genome.fa.s24.2.7.7.80.10.50.1000.223.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  223  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66913251--66913280	16	1.9	16	93	6	53	30	26	0	43	1.55
66913446--66913475	16	1.9	16	93	6	53	30	26	0	43	1.55
66913187--66913975	195	4.0	195	100	0	1578	23	24	6	45	1.75
66913641--66913670	16	1.9	16	93	6	53	30	26	0	43	1.55
66913836--66913865	16	1.9	16	93	6	53	30	26	0	43	1.55
66917139--66917176	18	2.1	19	90	5	60	21	21	5	52	1.66
66923600--66923657	29	2.0	28	83	3	71	29	12	6	51	1.65
66928298--66928494	98	2.0	98	96	0	367	36	24	10	28	1.89
66929015--66929070	21	2.6	21	74	2	58	57	0	10	32	1.33
66930545--66930841	132	2.2	132	95	1	542	30	22	18	28	1.97
66930696--66930996	155	1.9	155	96	0	557	32	21	18	27	1.97
66930564--66931096	287	1.9	287	95	0	958	30	22	18	28	1.97
66932442--66932474	5	6.8	5	96	3	59	0	0	15	84	0.61
66935932--66936128	98	2.0	98	96	0	367	36	24	10	28	1.89
66936648--66936703	21	2.6	21	74	2	58	57	0	10	32	1.33
66944130--66944191	24	2.4	27	86	7	85	17	12	3	66	1.38
66944152--66944205	24	2.3	23	81	12	65	24	12	0	62	1.30
66948898--66949093	44	4.6	44	72	15	185	29	21	22	26	1.99
66948892--66949171	44	6.6	41	70	12	167	27	22	22	27	1.99
66948892--66949180	127	2.3	127	98	0	560	28	22	22	26	1.99
66950659--66950697	18	2.2	17	86	4	51	35	7	0	56	1.28
66952736--66952835	4	25.0	4	97	0	191	26	0	24	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66953489--66953601	44	2.6	44	80	5	122	32	20	16	30	1.95
66953668--66953788	44	2.8	44	80	2	127	30	19	18	32	1.95
66956285--66956328	22	2.0	22	81	0	52	36	0	2	61	1.09
66957294--66957331	18	2.1	19	90	5	60	52	5	21	21	1.66
66962481--66962518	18	2.1	19	90	5	60	21	21	5	52	1.66
66968352--66968418	29	2.4	28	73	12	64	23	5	7	62	1.44
66977427--66977473	16	3.0	17	79	17	57	48	0	0	51	1.00
67014481--67014796	114	2.9	113	75	12	320	35	17	18	28	1.93
67016628--67016663	3	12.0	3	100	0	72	66	0	0	33	0.92
67016833--67016876	23	2.0	22	90	4	70	54	2	9	34	1.44
67017581--67017638	22	2.6	22	81	7	64	41	17	5	36	1.72
67018339--67018624	88	3.2	88	68	12	253	25	23	20	30	1.99
67018427--67018539	44	2.6	44	79	0	118	29	23	17	30	1.97
67018330--67018697	176	2.1	176	91	1	594	26	24	18	30	1.98
67018401--67018684	88	3.2	88	67	9	236	26	24	18	30	1.98
67018638--67019423	44	18.8	44	75	14	560	29	25	17	26	1.98
67018686--67018828	34	3.9	34	77	16	160	30	25	20	23	1.99
67018642--67019377	78	8.9	78	74	13	520	29	25	17	26	1.98
67018720--67019423	166	4.2	166	75	8	720	29	25	18	26	1.98
67018930--67018994	34	1.9	34	96	0	121	29	23	23	24	1.99
67019272--67019336	34	1.9	34	96	0	121	27	24	24	23	2.00
67021624--67021689	25	2.6	25	83	9	71	56	6	18	19	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67022997--67023042	2	24.0	2	82	8	60	0	54	0	45	0.99
67023943--67023994	21	2.5	21	87	6	70	21	9	1	67	1.29
67028075--67028110	3	12.0	3	100	0	72	66	0	0	33	0.92
67028280--67028332	27	1.9	27	88	3	79	50	1	9	37	1.46
67029045--67029102	22	2.6	22	81	7	64	41	17	5	36	1.72
67029714--67029764	13	3.9	13	78	0	66	35	25	7	31	1.85
67040890--67040964	32	2.3	32	80	14	84	40	0	2	57	1.13
67041954--67042010	23	2.5	23	88	0	87	28	14	14	43	1.83
67042154--67042204	19	2.7	19	82	11	61	56	5	0	37	1.23
67042164--67042219	26	2.1	26	86	3	76	53	5	0	41	1.24
67045686--67045712	13	2.1	13	100	0	54	25	0	0	74	0.83
67046267--67046326	31	1.9	31	83	6	77	28	16	11	43	1.83
67048100--67048132	16	2.0	17	88	5	50	75	12	0	12	1.04
67050653--67050851	67	3.0	67	96	0	362	21	19	33	26	1.97
67053113--67053146	3	11.3	3	87	0	50	29	0	2	67	1.05
67067056--67067218	21	7.8	21	71	8	125	47	14	19	19	1.83
67067056--67067231	42	4.2	42	82	1	210	45	14	19	19	1.85
67067044--67067233	84	2.3	83	82	4	247	45	15	19	19	1.85
67067984--67068023	14	2.9	14	84	0	53	32	7	17	42	1.77
67068007--67068046	20	2.0	20	90	0	62	27	10	12	50	1.72
67067992--67068058	34	1.9	35	90	3	109	31	8	13	46	1.74
67068145--67068183	20	2.0	20	94	0	69	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67068214--67068266	17	3.2	15	80	17	52	41	1	1	54	1.22
67071596--67071645	25	2.0	25	88	0	73	62	4	30	4	1.32
67071705--67071748	12	3.7	12	87	0	70	43	0	56	0	0.99
67071705--67071748	6	7.3	6	84	0	61	43	0	56	0	0.99
67071710--67071762	24	2.2	24	82	0	61	43	0	54	1	1.11
67074598--67074745	74	2.0	74	95	0	269	39	8	14	37	1.76
67075411--67075443	13	2.4	14	90	5	50	48	3	0	48	1.17
67078623--67078820	44	4.5	44	76	6	159	32	18	12	36	1.87
67080616--67080664	23	2.0	24	88	7	73	65	0	2	32	1.04
67080621--67080691	35	2.0	36	86	5	101	59	0	2	38	1.12
67085926--67086000	39	1.9	39	88	0	114	34	46	6	12	1.67
67087888--67087925	18	2.1	18	95	0	67	52	13	5	28	1.61
67094298--67094768	236	2.0	240	94	1	824	42	1	4	52	1.29
67094298--67094768	120	4.0	120	92	3	808	42	1	4	52	1.29
67094904--67094996	44	2.1	44	84	9	118	35	26	4	33	1.76
67098025--67098076	19	2.8	17	78	21	52	36	5	9	48	1.60
67100162--67100222	23	2.7	23	76	16	65	62	0	0	37	0.96
67106656--67106711	16	3.5	16	87	0	85	26	25	5	42	1.76
67107001--67107040	17	2.4	17	91	0	62	25	27	22	25	2.00
67107009--67107042	17	2.0	17	100	0	68	23	23	23	29	1.99
67110062--67110390	52	6.3	52	87	8	472	34	14	23	27	1.94
67110120--67110303	59	3.2	59	80	16	251	34	13	25	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67110083--67110401	111	3.0	107	90	5	471	35	14	23	27	1.93
67110194--67110401	98	2.1	98	94	0	362	35	13	22	27	1.93
67110245--67110438	46	4.3	45	80	16	206	37	13	21	27	1.91
67110365--67110470	37	2.9	37	92	2	180	37	16	20	24	1.93
67111713--67111775	29	2.2	28	78	13	65	49	3	11	36	1.54
67111932--67111966	17	2.1	17	94	0	61	80	0	2	17	0.84
67114321--67114726	106	3.8	106	92	1	596	28	16	20	34	1.94
67128546--67128681	68	2.0	68	100	0	272	30	16	11	41	1.84
67130412--67130721	161	1.9	161	80	8	353	39	20	12	27	1.89
67135148--67135206	31	2.0	30	83	6	75	33	8	13	44	1.74
67135401--67135472	29	2.3	30	81	9	74	50	13	4	31	1.61
67135847--67135889	19	2.3	19	80	8	52	62	9	6	20	1.48
67151067--67151097	13	2.4	13	94	0	53	19	45	25	9	1.81
67155854--67155909	29	1.9	29	96	0	103	35	0	7	57	1.26
67156682--67156729	24	2.0	24	100	0	96	16	45	20	16	1.85
67166973--67167027	21	2.6	21	85	0	74	29	9	32	29	1.88
67167179--67167253	22	3.3	22	69	20	55	49	4	0	46	1.20
67173921--67174028	44	2.5	44	86	3	137	15	29	21	33	1.94
67192526--67192579	4	13.5	4	100	0	108	50	25	0	24	1.50
67198626--67198658	16	2.2	16	89	10	52	51	0	18	30	1.46
67199362--67199393	3	10.7	3	100	0	64	31	0	0	68	0.90
67203344--67203390	23	2.0	23	100	0	94	25	34	12	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67206979--67207082	41	2.6	41	75	9	97	61	7	11	19	1.53
67206976--67207107	20	6.4	22	73	12	68	61	7	12	18	1.54
67208541--67208598	30	1.9	30	82	6	73	48	1	8	41	1.44
67214458--67214560	3	34.0	3	86	1	80	33	9	1	55	1.44
67218860--67218905	18	2.8	18	78	15	55	32	41	26	0	1.56
67221935--67221971	15	2.4	16	90	9	67	29	13	0	56	1.37
67225902--67226181	145	1.9	145	85	2	384	24	18	13	43	1.86
67226187--67226817	315	2.0	315	99	0	1253	35	15	15	34	1.88
67235153--67235193	21	2.0	21	90	0	64	19	29	21	29	1.98
67248820--67248844	12	2.1	12	100	0	50	84	0	0	16	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226