genome.fa.s24.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  159  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49277451--49277781	27	12.3	27	81	1	358	43	16	17	22	1.88
49277451--49277784	54	6.2	54	84	0	398	43	17	17	22	1.88
49278650--49278707	30	1.9	31	85	3	82	32	18	8	39	1.82
49294984--49295036	26	2.0	26	100	0	106	39	22	15	22	1.91
49295033--49295407	176	2.1	178	82	5	458	42	9	14	33	1.79
49297281--49297358	22	3.4	23	76	15	72	42	20	20	16	1.89
49299012--49299074	13	4.8	13	84	0	72	33	4	23	38	1.76
49304385--49304548	43	3.9	42	78	4	145	29	26	15	28	1.96
49304911--49305045	68	2.0	68	91	0	216	43	17	11	28	1.82
49308544--49308591	24	2.0	24	100	0	96	50	20	4	25	1.66
49315329--49315497	27	6.2	27	85	7	182	23	16	19	40	1.91
49316673--49316726	25	2.2	25	86	0	72	18	46	11	24	1.81
49321624--49321663	19	2.0	19	85	9	53	42	22	2	32	1.67
49322471--49322535	27	2.4	27	80	9	71	35	20	24	20	1.96
49322643--49322881	27	8.8	27	77	10	193	25	17	18	38	1.93
49322657--49322881	54	4.1	54	84	0	252	24	16	19	38	1.92
49324043--49324096	25	2.2	25	86	0	72	18	46	11	24	1.81
49328684--49328736	3	17.7	3	92	0	61	33	7	0	58	1.26
49328814--49328853	17	2.4	17	82	0	53	20	2	2	75	1.04
49331592--49331632	14	2.9	14	85	3	55	85	4	2	7	0.81
49332028--49332070	5	8.8	5	80	14	54	83	0	16	0	0.64
49332024--49332071	20	2.3	20	86	13	71	83	0	16	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49332028--49332071	16	2.6	16	89	7	61	84	0	15	0	0.63
49332959--49333850	44	19.5	44	71	11	224	31	18	20	29	1.97
49332918--49333119	92	2.2	91	90	2	323	26	17	25	30	1.98
49332918--49333177	92	2.9	92	84	5	300	28	18	24	28	1.98
49333465--49333810	93	3.8	91	75	13	257	32	17	20	29	1.96
49333465--49333821	137	2.6	135	82	5	421	32	17	20	29	1.96
49333782--49333895	44	2.6	44	81	2	113	30	21	20	27	1.98
49334215--49334379	45	3.7	45	76	9	176	33	18	20	26	1.96
49334214--49334379	89	1.9	89	89	5	264	33	19	20	26	1.96
49334573--49334616	23	2.0	23	90	4	72	63	20	0	15	1.31
49335863--49335903	3	13.7	3	89	0	55	31	7	0	60	1.24
49338929--49338961	18	1.9	17	88	11	50	42	18	15	24	1.88
49341845--49341942	28	3.6	26	81	9	115	31	16	25	26	1.96
49347826--49347914	10	9.3	10	68	24	50	38	1	2	58	1.18
49347833--49347883	19	2.7	19	78	9	59	41	1	1	54	1.22
49347828--49347901	29	2.6	28	83	10	87	37	1	1	59	1.14
49347855--49347897	19	2.3	19	84	8	52	41	0	0	58	0.98
49347828--49347912	29	3.0	27	79	8	80	38	1	2	57	1.19
49356738--49357227	47	10.4	47	96	0	809	32	8	29	28	1.87
49357346--49357424	37	2.1	37	86	4	106	26	18	29	25	1.98
49363721--49363755	15	2.3	15	90	5	52	34	2	5	57	1.37
49364067--49364110	20	2.1	21	91	4	72	43	6	6	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49372042--49372066	8	3.1	8	100	0	50	40	0	0	60	0.97
49373333--49373384	24	2.2	24	82	0	59	7	19	44	28	1.78
49381606--49381643	20	2.0	20	89	5	60	55	10	7	26	1.61
49383842--49383911	35	2.0	35	100	0	140	54	22	2	20	1.58
49395429--49395839	39	10.5	39	80	3	459	30	17	31	20	1.96
49401539--49401747	40	5.3	40	92	1	305	24	21	27	26	1.99
49401486--49401747	40	6.6	40	87	3	298	24	20	27	26	1.99
49401486--49401747	119	2.2	120	82	4	316	24	20	27	26	1.99
49401539--49401782	79	3.1	80	85	2	244	25	20	27	25	1.99
49401487--49401782	119	2.5	119	80	4	296	25	20	27	25	1.99
49409441--49409648	40	5.3	40	90	2	296	24	21	27	26	1.99
49409388--49409648	40	6.6	39	86	4	292	24	21	27	26	1.99
49409441--49409683	78	3.1	78	82	5	242	25	20	27	25	1.99
49445016--49445193	27	6.6	27	83	6	198	30	28	15	26	1.96
49446502--49446526	13	1.9	13	100	0	50	8	16	0	76	1.02
49453007--49453184	27	6.6	27	84	3	205	29	28	15	26	1.96
49453028--49453183	82	1.9	81	88	3	233	29	28	15	26	1.96
49455680--49455769	40	2.3	40	90	1	146	24	25	24	25	2.00
49457598--49458276	339	2.0	335	85	6	851	41	10	11	35	1.77
49461607--49461724	28	4.2	28	90	1	157	28	20	24	26	1.99
49461574--49461730	28	5.4	28	82	9	154	28	21	24	24	1.99
49462061--49462257	27	7.3	27	86	6	258	17	19	19	43	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49462826--49462874	20	2.5	19	80	6	62	14	14	6	65	1.45
49466552--49466722	72	2.4	72	87	1	256	26	5	12	54	1.60
49468764--49468803	13	3.1	13	77	0	53	42	17	10	30	1.82
49470587--49470690	28	3.7	28	93	0	172	25	25	25	25	2.00
49471064--49471291	54	4.2	55	82	5	286	18	15	21	44	1.87
49471063--49471293	27	8.6	27	82	5	252	19	15	20	44	1.87
49475519--49475667	43	3.5	43	85	1	192	30	24	18	26	1.98
49477776--49477855	31	2.6	31	89	0	115	43	20	15	21	1.87
49479017--49479050	18	1.9	18	88	5	52	29	5	2	61	1.34
49479244--49479278	7	5.0	7	85	0	52	45	40	0	14	1.45
49479287--49479327	21	2.0	21	85	0	55	51	24	2	21	1.60
49479667--49479835	41	4.0	42	83	6	202	29	29	19	21	1.98
49480052--49480186	58	2.3	57	83	7	166	43	0	3	51	1.24
49480277--49480370	44	2.1	44	82	11	111	37	25	4	32	1.76
49480352--49480406	16	3.4	16	82	0	56	32	23	5	38	1.78
49480570--49480607	20	2.0	20	94	5	69	57	10	7	23	1.58
49481982--49482017	18	2.0	18	94	0	63	30	16	0	52	1.44
49484607--49484756	73	2.1	73	94	0	264	38	3	31	27	1.73
49494365--49494416	26	2.0	26	88	0	77	34	3	7	53	1.48
49497439--49497505	33	2.0	33	97	0	125	28	23	19	28	1.98
49498282--49498362	10	8.3	10	80	10	87	37	1	0	61	1.04
49498284--49498362	19	4.1	19	74	18	74	36	1	0	62	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49498284--49498362	29	2.7	29	81	11	81	36	1	0	62	1.04
49498282--49498362	39	2.1	39	83	4	101	37	1	0	61	1.04
49498456--49498485	10	3.0	10	100	0	60	30	0	0	70	0.88
49502375--49502501	63	2.0	64	87	3	184	45	8	16	29	1.77
49502485--49502523	20	2.0	20	94	0	69	61	5	20	12	1.50
49502390--49502519	63	2.1	63	85	2	172	47	8	16	27	1.75
49512190--49512239	21	2.4	22	83	16	70	24	36	0	40	1.55
49523208--49523605	193	2.1	193	96	0	733	22	22	28	26	1.99
49526247--49526322	37	2.1	37	92	0	125	26	34	18	21	1.96
49526443--49526801	47	7.6	47	92	1	565	29	30	7	32	1.86
49526443--49526801	190	1.9	190	93	0	619	29	30	7	32	1.86
49528215--49528239	13	1.9	13	100	0	50	32	16	20	32	1.94
49531244--49531322	29	2.7	29	86	5	106	27	32	15	24	1.95
49531304--49531492	43	4.4	43	99	0	369	26	34	14	23	1.94
49533343--49533418	37	2.1	37	92	0	125	26	34	18	21	1.96
49533539--49533897	47	7.6	47	91	1	529	29	30	7	32	1.84
49533539--49533897	143	2.5	143	90	0	542	29	30	7	32	1.84
49535311--49535335	13	1.9	13	100	0	50	32	16	20	32	1.94
49535392--49535770	188	2.0	188	99	0	749	44	24	7	22	1.80
49546553--49546658	48	2.2	49	86	1	142	38	5	3	51	1.43
49556127--49556325	38	5.3	38	74	2	150	19	21	25	34	1.96
49556168--49556327	76	2.1	75	84	1	203	19	21	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49556168--49556397	75	3.0	75	82	4	228	17	21	26	33	1.96
49556330--49556448	41	2.9	41	78	0	121	19	19	24	36	1.94
49565141--49565167	14	1.9	14	100	0	54	22	7	7	62	1.46
49571288--49571331	22	2.0	21	83	12	54	40	0	0	59	0.98
49589169--49589203	17	2.0	18	88	5	54	25	0	2	71	1.00
49595249--49595329	26	3.2	26	66	16	78	53	6	12	28	1.62
49595262--49595341	25	3.2	25	66	16	74	55	7	8	28	1.58
49595239--49595341	51	2.0	51	100	0	206	51	7	11	29	1.66
49600429--49600470	19	2.2	20	91	4	68	40	21	0	38	1.53
49604683--49604901	27	8.2	27	83	6	248	45	21	13	20	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226