genome.fa.s24.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  120  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37264707--37264894	25	7.4	25	83	5	77	46	21	1	30	1.61
37266795--37266865	21	3.4	21	78	7	90	35	14	45	5	1.68
37267246--37267338	42	2.2	42	82	3	105	34	18	23	23	1.96
37267260--37267426	43	3.9	43	84	4	203	29	17	26	25	1.98
37268791--37268868	37	2.1	37	80	4	86	47	2	6	43	1.42
37268984--37269040	5	12.0	5	76	14	50	59	3	1	35	1.25
37269333--37269377	21	2.1	21	84	8	56	37	2	2	57	1.23
37269586--37269616	16	1.9	16	93	0	53	29	25	12	32	1.93
37276965--37277062	48	2.0	48	94	0	169	42	18	5	33	1.72
37277646--37277786	5	28.2	5	97	2	266	40	19	0	39	1.52
37284355--37284428	37	2.0	37	100	0	148	29	10	18	40	1.85
37291918--37291974	17	3.5	17	68	20	50	57	1	3	36	1.26
37296936--37297031	20	4.8	20	71	12	81	14	31	22	31	1.94
37296936--37297031	40	2.4	40	89	3	149	14	31	22	31	1.94
37297934--37298047	54	2.1	53	91	1	183	20	17	33	28	1.95
37306702--37306747	14	3.4	14	76	11	51	73	0	26	0	0.83
37309433--37309472	21	2.0	20	85	9	55	32	0	5	62	1.17
37311165--37311198	16	2.1	16	100	0	68	17	17	23	41	1.90
37315798--37316927	44	25.4	44	75	5	831	30	14	23	32	1.94
37315755--37316927	89	13.2	89	79	4	902	30	14	23	31	1.94
37315755--37316908	133	8.7	133	85	3	1024	29	14	23	32	1.94
37321247--37321293	19	2.5	19	75	24	55	36	10	0	53	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37322215--37322269	19	2.8	19	75	5	56	61	1	0	36	1.06
37334561--37334656	25	3.8	24	80	6	93	33	22	28	15	1.95
37334610--37334690	26	3.2	25	83	10	78	37	22	22	18	1.95
37340611--37340640	15	2.0	15	93	0	51	30	6	13	50	1.67
37343484--37343583	49	2.0	49	98	0	191	32	21	18	29	1.96
37354729--37354757	12	2.3	13	94	5	51	65	6	6	20	1.40
37362566--37362621	29	1.9	29	88	0	85	46	12	12	28	1.78
37363631--37363678	22	2.1	24	84	7	64	64	0	4	31	1.12
37387151--37387227	14	5.6	14	67	6	59	32	18	1	48	1.56
37387148--37387229	27	3.0	27	87	0	119	32	20	1	45	1.59
37387148--37387250	13	7.7	13	71	8	64	33	20	1	44	1.63
37387152--37387240	27	3.3	26	82	3	97	33	17	2	46	1.61
37391428--37391551	43	2.9	43	81	11	155	30	29	19	20	1.97
37392050--37392075	11	2.4	11	100	0	52	0	15	0	84	0.62
37392124--37392180	28	2.0	28	90	6	89	38	5	0	56	1.22
37398568--37398719	76	2.0	76	98	0	295	37	25	9	27	1.87
37399262--37399387	43	2.9	43	78	12	141	30	28	18	22	1.97
37400262--37400318	28	2.0	28	90	6	89	38	5	0	56	1.22
37407624--37407648	13	1.9	13	100	0	50	32	16	16	36	1.90
37409081--37409490	47	8.6	47	91	2	631	32	8	30	29	1.86
37409081--37409490	96	4.3	95	90	3	635	32	8	30	29	1.86
37409081--37409490	192	2.2	192	93	1	702	32	8	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37411716--37411916	40	5.1	40	81	3	190	25	20	26	26	1.99
37411716--37411916	80	2.5	80	81	0	215	25	20	26	26	1.99
37413878--37413902	13	1.9	13	100	0	50	32	16	16	36	1.90
37415334--37415792	47	9.6	47	91	1	693	32	8	29	29	1.86
37415334--37415792	192	2.4	192	95	0	814	32	8	29	29	1.86
37417723--37417777	22	2.4	25	82	11	64	32	0	9	58	1.30
37418094--37418128	19	1.9	19	88	11	56	45	0	5	48	1.26
37429398--37429543	44	3.3	44	87	0	184	32	21	22	23	1.98
37429217--37429764	263	2.1	262	88	1	810	32	19	21	27	1.97
37429465--37430196	219	3.3	219	83	2	950	33	19	19	27	1.96
37429217--37430527	482	2.7	481	79	5	1243	32	19	20	27	1.97
37430122--37430239	44	2.7	43	84	2	137	33	21	19	26	1.97
37429946--37430453	263	1.9	263	92	0	847	31	19	21	27	1.97
37429245--37430516	701	1.8	701	90	0	2051	32	18	20	27	1.97
37431926--37432196	40	6.8	40	91	2	427	22	28	21	26	1.99
37431926--37432204	121	2.3	121	91	2	454	23	28	21	27	1.99
37440370--37440599	40	5.8	40	94	0	388	23	29	21	26	1.99
37443181--37443301	45	2.8	42	78	14	122	23	22	21	33	1.98
37443578--37444127	211	2.6	206	78	13	539	28	20	19	32	1.97
37444062--37444163	44	2.3	43	88	6	152	23	23	21	31	1.98
37446938--37447025	43	2.0	44	86	2	124	35	22	18	23	1.96
37446953--37447052	42	2.3	43	88	5	141	31	21	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37446988--37447602	213	2.8	212	84	7	742	32	18	20	28	1.97
37447417--37447777	173	2.1	172	85	6	473	30	18	21	30	1.97
37447588--37447699	43	2.6	44	79	9	115	31	18	19	30	1.96
37447502--37447776	86	3.2	86	69	15	217	29	18	20	31	1.97
37447497--37447834	173	1.9	173	82	8	420	30	18	21	29	1.97
37447820--37447941	44	2.8	44	80	9	128	31	22	22	22	1.98
37448317--37448409	43	2.2	42	86	5	125	34	22	17	25	1.96
37448333--37448424	43	2.1	43	86	4	132	32	21	18	27	1.97
37448360--37448980	218	2.9	213	83	9	758	32	18	19	29	1.96
37448796--37449152	171	2.1	171	87	3	506	30	19	21	29	1.97
37449194--37449342	44	3.4	43	81	6	176	32	20	21	25	1.97
37449711--37449810	43	2.3	43	84	5	132	32	22	22	24	1.98
37449739--37450356	217	2.9	214	88	3	904	32	19	19	28	1.96
37449716--37450407	217	3.2	215	85	3	869	32	19	19	28	1.97
37450171--37450532	173	2.1	174	90	2	559	30	19	20	29	1.97
37450579--37450719	43	3.2	44	80	4	169	30	21	21	26	1.98
37451072--37451186	43	2.7	43	89	2	160	33	20	20	26	1.97
37451119--37451729	214	2.8	214	85	5	826	32	18	19	29	1.96
37451631--37451898	85	3.1	85	67	16	210	30	17	20	30	1.96
37451073--37451793	214	3.4	218	81	7	823	32	18	20	28	1.96
37451546--37451964	171	2.4	170	83	8	503	31	18	21	28	1.97
37451911--37452005	42	2.2	42	84	3	118	30	22	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37451945--37452068	42	2.8	44	81	7	146	32	20	23	23	1.98
37452047--37452516	216	2.2	214	78	8	495	34	17	19	28	1.95
37452449--37452544	44	2.2	44	88	0	138	35	21	16	26	1.95
37452464--37452566	44	2.3	44	91	0	161	32	20	22	25	1.98
37452493--37453109	217	2.9	214	86	4	841	32	19	19	28	1.96
37452924--37453289	175	2.1	175	90	0	570	30	19	20	29	1.97
37452924--37453346	175	2.4	174	86	2	526	30	19	21	28	1.97
37453103--37454184	263	4.1	264	73	10	926	33	19	19	28	1.96
37453103--37453691	307	1.9	307	83	3	765	33	19	19	27	1.96
37453420--37453910	219	2.2	218	82	4	592	35	17	19	27	1.95
37453366--37454392	482	2.1	482	86	2	1420	33	18	19	28	1.95
37446614--37462911	701	23.4	698	77	7	16280	32	18	20	28	1.96
37453099--37454078	526	1.9	524	82	5	1226	33	19	19	27	1.96
37454378--37454657	85	3.2	85	69	10	269	31	18	21	29	1.96
37453844--37454573	219	3.3	220	84	2	898	32	19	19	28	1.96
37454326--37454663	175	1.9	175	92	0	559	31	19	20	28	1.97
37454326--37454748	175	2.4	174	85	3	494	31	19	20	28	1.97
37454505--37455572	263	4.1	263	73	9	943	32	19	19	28	1.96
37453858--37455093	307	4.0	307	71	11	792	33	19	19	28	1.96
37454813--37455312	219	2.3	219	81	3	567	34	17	19	28	1.95
37454763--37455794	482	2.1	481	87	2	1471	33	19	19	27	1.96
37455289--37455915	219	2.9	218	89	1	950	32	19	18	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37455728--37456092	175	2.1	175	89	0	552	30	19	20	29	1.97
37456223--37456712	219	2.2	217	81	5	574	34	17	20	27	1.95
37455907--37456986	263	4.1	263	73	8	962	32	18	20	28	1.96
37456689--37457315	219	2.9	218	90	0	993	32	19	19	28	1.96
37456180--37457194	482	2.1	481	88	1	1498	33	18	20	27	1.96
37457180--37457459	85	3.2	85	70	11	262	32	17	20	30	1.95
37457128--37457493	175	2.1	175	89	1	554	31	19	20	29	1.97
37456665--37457375	219	3.3	219	87	1	971	32	19	20	27	1.97
37456180--37457329	482	2.4	480	83	5	1279	33	18	20	28	1.96
37457128--37457555	175	2.4	174	86	3	547	31	18	20	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226