genome.fa.s24.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  154  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48020345--48020555	39	5.5	38	78	9	191	36	11	12	39	1.80
48020394--48020555	38	4.3	39	82	5	199	35	11	12	40	1.79
48020382--48020555	76	2.3	76	95	1	314	37	10	12	39	1.78
48021598--48021639	22	2.0	22	90	4	68	42	0	0	57	0.99
48021598--48021647	10	4.4	11	80	14	57	42	0	0	58	0.98
48021629--48021667	19	2.1	19	85	4	53	38	0	0	61	0.96
48026745--48026827	34	2.4	34	83	0	103	26	18	21	33	1.96
48036311--48036352	16	2.6	16	77	14	50	54	0	2	42	1.13
48036425--48036506	28	3.0	27	85	8	105	47	1	1	50	1.16
48042138--48042192	29	2.0	28	86	10	78	49	14	18	18	1.80
48042833--48042863	16	1.9	16	100	0	62	58	6	0	35	1.24
48048495--48048542	3	15.7	3	79	12	53	41	0	0	58	0.98
48060886--48061421	50	10.7	50	68	1	311	30	23	25	21	1.99
48060886--48061454	100	5.7	100	92	0	888	30	23	24	21	1.99
48062892--48062942	3	16.7	3	76	11	50	43	0	0	56	0.99
48066402--48066463	14	4.2	14	81	8	61	46	8	3	41	1.49
48071438--48071462	3	8.3	3	100	0	50	32	0	0	68	0.90
48080496--48080540	22	2.0	22	100	0	90	31	15	22	31	1.95
48090843--48090944	3	33.7	3	90	2	159	70	0	29	0	0.87
48096668--48096809	72	2.0	72	94	0	248	35	17	18	28	1.94
48097140--48097168	4	7.2	4	100	0	58	75	0	0	24	0.80
48097201--48097384	82	2.2	82	81	7	214	52	2	8	37	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48097595--48097658	3	21.7	3	80	3	58	57	3	1	37	1.24
48099023--48099137	44	2.6	44	80	2	115	28	20	23	26	1.99
48099104--48099183	41	2.0	41	87	0	115	32	13	20	33	1.91
48099270--48099669	44	9.0	45	75	7	350	22	23	26	28	1.99
48099258--48099669	89	4.6	89	88	1	578	21	22	26	29	1.99
48100876--48100901	6	4.3	6	100	0	52	0	15	0	84	0.62
48102109--48102173	32	2.0	32	96	0	121	38	16	12	32	1.86
48107412--48107555	48	3.2	46	68	20	108	54	1	6	37	1.36
48107799--48107836	3	12.7	3	100	0	76	34	31	0	34	1.58
48107835--48107873	3	13.3	3	83	5	53	58	0	0	41	0.98
48114283--48114321	20	2.0	20	89	0	60	53	12	2	30	1.52
48125888--48125915	8	3.5	8	100	0	56	21	0	0	78	0.75
48127521--48127582	23	2.7	23	85	2	81	50	1	1	46	1.20
48127558--48127597	16	2.5	16	91	0	62	47	2	7	42	1.45
48127608--48127777	59	2.9	59	98	0	322	40	5	9	44	1.61
48127844--48127887	23	1.9	23	90	9	72	59	2	0	38	1.10
48127949--48128018	31	2.2	33	82	7	81	22	31	15	30	1.95
48129186--48129241	29	1.9	29	85	0	76	23	32	25	19	1.98
48130136--48130265	38	3.4	38	88	3	174	31	40	12	16	1.85
48130743--48130786	20	2.1	21	83	4	54	36	27	22	13	1.92
48135737--48136030	113	2.6	113	92	1	482	34	18	22	24	1.96
48138969--48139019	23	2.2	23	96	0	93	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48146290--48146387	23	4.3	23	89	2	153	22	20	27	29	1.98
48146293--48146381	45	2.0	45	93	0	151	22	20	28	29	1.98
48148475--48148509	15	2.2	16	90	5	54	37	0	14	48	1.44
48151669--48151701	17	1.9	17	93	0	57	36	9	6	48	1.60
48151662--48151718	30	1.9	30	85	0	78	35	7	3	54	1.45
48151684--48151827	61	2.4	61	81	4	166	39	4	7	48	1.51
48152017--48152198	12	16.2	12	64	27	55	47	17	1	34	1.57
48152049--48152094	7	6.6	7	78	16	51	60	10	0	28	1.30
48152049--48152094	15	3.3	15	82	11	62	60	10	0	28	1.30
48152124--48152878	9	84.4	9	72	10	516	47	17	2	33	1.60
48152055--48152614	18	29.3	21	67	22	112	49	16	2	32	1.58
48152731--48152885	66	2.4	65	80	8	172	44	19	0	35	1.56
48152803--48152883	16	4.9	17	77	16	66	44	18	1	35	1.58
48152849--48152885	7	5.0	7	87	12	56	54	16	0	29	1.43
48158824--48158987	43	3.8	43	81	4	188	32	20	20	26	1.97
48158811--48158987	86	2.0	87	87	5	252	30	20	21	27	1.98
48162986--48163036	22	2.3	21	80	12	57	47	5	3	43	1.46
48165159--48165203	18	2.6	17	80	13	56	8	8	17	64	1.47
48171133--48171200	34	2.0	34	82	5	84	20	25	25	29	1.99
48174741--48174816	29	2.7	27	74	13	73	34	2	1	61	1.18
48174752--48174826	39	1.9	39	86	10	109	36	4	0	60	1.16
48174748--48174818	28	2.5	30	80	13	87	33	2	0	63	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48174748--48174830	28	2.9	27	75	8	76	34	4	0	60	1.18
48179189--48179267	37	2.1	37	90	0	122	25	31	18	24	1.98
48179386--48179945	47	11.7	47	93	1	807	29	30	8	32	1.87
48179386--48179945	96	5.9	94	92	2	843	29	30	8	32	1.87
48179386--48179924	145	3.8	145	94	1	874	29	30	8	32	1.87
48190296--48190320	12	2.1	12	100	0	50	76	0	0	24	0.80
48190537--48190753	95	2.2	97	81	11	248	29	5	5	59	1.43
48191641--48191677	17	2.3	17	90	9	60	5	24	0	70	1.08
48204042--48204286	29	8.5	29	76	4	154	22	24	12	39	1.89
48204129--48204203	27	2.7	29	81	8	91	32	24	5	38	1.78
48204045--48204311	143	1.9	144	84	0	365	23	24	12	39	1.90
48209368--48209567	39	5.1	39	79	3	197	18	16	31	33	1.93
48218604--48218644	20	2.0	20	86	9	57	39	2	12	46	1.54
48228826--48228881	22	2.5	22	77	11	78	14	23	19	42	1.88
48230379--48230465	28	3.0	28	76	18	81	56	2	1	40	1.19
48230404--48230467	31	2.1	30	85	2	83	57	1	0	40	1.08
48230391--48230509	33	3.7	33	76	6	109	56	5	2	36	1.35
48231542--48231611	35	2.0	35	83	8	88	67	7	2	22	1.29
48231815--48231898	44	1.9	44	97	0	159	47	4	10	36	1.59
48231871--48231904	18	1.9	17	88	5	50	55	5	0	38	1.24
48234775--48234839	14	4.4	14	75	16	60	72	3	21	3	1.12
48242721--48242759	20	2.0	20	89	0	60	35	5	7	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48251754--48251783	12	2.5	12	88	0	51	73	0	10	16	1.09
48256818--48256860	15	2.9	15	82	0	50	25	0	30	44	1.55
48257869--48257906	17	2.2	17	86	9	51	55	2	0	42	1.14
48263159--48263227	16	4.3	16	83	7	86	49	2	14	33	1.58
48263448--48263490	21	2.0	21	86	9	59	62	2	0	34	1.08
48273136--48273165	14	2.1	14	100	0	60	30	0	56	13	1.37
48277620--48277868	50	4.8	50	85	4	284	20	29	24	26	1.99
48277619--48277868	100	2.4	104	88	6	357	20	29	24	26	1.99
48277963--48277994	13	2.5	13	94	0	55	56	12	0	31	1.37
48278205--48278261	30	1.9	30	88	0	87	31	22	3	42	1.71
48286103--48286167	7	9.3	7	83	12	53	33	0	52	13	1.41
48286131--48286167	14	2.6	14	100	0	74	29	0	56	13	1.37
48296016--48296067	11	5.3	10	78	19	56	71	1	1	25	1.07
48296014--48296056	18	2.4	18	92	7	70	69	0	0	30	0.88
48305614--48305658	20	2.2	20	85	14	58	53	13	4	28	1.59
48305871--48305909	20	1.9	21	89	5	62	41	7	17	33	1.79
48307985--48308052	22	3.0	21	76	6	64	45	17	19	17	1.86
48308044--48308246	32	6.4	32	83	2	203	37	19	21	21	1.94
48308044--48308246	64	3.2	64	87	2	257	37	19	21	21	1.94
48308364--48308445	24	3.4	24	89	0	119	50	24	6	19	1.70
48308376--48308474	24	4.1	24	85	0	117	47	23	6	23	1.73
48308491--48308719	27	8.5	27	75	3	158	22	20	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48308491--48308698	81	2.6	81	81	5	226	22	19	20	37	1.94
48308572--48308770	54	3.7	54	77	0	209	21	20	18	40	1.92
48308517--48308767	108	2.3	109	84	2	299	22	18	18	40	1.91
48308570--48308719	81	1.9	81	85	0	210	22	22	19	36	1.95
48311058--48311133	33	2.3	33	77	2	82	36	21	21	21	1.95
48311042--48311127	32	2.7	32	75	1	82	30	23	22	24	1.99
48311099--48311191	46	2.0	47	81	6	109	38	18	19	23	1.93
48311342--48311405	22	2.9	22	76	6	58	43	17	21	17	1.87
48311366--48311415	22	2.3	22	78	0	55	46	22	14	18	1.84
48311410--48311545	32	4.3	32	81	4	150	38	22	18	20	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226