genome.fa.s24.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  144  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45061152--45061206	25	2.2	26	78	12	62	49	1	0	49	1.11
45061191--45061225	18	2.0	17	88	5	52	54	0	0	45	0.99
45061262--45061296	16	2.2	16	94	0	61	31	0	8	60	1.27
45061242--45061320	24	3.5	24	73	16	62	36	0	8	54	1.32
45061431--45061472	15	2.7	16	82	14	52	52	2	0	45	1.13
45061440--45061481	15	2.9	15	82	10	52	52	0	0	47	1.00
45061429--45061726	120	2.5	121	93	4	505	49	4	2	42	1.37
45061550--45061601	15	3.6	15	80	12	56	53	1	0	44	1.11
45061767--45061814	26	1.9	25	84	16	64	52	2	0	45	1.12
45061722--45061950	92	2.5	92	82	8	227	47	3	3	44	1.40
45073009--45073515	254	2.0	253	92	1	856	30	13	22	34	1.92
45078417--45078450	17	2.0	17	88	0	50	47	17	11	23	1.81
45085151--45085189	3	13.0	3	100	0	78	33	0	0	66	0.92
45087369--45087421	28	1.9	28	96	3	99	11	1	22	64	1.36
45091258--45091303	9	5.1	9	89	0	74	36	21	10	30	1.88
45091256--45091303	18	2.7	18	100	0	96	39	20	10	29	1.86
45092115--45092186	35	2.1	35	100	0	144	38	13	16	30	1.88
45094193--45094362	11	16.4	11	70	24	104	36	1	0	62	1.03
45094258--45094372	40	2.9	40	96	1	205	33	0	0	65	0.99
45094193--45094322	61	2.1	63	91	5	210	37	1	0	60	1.06
45094802--45094835	16	2.1	16	94	0	59	32	8	5	52	1.56
45098907--45099149	91	2.7	90	81	6	255	32	20	9	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45099225--45099271	19	2.4	20	82	7	60	63	2	0	34	1.06
45099278--45099327	11	4.5	12	82	14	63	64	0	2	34	1.05
45099238--45099315	21	3.8	21	77	15	83	61	0	1	37	1.04
45099257--45099330	21	3.5	22	80	12	68	64	0	2	32	1.07
45099238--45099330	41	2.3	41	77	7	100	63	0	2	34	1.07
45099310--45099344	17	2.1	17	100	0	70	65	0	5	28	1.15
45099278--45099448	11	17.1	11	67	22	60	64	1	4	29	1.21
45099226--45099452	9	23.2	9	66	20	66	63	1	3	31	1.21
45099238--45099452	10	21.8	10	66	19	71	63	0	4	31	1.20
45099278--45099447	29	5.7	29	75	13	116	64	1	4	29	1.21
45099647--45099724	9	8.6	9	72	13	61	29	1	1	67	1.06
45099846--45100098	90	2.8	90	78	9	270	35	10	17	36	1.84
45107573--45107659	42	2.1	42	100	0	174	28	18	16	36	1.92
45108201--45108243	18	2.4	18	76	0	50	60	9	9	20	1.55
45108319--45108684	183	2.0	183	95	1	662	34	18	14	32	1.91
45109012--45109083	23	3.1	23	87	0	99	27	18	18	36	1.94
45109127--45109178	17	3.2	17	70	10	54	38	26	11	23	1.89
45109120--45109217	32	3.1	31	83	5	124	39	25	12	22	1.89
45109246--45109553	24	12.8	24	78	2	190	20	11	34	33	1.88
45109271--45109474	72	2.8	72	78	5	223	20	11	35	32	1.88
45109315--45109548	72	3.2	73	78	6	210	20	11	35	33	1.88
45110724--45110779	15	3.9	14	73	13	51	35	7	0	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45116057--45116089	13	2.6	13	90	4	50	0	24	0	75	0.80
45117702--45117819	54	2.2	54	76	3	121	21	29	22	26	1.99
45121825--45121926	44	2.3	44	94	0	186	39	21	3	35	1.72
45121939--45121969	16	1.9	16	100	0	62	25	29	6	38	1.81
45125342--45125449	28	4.0	28	66	22	79	61	5	2	30	1.33
45125664--45125751	18	4.5	19	69	27	60	37	1	4	56	1.27
45125665--45125747	30	2.8	28	71	18	69	36	1	4	57	1.28
45125841--45125878	16	2.5	15	91	8	67	18	2	0	78	0.86
45132963--45132995	16	2.1	16	100	0	66	24	0	12	63	1.28
45160730--45160919	50	3.7	50	80	9	170	30	20	26	23	1.98
45166814--45166855	13	3.5	12	78	9	50	11	14	11	61	1.56
45177564--45177597	17	2.0	17	88	11	52	50	5	20	23	1.70
45180297--45180552	137	1.9	138	80	0	307	21	21	25	32	1.98
45180236--45180705	69	6.9	68	75	6	254	20	22	25	31	1.98
45180557--45180746	67	2.8	68	84	1	202	18	25	23	32	1.97
45187457--45187505	24	2.0	24	88	0	71	34	22	20	22	1.97
45200419--45200616	40	4.9	40	82	2	218	21	19	23	35	1.95
45200467--45200623	20	7.9	20	67	1	75	21	18	24	36	1.95
45200419--45200615	80	2.5	79	84	2	241	20	19	23	36	1.95
45203890--45203914	13	1.9	13	100	0	50	0	20	0	80	0.72
45204615--45204684	24	2.9	24	78	18	83	32	4	10	52	1.54
45207108--45208276	44	26.7	44	85	1	1492	30	20	27	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45208266--45208429	44	3.7	42	72	11	123	26	19	26	27	1.99
45208308--45208458	44	3.4	44	72	14	139	27	19	27	25	1.99
45208296--45208458	88	1.9	88	90	0	263	25	21	26	25	1.99
45210030--45210099	24	2.9	24	82	6	88	32	4	10	52	1.54
45211950--45211982	16	1.9	18	88	11	52	57	6	0	36	1.23
45235365--45235403	19	2.2	18	86	9	53	10	12	2	74	1.17
45235462--45235505	23	1.9	23	90	0	70	43	9	4	43	1.56
45243770--45244053	150	1.9	148	85	3	390	20	29	21	28	1.98
45243770--45244054	50	5.7	50	86	2	351	20	29	21	28	1.98
45249329--45249435	50	2.1	52	91	3	173	31	14	14	39	1.86
45252036--45252115	20	4.0	20	86	0	106	6	26	23	43	1.77
45253626--45253690	24	2.7	24	97	0	121	33	18	24	23	1.96
45255379--45255486	54	2.0	54	88	0	162	27	27	12	31	1.93
45258654--45258705	21	2.5	21	96	0	95	9	23	11	55	1.64
45258634--45258716	21	3.8	21	83	4	85	13	24	10	51	1.72
45260685--45261855	391	3.0	391	98	0	2253	33	17	16	33	1.92
45264729--45264762	14	2.3	15	90	5	52	11	20	11	55	1.67
45268369--45268711	122	2.8	123	91	1	573	30	16	20	32	1.95
45271826--45271850	10	2.5	10	100	0	50	48	0	8	44	1.32
45271878--45271961	18	4.6	18	70	11	62	51	4	7	36	1.51
45271834--45271990	56	2.8	55	79	12	194	44	5	10	38	1.63
45271991--45272263	18	16.7	18	64	21	136	26	0	26	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45272038--45272263	65	3.5	65	71	13	230	26	0	26	46	1.53
45272167--45272191	6	4.2	6	100	0	50	16	0	52	32	1.44
45272179--45272238	29	2.1	29	93	0	102	26	0	30	43	1.55
45271984--45272188	47	4.3	47	94	0	356	24	0	28	46	1.53
45272259--45272327	25	2.7	25	79	2	75	39	10	2	47	1.52
45273416--45273440	7	3.6	7	100	0	50	60	12	0	28	1.32
45274522--45274587	32	2.1	32	97	2	125	66	0	0	33	0.92
45275282--45275314	6	5.7	6	96	3	59	48	0	0	51	1.00
45276105--45276129	10	2.5	10	100	0	50	32	0	16	52	1.44
45276170--45276204	18	1.9	18	88	11	54	57	2	11	28	1.48
45278331--45278356	13	2.0	13	100	0	52	46	0	0	53	1.00
45282672--45282758	24	3.6	24	85	1	120	27	16	24	32	1.96
45282647--45282758	25	4.6	24	79	3	116	26	17	24	31	1.97
45282647--45282767	49	2.5	49	80	2	136	27	19	23	29	1.98
45282647--45282773	48	2.6	49	79	2	139	27	18	23	29	1.98
45286531--45286727	48	4.1	48	85	0	259	24	28	19	27	1.98
45293650--45293695	24	1.9	24	82	8	58	34	8	6	50	1.59
45295127--45295159	16	2.1	16	100	0	66	54	0	6	39	1.25
45295778--45295807	14	2.1	14	100	0	60	20	6	43	30	1.77
45299664--45299700	13	2.8	13	84	15	58	78	0	18	2	0.87
45300822--45300995	54	3.2	54	78	4	181	25	18	33	21	1.97
45313586--45313871	138	2.1	140	90	2	452	45	4	8	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45317806--45317891	25	3.4	25	83	0	118	25	15	22	37	1.93
45320282--45320845	126	4.5	125	89	1	794	30	16	23	29	1.96
45323950--45324072	21	5.8	21	81	1	138	26	1	25	47	1.61
45323950--45324070	43	2.8	43	83	1	154	25	1	24	47	1.61
45324359--45324405	21	2.2	21	85	7	60	6	23	34	36	1.80
45325427--45325464	20	1.9	20	84	10	51	55	7	2	34	1.43
45326348--45326447	51	2.0	51	82	7	123	45	2	25	28	1.65
45326407--45326461	11	4.9	11	77	16	60	43	1	29	25	1.65
45331405--45331446	17	2.5	17	81	14	59	42	19	0	38	1.51
45334752--45334822	34	2.1	34	97	0	133	33	30	4	30	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226