42849914	17	2.4	17	86	8	53	55	2	13	28	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226