genome.fa.s24.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  219  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65459201--65459242	3	14.0	3	85	9	59	0	35	0	64	0.94
65459202--65459295	12	8.1	12	75	10	52	7	39	1	52	1.37
65465578--65465637	29	2.1	29	100	0	120	43	3	20	33	1.68
65471224--65471258	16	2.2	16	89	0	52	40	20	14	25	1.90
65471155--65471361	103	2.0	100	88	4	308	42	14	16	25	1.87
65472718--65472756	20	2.0	20	89	0	60	51	17	5	25	1.66
65475333--65475365	10	3.5	10	84	16	52	30	0	18	51	1.46
65480738--65480775	14	2.7	14	87	0	58	65	15	5	13	1.43
65480784--65480836	22	2.4	23	84	12	67	67	7	9	15	1.39
65480793--65480853	31	1.9	31	83	6	77	70	6	11	11	1.33
65480784--65480852	22	3.1	22	74	15	54	71	5	10	13	1.31
65483732--65483859	41	3.1	40	77	9	116	30	25	17	25	1.98
65484833--65484908	9	8.4	9	85	5	100	23	9	22	44	1.81
65487544--65487578	3	11.7	3	100	0	70	34	0	0	65	0.93
65492570--65492597	14	2.0	14	100	0	56	28	14	14	42	1.84
65497978--65498012	16	2.2	16	89	0	52	8	20	0	71	1.11
65500481--65500521	16	2.6	17	85	14	54	24	0	9	65	1.22
65501015--65501057	21	2.0	21	81	0	50	53	0	0	46	1.00
65508946--65508998	20	2.7	20	85	5	72	45	7	3	43	1.50
65509379--65509418	17	2.2	17	86	8	53	52	0	2	45	1.14
65529587--65529630	18	2.4	19	85	7	56	47	0	6	45	1.29
65539515--65539581	32	2.1	32	89	10	102	47	10	2	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65539673--65539711	21	1.9	19	90	10	60	41	10	2	46	1.51
65546745--65546776	12	2.6	13	90	9	50	0	6	6	87	0.67
65548020--65548062	18	2.4	19	84	7	54	48	0	6	44	1.29
65553648--65553686	18	2.2	18	90	0	60	41	41	0	17	1.50
65553836--65553910	37	2.0	37	97	0	141	33	6	16	44	1.73
65553845--65553901	17	3.2	17	67	13	51	31	3	15	49	1.62
65553909--65553948	9	4.4	9	83	0	53	30	10	17	42	1.82
65561881--65561942	24	2.7	22	80	9	79	32	3	4	59	1.34
65561881--65562002	23	5.2	23	70	9	86	32	8	3	55	1.45
65562071--65562129	24	2.4	23	77	22	59	35	1	3	59	1.24
65563419--65563448	14	2.1	14	93	0	51	46	6	6	40	1.56
65565367--65565392	6	4.3	6	100	0	52	50	0	0	50	1.00
65568533--65568572	13	3.4	12	90	10	57	20	0	0	80	0.72
65568542--65568577	13	2.7	13	86	4	54	22	0	0	77	0.76
65571763--65571796	5	6.8	5	93	0	50	76	0	5	17	0.98
65572987--65573037	20	2.5	20	87	12	70	33	0	7	58	1.27
65574765--65574812	24	2.0	24	84	8	62	77	2	4	16	1.03
65580611--65580723	44	2.6	44	81	12	135	28	21	24	25	1.99
65584346--65584500	36	4.0	36	76	15	157	28	20	13	37	1.91
65584382--65584536	46	3.6	46	76	16	195	28	21	12	37	1.90
65584303--65584536	82	2.9	82	92	1	384	28	21	13	36	1.91
65584994--65585021	13	2.2	13	100	0	56	35	42	0	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65586349--65586389	21	2.0	21	95	0	73	19	9	36	34	1.85
65590278--65590397	61	2.0	60	93	1	204	28	23	25	23	2.00
65597115--65597141	4	6.8	4	100	0	54	77	0	0	22	0.76
65605912--65605940	2	14.5	2	100	0	58	51	0	0	48	1.00
65607994--65608019	3	8.7	3	100	0	52	30	0	0	69	0.89
65611544--65612000	247	1.8	252	90	3	753	32	11	12	43	1.78
65619201--65619373	88	2.0	88	85	4	233	34	13	9	42	1.78
65621804--65621881	30	2.5	31	81	10	88	48	2	1	47	1.23
65624016--65624045	15	2.1	15	93	6	53	43	13	0	43	1.43
65631992--65632032	20	2.0	20	100	0	82	9	14	19	56	1.66
65631998--65632041	20	2.2	20	84	4	54	18	11	18	52	1.74
65634290--65634908	81	7.6	81	82	3	697	30	23	18	27	1.98
65634284--65634908	162	3.9	162	87	1	822	30	23	18	27	1.98
65634290--65634915	243	2.6	242	83	2	781	30	23	18	27	1.98
65638685--65638727	19	2.3	19	100	0	86	62	4	0	32	1.15
65639754--65639830	29	2.6	29	83	4	91	49	14	12	23	1.78
65640669--65640877	81	2.5	81	90	2	319	30	22	20	26	1.98
65640852--65640917	33	2.0	33	100	0	132	30	36	18	15	1.91
65640771--65640989	114	1.9	114	94	0	384	28	27	20	23	1.99
65640885--65641413	81	6.5	80	90	2	799	29	25	19	25	1.99
65640709--65641072	195	1.9	195	92	1	622	29	26	19	25	1.98
65640885--65641413	243	2.2	242	95	0	950	29	25	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65643963--65644224	81	3.2	81	77	6	235	32	23	14	28	1.95
65643963--65644320	161	2.3	158	78	4	393	31	24	15	29	1.96
65649229--65649267	20	2.0	20	100	0	78	46	5	20	28	1.72
65655247--65655292	14	3.4	14	84	3	58	30	2	10	56	1.46
65656643--65656837	98	2.0	98	92	0	327	36	23	9	30	1.87
65657495--65657540	24	2.0	23	87	12	67	60	4	6	28	1.40
65658125--65658182	22	2.6	22	84	7	73	43	17	3	36	1.66
65658138--65658216	21	3.8	19	80	12	77	39	16	7	36	1.77
65658172--65658215	21	2.1	21	100	0	88	38	13	9	38	1.77
65663055--65663092	14	2.7	15	84	16	62	39	0	13	47	1.42
65671723--65671766	19	2.3	19	85	14	56	61	0	9	29	1.27
65673552--65673750	67	3.0	69	82	10	227	31	17	17	34	1.93
65687149--65687191	18	2.3	19	88	11	63	62	0	9	27	1.25
65687163--65687203	15	2.6	17	82	17	54	65	0	4	29	1.13
65688545--65688819	108	2.6	107	84	4	369	26	23	22	27	2.00
65688738--65689027	99	2.9	98	83	7	354	23	19	26	30	1.98
65693171--65693237	31	2.1	32	86	2	91	43	7	1	47	1.40
65696498--65696545	18	2.6	18	83	3	51	39	16	18	25	1.91
65696684--65696713	13	2.3	13	100	0	60	40	43	0	16	1.48
65705772--65705805	15	2.2	16	94	5	61	58	11	2	26	1.47
65706374--65706460	43	2.0	43	84	2	113	34	9	5	50	1.58
65707986--65708016	16	1.9	16	93	0	53	58	35	0	6	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65712541--65712571	2	15.5	2	100	0	62	48	0	0	51	1.00
65713458--65713641	100	1.8	101	92	1	316	32	10	15	41	1.82
65713959--65714012	19	2.8	19	100	0	108	37	11	16	35	1.84
65713959--65714035	19	3.7	22	89	6	85	36	9	16	37	1.81
65714482--65714514	3	11.0	3	93	0	57	30	0	0	69	0.88
65722648--65722709	21	3.0	21	74	9	72	35	19	30	14	1.92
65722644--65722764	42	2.9	42	83	0	143	39	18	25	16	1.91
65722694--65722801	21	5.2	21	76	2	92	43	15	21	19	1.88
65724969--65725032	17	3.6	17	74	15	67	28	12	12	46	1.78
65724961--65725029	36	1.9	36	96	0	129	27	13	13	46	1.79
65724961--65725012	19	2.9	18	72	16	54	26	13	13	46	1.80
65730088--65730151	17	3.6	17	74	15	67	28	12	12	46	1.78
65730080--65730148	36	1.9	36	96	0	129	27	13	13	46	1.79
65730080--65730131	19	2.9	18	72	16	54	26	13	13	46	1.80
65730783--65730832	24	2.1	24	81	3	57	70	8	10	12	1.35
65735065--65735107	22	2.0	22	90	0	68	20	2	13	62	1.42
65741844--65741886	22	2.0	22	85	0	59	55	9	13	20	1.66
65744631--65744676	15	3.0	15	78	15	58	30	0	0	69	0.89
65745307--65745340	17	1.9	18	88	5	52	50	11	0	38	1.39
65751710--65751757	23	2.1	22	81	11	53	70	6	8	14	1.31
65755250--65755296	24	2.0	24	83	4	60	53	12	10	23	1.70
65763666--65763706	12	3.4	12	86	0	55	78	2	9	9	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65770778--65770825	20	2.4	19	80	16	53	39	0	0	60	0.97
65771519--65771547	13	2.3	13	94	5	51	27	0	37	34	1.57
65775634--65775810	90	2.0	89	84	5	232	35	20	10	33	1.87
65775837--65775884	20	2.4	20	92	0	78	29	18	16	35	1.93
65776033--65776068	10	3.7	10	85	7	56	66	0	0	33	0.92
65776114--65776173	20	3.0	21	76	16	63	60	3	11	25	1.47
65781930--65782002	36	2.0	36	94	0	128	41	26	12	20	1.87
65787608--65787632	13	1.9	13	100	0	50	88	0	4	8	0.64
65787870--65787910	16	2.7	15	85	14	57	31	2	0	65	1.05
65792177--65792204	7	4.0	7	100	0	56	14	0	0	85	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226