genome.fa.s24.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  122  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37759413--37759471	31	1.9	31	89	0	91	47	6	20	25	1.74
37759406--37759531	31	4.1	30	68	10	85	39	11	19	29	1.86
37761176--37761214	12	3.1	12	82	13	51	46	0	2	51	1.14
37761187--37761215	14	2.0	15	93	6	51	48	0	0	51	1.00
37761176--37761225	26	1.9	26	84	8	66	50	2	2	46	1.24
37761808--37761869	21	3.0	21	95	2	108	59	0	0	40	0.97
37773066--37773138	32	2.3	32	85	2	94	31	2	5	60	1.34
37773940--37773979	20	2.0	20	100	0	80	15	20	20	45	1.86
37773943--37773987	20	2.2	20	92	0	72	17	17	15	48	1.81
37775757--37775785	14	2.1	14	100	0	58	44	6	20	27	1.77
37782346--37782486	40	3.5	40	85	1	158	36	16	29	18	1.93
37785880--37786296	26	16.0	26	81	6	445	38	17	16	27	1.91
37785880--37786296	52	8.0	52	83	4	493	38	17	16	27	1.91
37786986--37787020	18	1.9	18	88	11	54	40	17	8	34	1.80
37792237--37792268	12	2.7	12	100	0	64	75	6	0	18	1.01
37793153--37793314	50	3.1	50	82	8	157	27	20	30	22	1.98
37793225--37793353	50	2.6	50	82	2	143	25	21	29	23	1.99
37796527--37796897	26	14.3	26	84	2	460	38	21	16	24	1.93
37796527--37796897	78	4.8	78	87	2	532	38	21	16	24	1.93
37797434--37797476	18	2.3	19	88	4	61	37	23	6	32	1.82
37797878--37798031	54	2.9	54	83	3	159	24	19	22	33	1.97
37818258--37818346	38	2.3	38	81	16	96	24	11	10	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37820052--37820152	45	2.2	45	85	0	148	36	16	27	18	1.93
37820052--37820176	45	2.8	45	81	0	124	36	16	27	20	1.94
37827401--37827480	30	2.7	30	78	0	97	40	23	12	23	1.89
37836593--37836623	6	5.2	6	100	0	62	19	0	0	80	0.71
37837864--37837985	29	4.2	29	82	6	140	21	28	30	19	1.98
37839787--37839843	15	3.5	15	73	17	60	50	1	0	47	1.11
37839775--37839842	34	2.1	32	88	5	100	48	2	0	48	1.16
37842664--37842694	3	10.3	3	100	0	62	67	0	0	32	0.91
37861782--37861821	20	2.0	20	85	5	53	37	2	7	52	1.43
37864117--37864142	13	2.0	13	100	0	52	7	23	30	38	1.83
37865642--37865677	14	2.7	13	91	4	54	36	2	0	61	1.11
37865645--37865677	13	2.4	14	90	5	50	36	3	0	60	1.12
37869348--37870118	23	33.8	23	74	7	446	40	25	4	30	1.74
37869348--37870118	46	16.9	46	76	4	521	40	25	4	30	1.74
37869385--37869602	113	1.9	114	83	6	282	40	26	4	28	1.74
37872000--37872050	26	2.0	25	88	7	77	29	9	9	50	1.67
37873790--37873832	21	2.0	21	100	0	86	37	4	18	39	1.72
37873999--37874043	22	2.0	22	100	0	90	26	15	17	40	1.90
37875657--37875773	39	3.0	39	91	0	180	38	17	9	34	1.83
37875877--37875961	43	2.0	43	97	0	161	30	28	16	24	1.96
37882532--37882741	21	10.1	21	68	9	99	43	15	22	17	1.87
37882607--37882729	42	2.9	42	84	4	151	43	15	23	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37882576--37882741	42	4.0	41	79	9	142	41	15	24	18	1.89
37885887--37885960	28	2.7	27	78	14	71	33	4	27	35	1.76
37892526--37892583	19	2.9	19	84	5	71	32	0	13	53	1.40
37892669--37892954	27	11.8	26	72	21	212	32	1	13	53	1.47
37892637--37893007	48	7.7	48	81	7	443	32	0	13	53	1.46
37892495--37892953	145	3.2	144	79	10	394	32	0	12	53	1.43
37892637--37892953	97	3.3	97	88	4	484	33	0	12	52	1.46
37892861--37893001	74	1.9	74	86	5	205	31	0	16	51	1.49
37893054--37893105	27	1.9	27	92	0	86	23	38	21	17	1.93
37894676--37894731	26	2.3	23	82	14	60	0	44	0	55	0.99
37895176--37895238	3	20.3	3	74	6	54	30	1	6	61	1.30
37895182--37895242	23	2.6	23	87	7	79	31	1	8	59	1.37
37899534--37899564	15	2.0	16	93	6	55	25	25	6	41	1.79
37908446--37909579	72	15.4	72	84	7	1342	29	17	21	32	1.96
37909244--37909536	159	1.9	159	90	2	475	29	17	21	31	1.96
37909682--37909779	50	2.0	50	82	8	119	27	21	28	22	1.99
37910989--37911021	11	2.9	12	91	8	52	0	48	0	51	1.00
37911484--37911549	3	21.3	3	72	6	51	28	1	7	62	1.32
37911649--37911684	3	12.0	3	87	0	54	30	2	0	66	1.06
37917604--37917808	27	7.6	27	85	4	209	52	12	2	33	1.52
37917603--37917817	9	23.9	9	76	7	168	51	13	2	33	1.53
37917603--37917817	36	6.5	36	73	21	191	51	13	2	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37923358--37923418	12	5.3	12	72	18	58	42	19	37	0	1.52
37923343--37923421	33	2.4	33	89	6	117	41	17	39	1	1.58
37923825--37923917	42	2.2	43	90	1	143	26	18	23	31	1.97
37923862--37923988	67	1.9	66	82	4	157	19	19	21	39	1.93
37923922--37924070	42	3.5	42	94	0	253	20	20	22	36	1.95
37924160--37924202	21	2.0	21	86	0	59	46	27	11	13	1.78
37927823--37927901	37	2.1	37	86	4	106	26	29	18	25	1.98
37928020--37928513	47	10.5	47	93	0	763	29	29	8	32	1.86
37928075--37928509	143	3.1	143	94	0	766	30	28	7	32	1.85
37932510--37932585	22	3.3	22	64	10	62	28	10	31	28	1.90
37932505--37933089	47	12.3	47	94	2	999	32	8	29	29	1.87
37932499--37933089	96	6.2	96	94	2	1000	32	8	29	29	1.87
37932505--37933089	143	4.1	143	96	0	1039	32	8	29	29	1.87
37940841--37940874	13	2.5	13	85	4	50	38	0	0	61	0.96
37946745--37946786	22	2.0	21	86	13	59	66	4	4	23	1.30
37961764--37961882	43	2.8	43	83	5	154	27	18	29	24	1.98
37976665--37976853	95	2.0	95	91	2	308	41	25	6	26	1.79
37983229--37983288	26	2.5	24	77	17	70	6	11	5	76	1.13
37983240--37983287	12	3.8	12	77	22	53	8	8	4	79	1.06
37986810--37986848	19	2.0	20	90	5	62	30	20	30	17	1.96
37992192--37992225	17	2.0	17	100	0	68	47	5	5	41	1.52
38001181--38001237	7	8.0	7	86	9	62	70	0	8	21	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38001181--38001237	21	2.7	21	80	2	69	70	0	8	21	1.14
38001189--38001237	14	3.5	14	85	0	71	71	0	8	20	1.11
38002475--38002726	44	5.7	44	94	0	425	27	21	26	24	1.99
38002690--38003074	129	3.0	129	91	1	594	30	18	24	25	1.98
38012183--38012233	20	2.5	20	75	6	50	29	11	15	43	1.82
38014486--38014540	28	2.0	28	88	0	83	49	21	14	14	1.79
38017318--38017350	11	3.0	11	100	0	66	54	0	18	27	1.44
38023049--38023361	51	6.1	51	82	1	331	31	11	18	38	1.86
38023048--38023351	102	3.0	102	82	2	387	32	10	18	38	1.86
38023075--38023356	153	1.8	153	86	1	404	31	10	19	39	1.85
38036074--38036195	37	3.3	37	85	4	165	15	13	31	39	1.87
38037344--38037431	25	3.5	26	77	13	78	27	20	25	27	1.99
38037582--38037654	36	2.0	36	97	0	137	47	19	5	27	1.71
38039485--38039525	20	2.0	20	86	9	57	41	19	12	26	1.87
38041418--38041468	21	2.5	21	83	3	59	19	25	25	29	1.99
38051840--38051887	23	2.3	20	75	21	53	29	16	8	45	1.76
38051846--38051890	23	2.0	23	95	0	81	28	13	8	48	1.72
38054353--38054543	50	3.7	50	83	4	220	25	21	28	23	1.99
38054794--38054832	12	3.2	12	85	0	51	51	5	23	20	1.67
38058097--38058171	23	3.3	23	90	0	114	32	25	20	22	1.98
38059993--38060032	16	2.6	16	88	4	55	15	0	30	55	1.41
38060083--38060209	33	3.8	34	79	9	145	34	0	13	51	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38060214--38060263	7	7.1	7	90	0	73	20	0	38	42	1.52
38060214--38060263	21	2.4	21	96	0	91	20	0	38	42	1.52
38060298--38060692	126	3.1	125	86	2	533	36	16	17	28	1.92
38065798--38065849	25	2.1	24	86	10	70	69	0	1	28	0.99
38066438--38066575	50	2.8	50	84	4	172	35	15	12	36	1.85
38066442--38066614	50	3.4	50	79	8	156	33	15	13	36	1.87
38075261--38075327	30	2.2	31	94	5	127	16	17	8	56	1.65
38080874--38081101	126	1.8	126	94	0	402	42	5	16	35	1.70
38080998--38081202	101	2.0	101	94	0	356	43	4	16	35	1.70
38082463--38082503	18	2.2	19	86	4	57	7	19	41	31	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226