genome.fa.s24.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  145  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45338861--45339100	75	3.3	75	81	6	253	36	22	19	20	1.95
45347200--45347297	48	2.0	48	98	0	187	52	13	17	17	1.75
45349927--45349996	32	2.2	32	97	2	133	45	25	14	14	1.82
45364545--45365066	182	2.9	180	94	1	891	33	14	16	35	1.89
45372034--45372137	50	2.1	50	94	1	183	41	2	15	40	1.62
45380904--45380961	18	3.2	19	70	22	52	37	0	10	51	1.36
45381260--45381293	16	2.0	18	88	11	54	8	5	8	76	1.15
45383026--45383208	51	3.6	50	79	6	190	25	17	26	30	1.97
45383214--45383309	45	2.1	45	90	0	156	28	18	22	30	1.98
45391594--45392199	303	2.0	303	98	0	1176	36	18	17	27	1.94
45395926--45396052	59	2.1	60	83	1	157	40	3	12	43	1.61
45399320--45399346	14	1.9	14	100	0	54	37	7	3	51	1.48
45401594--45401690	28	3.1	34	61	32	81	30	10	13	45	1.77
45401607--45401702	33	3.2	33	65	27	93	32	9	14	43	1.77
45401860--45401888	14	2.1	14	100	0	58	20	0	20	58	1.39
45406848--45406901	22	2.3	24	84	15	69	35	3	5	55	1.41
45409170--45409221	23	2.3	23	93	0	86	30	17	17	34	1.93
45412626--45412688	29	2.1	32	85	8	87	55	0	0	44	0.99
45423413--45423479	32	2.1	32	86	2	91	50	8	23	16	1.73
45428763--45428816	23	2.5	22	87	6	74	59	7	1	31	1.36
45428766--45428835	3	23.3	3	74	11	63	61	5	1	31	1.28
45429887--45429935	18	2.9	17	93	6	82	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45429887--45429935	16	2.9	16	90	6	71	36	0	0	63	0.95
45430411--45431078	44	14.7	45	70	16	137	27	22	18	31	1.97
45430461--45430577	46	2.5	46	100	0	234	27	17	22	33	1.96
45430651--45430761	42	2.6	42	83	8	118	29	22	19	27	1.98
45430549--45431206	315	2.1	313	97	2	1246	27	22	18	31	1.97
45430806--45431003	98	2.0	98	92	3	328	27	21	17	33	1.96
45430912--45431072	88	1.8	88	82	5	209	29	23	16	30	1.96
45431044--45431249	44	4.7	45	73	11	167	27	21	20	30	1.98
45431000--45431253	129	2.0	130	85	5	354	26	22	20	30	1.98
45444021--45444074	23	2.5	22	87	6	74	59	7	1	31	1.36
45444024--45444093	3	23.3	3	74	11	63	61	5	1	31	1.28
45445073--45445097	8	3.1	8	100	0	50	24	12	52	12	1.72
45445149--45445197	18	2.9	17	93	6	82	36	0	0	63	0.95
45445149--45445197	16	2.9	16	90	6	71	36	0	0	63	0.95
45448420--45448462	21	2.0	21	86	8	61	34	0	6	58	1.25
45448478--45448560	10	8.8	10	70	17	54	42	0	0	57	0.98
45448508--45448716	98	2.2	98	94	2	370	41	1	4	52	1.32
45448595--45448647	26	2.0	27	89	10	83	41	0	1	56	1.10
45448700--45448732	16	2.0	17	94	5	59	45	0	0	54	0.99
45448508--45448746	98	2.5	96	90	6	333	41	1	3	52	1.29
45448602--45448834	115	2.0	117	91	4	382	42	1	4	51	1.31
45448508--45448956	102	4.4	102	85	10	605	42	1	4	51	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45449096--45449188	44	2.1	44	88	9	136	35	26	4	33	1.76
45449177--45449209	16	2.1	16	100	0	66	24	33	6	36	1.80
45454700--45454744	9	5.3	9	84	10	60	55	31	0	13	1.38
45454700--45454754	8	6.8	8	83	6	58	54	32	0	12	1.38
45455051--45455113	28	2.2	29	85	5	92	23	0	17	58	1.38
45456736--45456800	29	2.3	28	84	5	85	47	18	7	26	1.75
45457127--45457168	21	2.0	21	90	9	68	33	7	11	47	1.68
45471578--45471850	41	6.7	41	86	0	359	34	16	28	19	1.94
45471582--45471807	20	11.0	21	64	13	76	33	16	30	20	1.94
45471587--45471848	123	2.1	123	90	0	416	34	16	28	20	1.94
45486725--45486757	4	8.5	4	86	6	50	48	0	30	21	1.50
45486727--45486763	12	3.2	12	85	7	51	43	0	32	24	1.55
45486725--45486773	23	2.1	23	85	7	64	42	0	34	22	1.54
45486732--45486777	8	6.0	8	85	7	51	39	0	36	23	1.55
45490590--45490830	126	1.9	126	93	2	414	51	4	3	39	1.41
45500297--45500618	168	1.9	168	100	0	644	37	18	9	35	1.82
45501613--45501662	23	2.3	22	86	10	75	24	26	0	50	1.50
45501613--45501662	11	4.5	11	90	7	75	24	26	0	50	1.50
45507180--45507593	126	3.3	125	93	1	677	26	22	18	32	1.97
45507628--45507909	97	2.9	95	81	8	329	42	17	3	36	1.66
45508174--45508201	14	2.0	14	100	0	56	14	28	42	14	1.84
45510747--45510804	18	3.2	18	80	9	64	27	20	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45510921--45510968	24	2.0	24	88	8	71	27	12	8	52	1.67
45515377--45515423	24	2.0	24	87	8	69	38	4	8	48	1.53
45538212--45538274	24	2.6	23	75	9	63	49	0	0	50	1.00
45538255--45538296	13	2.9	14	80	13	50	54	0	0	45	0.99
45538259--45538295	16	2.3	16	86	13	58	59	0	0	40	0.97
45541023--45541069	10	4.8	10	92	2	60	74	0	12	12	1.07
45541032--45541071	10	4.0	10	96	0	71	77	0	10	12	0.99
45541485--45541530	10	4.8	10	84	7	51	71	2	13	13	1.23
45541485--45541528	19	2.3	20	80	11	56	72	2	13	11	1.21
45541494--45541530	19	1.9	19	94	0	65	72	2	10	13	1.21
45541494--45541532	10	4.0	10	83	6	53	74	2	10	12	1.17
45563798--45563945	54	2.6	54	80	10	154	25	16	13	44	1.84
45566750--45566811	23	2.6	25	82	10	83	37	30	4	27	1.78
45571867--45572006	71	2.0	72	82	12	173	47	17	17	16	1.82
45572003--45572085	27	3.1	27	85	0	112	39	21	24	14	1.91
45572882--45572939	30	1.9	30	82	6	73	53	3	10	32	1.52
45573305--45573411	54	2.0	54	90	0	169	48	12	13	26	1.77
45573305--45573459	54	2.8	53	81	9	150	47	13	14	25	1.80
45574695--45574738	19	2.4	19	81	14	56	77	6	4	11	1.11
45574695--45574741	18	2.5	19	86	10	62	74	6	6	12	1.20
45578775--45578832	30	1.9	30	89	0	89	41	3	24	31	1.71
45579044--45579075	13	2.5	13	94	0	55	31	0	12	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45579170--45579411	50	4.7	50	86	4	297	26	24	29	19	1.99
45579170--45579419	100	2.4	103	88	6	364	26	24	29	20	1.99
45582379--45582518	71	2.0	72	81	7	169	52	17	13	16	1.75
45595825--45595897	20	3.5	20	68	18	60	24	4	2	68	1.20
45596580--45596658	31	2.7	30	79	14	92	31	1	6	60	1.29
45596617--45596652	10	3.6	10	92	0	63	27	0	8	63	1.23
45596670--45596733	20	3.4	19	85	6	85	42	0	3	54	1.16
45597450--45597514	10	6.3	10	74	13	60	61	3	1	33	1.21
45597426--45597516	21	4.4	21	81	10	82	59	2	1	37	1.17
45597481--45597593	29	3.8	30	69	21	94	62	5	2	29	1.30
45597477--45597593	59	2.0	59	81	6	139	62	5	2	29	1.30
45597857--45597932	28	2.8	26	76	11	80	35	0	1	63	1.03
45597880--45597953	28	2.6	27	85	10	87	36	1	0	62	1.04
45604721--45604775	4	13.8	4	96	0	101	27	0	21	50	1.49
45610650--45610690	21	1.9	22	85	5	57	39	7	26	26	1.82
45630065--45630152	25	3.6	25	69	15	67	36	19	23	20	1.95
45630057--45630162	50	2.1	49	81	5	115	36	20	25	16	1.94
45630145--45630212	24	2.8	24	80	12	86	39	17	25	17	1.91
45632246--45632351	54	2.0	54	92	3	178	28	17	14	39	1.89
45634449--45634508	25	2.4	25	80	0	75	28	15	28	28	1.96
45641484--45641593	54	2.0	54	94	3	195	27	18	13	40	1.88
45671931--45671990	26	2.3	26	88	0	84	26	31	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45671949--45671999	26	2.0	26	92	0	84	27	31	15	25	1.96
45672981--45673023	17	2.5	17	96	0	77	30	39	20	9	1.84
45676437--45676939	144	3.6	143	83	5	562	27	22	17	32	1.96
45687741--45687815	5	15.0	5	82	13	84	44	1	1	53	1.17
45687845--45687889	16	2.5	18	86	13	58	73	2	20	4	1.11
45688746--45688854	22	4.6	24	80	6	100	15	22	19	42	1.89
45688757--45688848	44	2.0	44	83	10	114	14	22	20	42	1.88
45696910--45696961	18	2.9	18	83	11	63	71	1	5	21	1.17
45696917--45696957	17	2.5	16	92	4	64	70	2	7	19	1.22
45696910--45696958	17	2.8	17	79	17	55	71	2	6	20	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226