Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  125  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38630106--38630165
29
2.0
32
83
9
81
48
6
26
18
1.72
38632668--38632706
18
2.2
18
95
0
69
0
56
0
43
0.99
38632668--38632709
6
6.8
6
84
13
50
0
54
0
45
0.99
38632771--38632834
3
20.7
3
73
17
51
3
32
3
60
1.28
38632772--38632834
25
2.5
26
78
19
78
3
31
3
61
1.27
38633067--38633092
11
2.4
11
100
0
52
23
0
15
61
1.33
38635395--38635447
15
3.4
15
75
10
61
58
0
3
37
1.16
38635388--38635453
32
2.1
32
100
0
132
59
0
3
37
1.13
38635388--38635437
15
3.1
16
72
11
57
62
0
2
36
1.07
38635402--38635454
16
3.3
16
74
10
63
56
0
3
39
1.17
38635573--38635612
20
2.0
20
90
0
62
50
12
10
27
1.72
38635596--38635635
14
2.9
14
84
0
53
42
17
7
32
1.77
38642281--38642455
85
2.1
85
92
0
287
34
18
21
25
1.96
38642878--38642926
25
2.0
25
87
0
71
59
14
2
24
1.46
38643490--38643551
29
2.1
30
87
3
90
51
4
9
33
1.56
38644544--38644575
16
2.0
16
93
0
55
59
0
12
28
1.34
38645572--38645608
16
2.3
16
86
13
58
40
0
2
56
1.13
38645620--38645678
22
2.7
22
75
15
59
55
3
1
38
1.26
38648353--38648457
33
3.2
32
81
5
111
54
0
43
1
1.11
38648322--38648459
66
2.1
66
82
2
161
50
0
46
2
1.18
38648398--38648456
20
3.3
20
73
26
69
54
0
45
0
0.99
38648468--38648681
75
2.9
76
89
2
335
35
9
43
10
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38652038--38652107
32
2.2
32
97
0
131
28
18
12
40
1.88
38654646--38654701
21
2.8
19
80
15
69
71
3
0
25
1.02
38655534--38655587
21
2.6
21
90
0
81
22
24
18
35
1.96
38657311--38657414
41
2.5
41
84
0
145
31
18
30
19
1.95
38659689--38659751
30
2.1
30
100
0
126
23
25
19
31
1.98
38670247--38670292
24
1.9
24
90
0
74
19
13
10
56
1.66
38672293--38672385
45
2.1
45
97
0
177
26
20
21
31
1.98
38676913--38677002
12
7.5
12
72
13
51
55
4
6
33
1.46
38676959--38677001
3
14.0
3
81
13
52
62
0
2
34
1.08
38676963--38677001
14
2.8
14
96
0
69
61
0
2
35
1.10
38676959--38677001
17
2.5
17
85
10
61
62
0
2
34
1.08
38682816--38682850
18
1.9
18
94
0
61
28
34
31
5
1.81
38686900--38686930
14
2.2
14
94
0
53
77
9
0
12
0.99
38687036--38687110
19
3.8
19
89
6
123
38
10
14
36
1.81
38687337--38687381
23
2.0
23
81
0
54
22
0
15
62
1.33
38687851--38687894
23
2.0
22
90
4
70
34
6
2
56
1.38
38705707--38705737
16
2.0
15
93
6
53
38
6
12
41
1.69
38707704--38707747
21
2.1
21
86
0
61
36
25
11
27
1.90
38711099--38711127
15
1.9
15
100
0
58
27
27
13
31
1.94
38717845--38717937
39
2.5
37
80
7
98
27
29
22
20
1.98
38718291--38718338
3
16.0
3
82
0
60
58
6
0
35
1.23
38718292--38718340
18
2.7
18
93
0
80
55
8
0
36
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38718291--38718338
12
4.0
12
91
0
69
58
6
0
35
1.23
38719044--38719083
20
2.0
20
85
9
55
2
15
5
77
1.04
38719214--38719281
31
2.3
28
78
9
73
41
2
1
54
1.24
38719260--38719298
21
1.9
20
84
5
51
46
2
0
51
1.14
38724199--38724241
21
2.0
21
82
8
52
23
20
4
51
1.66
38725285--38725377
39
2.5
37
80
7
98
27
29
22
20
1.98
38725730--38725777
3
16.0
3
82
0
60
58
6
0
35
1.23
38725731--38725779
18
2.7
18
93
0
80
55
8
0
36
1.30
38725730--38725777
12
4.0
12
91
0
69
58
6
0
35
1.23
38726483--38726522
20
2.0
20
85
9
55
2
15
5
77
1.04
38726653--38726720
31
2.3
28
78
9
73
41
2
1
54
1.24
38726699--38726737
21
1.9
20
84
5
51
46
2
0
51
1.14
38733243--38733275
16
1.9
18
88
11
52
36
0
3
60
1.12
38745296--38745361
34
1.9
34
96
0
123
46
28
3
21
1.66
38755065--38755177
46
2.4
46
91
1
172
46
9
10
33
1.71
38761673--38761784
46
2.4
47
88
5
151
47
10
10
31
1.73
38768628--38768666
14
2.8
14
84
7
53
82
0
10
7
0.86
38771054--38771115
30
2.1
29
82
11
72
50
3
0
46
1.17
38771285--38771334
13
3.8
13
75
0
55
36
26
4
34
1.75
38771571--38771596
12
2.2
12
100
0
52
23
0
0
76
0.78
38771560--38771603
22
2.1
20
87
8
61
29
2
0
68
1.02
38772087--38772120
7
4.7
7
85
7
50
26
0
2
70
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38772087--38772129
23
1.9
23
90
4
70
27
0
2
69
1.00
38784395--38784461
34
2.0
34
88
5
100
25
8
28
37
1.86
38784407--38784480
34
2.2
34
82
4
87
24
12
28
35
1.91
38785409--38785471
30
2.1
31
90
3
101
12
14
20
52
1.74
38795269--38795324
20
2.8
21
81
8
62
41
0
1
57
1.09
38801957--38801994
13
2.9
13
77
14
51
34
23
7
34
1.84
38803029--38803110
10
8.4
9
71
14
56
34
3
3
58
1.33
38803043--38803118
10
7.7
10
72
7
57
35
3
2
57
1.31
38803029--38803091
19
3.3
19
71
8
56
36
4
3
55
1.37
38803013--38803129
39
2.9
39
83
5
119
36
6
2
53
1.41
38813325--38813356
5
6.4
5
100
0
64
81
0
0
18
0.70
38814793--38814884
46
2.0
46
100
0
184
41
13
15
30
1.85
38817174--38817285
57
2.0
57
82
7
138
46
7
16
30
1.73
38825866--38825914
21
2.2
24
82
10
59
10
16
0
73
1.09
38825866--38825914
24
2.0
25
84
11
66
10
16
0
73
1.09
38831851--38832034
41
4.5
41
86
6
160
29
22
19
28
1.98
38831896--38832034
41
3.4
40
93
0
224
30
20
18
30
1.97
38832147--38832277
61
2.1
61
83
2
165
40
15
8
35
1.77
38837356--38837380
12
2.1
12
100
0
50
76
0
8
16
1.02
38838578--38838848
54
5.0
54
81
0
281
26
19
31
21
1.98
38840838--38841245
203
2.0
203
100
0
816
28
12
27
30
1.93
38841415--38841469
27
2.1
26
89
3
83
25
21
23
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38841420--38841476
27
2.1
27
80
3
62
22
28
21
28
1.99
38844507--38844562
27
2.1
27
93
3
96
42
16
5
35
1.70
38847409--38847485
40
1.9
41
84
7
104
22
11
27
38
1.88
38848307--38848391
24
3.5
24
88
0
125
28
15
17
38
1.90
38856362--38856409
24
2.0
24
100
0
96
29
29
12
29
1.93
38873424--38873543
25
4.8
25
75
4
98
38
22
14
25
1.91
38873424--38873549
50
2.5
50
80
5
139
38
21
15
24
1.92
38876163--38876200
19
2.0
20
89
5
60
39
2
7
50
1.46
38876114--38876207
40
2.4
39
77
13
95
34
2
9
54
1.45
38876201--38876267
17
3.7
18
68
11
57
29
1
4
64
1.22
38876383--38876437
17
3.3
17
71
5
58
54
5
12
27
1.60
38877708--38877777
19
3.6
19
75
23
65
34
1
4
60
1.25
38877813--38877850
18
2.1
18
85
9
51
44
0
5
50
1.24
38892733--38892783
24
2.2
23
82
10
59
15
19
0
64
1.29
38898209--38898243
18
1.9
18
88
0
52
31
8
20
40
1.82
38898524--38898561
20
2.0
20
89
5
60
23
21
0
55
1.44
38903381--38903637
126
2.0
128
83
9
321
31
8
11
47
1.70
38903892--38903951
27
2.2
28
82
11
79
58
10
6
25
1.55
38905762--38905790
12
2.3
13
94
5
51
13
0
10
75
1.04
38907331--38907432
43
2.4
43
100
0
204
32
6
16
44
1.74
38907359--38907427
20
3.3
20
67
25
61
33
5
14
46
1.68
38908687--38908743
30
1.9
29
86
10
80
43
7
21
28
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38909217--38909554
102
3.3
101
85
2
419
29
15
24
30
1.95
38909217--38909545
51
6.5
50
79
5
293
29
15
24
30
1.95
38919878--38920070
51
3.8
51
75
6
169
26
16
27
29
1.97
38920289--38920361
36
2.0
36
100
0
146
36
13
19
30
1.90
38926189--38926284
31
3.1
31
93
3
165
31
8
13
46
1.73
38926729--38926914
51
3.7
51
81
3
180
25
17
27
29
1.98
38940383--38940433
3
17.0
3
100
0
102
66
0
0
33
0.92
38945488--38946000
23
22.9
22
75
11
307
26
0
24
47
1.59
38945522--38945825
44
6.9
42
79
12
174
25
0
28
44
1.61
38945488--38946009
67
7.8
65
79
10
511
27
0
24
46
1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226