genome.fa.s24.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  162  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50097990--50098687	47	14.7	47	94	1	1200	29	29	8	32	1.87
50105055--50105105	26	1.9	27	81	18	63	49	13	5	31	1.66
50108521--50108833	158	2.0	158	92	0	518	36	10	12	40	1.78
50110495--50110653	13	11.8	13	74	16	83	42	1	19	37	1.60
50110530--50110571	14	3.2	13	83	6	50	52	0	19	28	1.46
50110508--50110583	27	2.8	26	88	6	107	43	0	21	35	1.53
50110488--50110624	68	2.0	67	85	4	186	43	0	18	36	1.56
50110489--50110651	68	2.4	67	82	7	179	43	1	19	36	1.59
50111162--50111211	25	2.0	25	92	0	82	14	0	28	58	1.37
50111272--50111442	87	2.0	87	100	0	342	39	7	19	33	1.79
50113514--50113617	52	2.0	52	100	0	208	26	17	11	44	1.83
50120403--50120445	23	1.9	22	90	4	68	55	2	6	34	1.39
50120467--50120529	12	5.2	12	70	14	58	55	1	3	39	1.25
50121170--50121224	19	2.7	21	88	11	96	36	12	10	40	1.79
50122888--50122935	20	2.4	20	85	0	60	45	8	12	33	1.72
50125115--50125299	79	2.3	81	80	8	209	25	27	22	23	2.00
50125115--50125299	40	4.7	40	80	7	216	25	27	22	23	2.00
50126467--50126645	85	2.1	85	100	0	358	26	27	8	37	1.85
50133126--50133308	79	2.3	81	82	7	214	25	28	22	23	1.99
50133105--50133308	40	5.1	40	80	8	220	25	28	22	24	1.99
50134477--50134655	85	2.1	85	100	0	358	26	27	8	37	1.85
50135214--50135275	29	2.1	29	84	0	79	43	25	8	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50140002--50140058	29	2.0	29	89	0	87	31	33	12	22	1.91
50144354--50144391	18	2.2	18	90	9	62	21	7	0	71	1.11
50148278--50148327	24	2.1	23	85	10	66	72	0	28	0	0.86
50156877--50156914	20	1.9	20	88	0	58	10	34	18	36	1.85
50160354--50160385	12	2.8	11	90	9	55	28	18	15	37	1.92
50168774--50168816	22	2.0	22	86	9	61	25	6	16	51	1.69
50169550--50169645	50	1.9	50	95	0	174	27	18	19	34	1.96
50170509--50170550	16	2.6	16	92	0	66	33	0	35	30	1.58
50170795--50170829	18	2.0	17	88	5	52	54	0	0	45	0.99
50170929--50170970	15	2.7	16	82	14	52	52	2	0	45	1.13
50170682--50170995	154	2.0	156	95	1	569	44	3	5	46	1.41
50170938--50170979	15	2.9	15	82	10	52	52	0	0	47	1.00
50170927--50171220	120	2.5	121	89	6	442	51	5	2	41	1.38
50171045--50171096	15	3.6	15	80	12	56	53	1	0	44	1.11
50171022--50171112	44	2.1	43	81	6	103	53	3	2	40	1.29
50171181--50171219	17	2.5	15	80	15	51	51	0	5	43	1.24
50171186--50171219	17	2.0	17	94	0	59	50	0	5	44	1.26
50171252--50171446	93	2.1	92	88	4	286	47	4	4	44	1.41
50174049--50174099	24	2.1	24	100	0	102	33	7	23	35	1.84
50178531--50178565	19	1.9	19	88	11	56	45	0	5	48	1.26
50192488--50192534	20	2.3	20	96	0	85	25	10	8	55	1.62
50195299--50195379	36	2.3	34	76	17	83	30	2	4	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50195323--50195449	67	1.9	69	82	9	163	33	3	3	59	1.31
50196764--50196841	29	2.7	29	84	6	86	32	11	17	38	1.86
50196781--50196851	29	2.4	29	90	0	106	33	9	18	38	1.84
50197134--50197164	15	2.0	16	93	6	55	35	0	0	64	0.94
50218611--50218647	9	4.1	9	92	0	65	45	13	10	29	1.77
50218696--50218756	30	2.0	31	87	3	88	19	42	0	37	1.52
50218998--50219058	19	3.4	18	78	19	65	24	22	0	52	1.47
50219248--50219392	40	3.8	39	89	7	201	35	2	0	62	1.10
50219297--50219363	11	6.4	11	72	20	54	35	2	0	61	1.12
50219248--50219365	40	3.0	40	94	1	202	33	3	0	62	1.12
50219305--50219386	29	3.0	28	78	15	82	31	2	0	65	1.05
50225017--50225054	18	2.1	18	85	9	51	44	7	15	31	1.75
50225940--50225998	30	2.0	30	86	6	84	50	0	13	35	1.42
50229954--50230079	44	2.9	43	79	9	121	30	22	16	30	1.96
50230134--50230392	132	2.0	132	91	1	421	25	25	19	28	1.99
50230159--50230383	44	5.1	45	71	10	151	27	25	18	28	1.98
50234316--50234600	51	5.6	51	81	4	303	29	14	25	30	1.94
50234312--50234598	102	2.8	100	84	6	357	29	14	25	30	1.95
50237927--50237981	23	2.4	23	87	0	83	45	0	29	25	1.54
50240752--50240801	22	2.3	20	77	12	55	40	16	0	44	1.47
50240966--50241106	41	3.4	41	89	0	201	32	23	17	26	1.97
50240966--50241123	82	1.9	81	85	1	217	34	23	18	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50240998--50241125	41	3.1	42	83	9	174	35	21	17	25	1.95
50241287--50241500	65	3.3	65	77	10	188	43	14	7	35	1.73
50245953--50245982	15	2.0	15	93	0	51	23	20	6	50	1.71
50248668--50248724	6	9.7	6	81	7	55	70	12	5	12	1.33
50248701--50248753	21	2.6	20	81	3	52	73	5	11	9	1.24
50249596--50249645	7	7.3	7	76	19	52	68	2	16	14	1.31
50251090--50251548	50	9.2	50	70	8	288	33	23	18	24	1.96
50251079--50251548	100	4.7	100	88	2	615	34	23	18	24	1.96
50253040--50253080	3	13.3	3	89	5	64	34	2	0	63	1.08
50258971--50258999	15	1.9	15	100	0	58	31	0	20	48	1.50
50275241--50275303	31	2.0	31	90	6	101	34	20	19	25	1.96
50280555--50280659	54	2.0	52	89	9	160	29	0	15	55	1.41
50281405--50281433	14	2.0	15	93	6	51	31	6	6	55	1.53
50304087--50304147	30	2.0	31	90	3	97	36	0	44	19	1.51
50304196--50304232	9	4.1	9	92	0	65	29	10	13	45	1.77
50308422--50308496	19	3.7	19	70	21	55	65	0	4	30	1.11
50308547--50308586	19	2.0	20	85	4	55	67	0	5	27	1.11
50308570--50308594	13	1.9	13	100	0	50	64	0	4	32	1.12
50308780--50308845	18	3.3	20	70	15	57	31	3	3	62	1.26
50312013--50312077	28	2.3	29	86	7	89	36	1	0	61	1.05
50312281--50312531	91	2.8	89	80	8	262	39	8	15	37	1.78
50312303--50312560	88	2.9	87	82	8	249	39	8	14	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50320532--50320561	12	2.5	12	94	0	51	56	20	0	23	1.42
50320813--50320861	24	2.0	24	100	0	98	32	8	16	42	1.77
50333733--50333779	21	2.2	21	88	0	67	17	38	27	17	1.91
50346179--50346222	3	14.7	3	95	0	79	63	0	0	36	0.95
50348511--50348755	42	5.8	42	89	2	348	22	21	20	35	1.96
50348472--50348757	84	3.4	83	83	6	337	23	20	20	34	1.97
50349137--50349187	21	2.4	21	86	0	75	1	45	17	35	1.60
50356765--50356939	29	6.4	29	77	14	201	23	0	31	45	1.53
50356831--50356870	13	3.2	12	83	16	55	25	0	25	50	1.50
50356765--50356939	53	3.2	54	88	5	246	23	0	31	45	1.53
50356939--50357052	25	4.7	25	69	20	98	42	15	2	38	1.61
50358090--50358142	7	7.6	7	100	0	106	58	13	0	28	1.35
50358283--50358321	20	2.0	20	85	10	53	53	7	2	35	1.43
50359356--50359391	11	3.2	11	96	4	63	47	0	36	16	1.47
50359253--50359376	51	2.4	52	86	5	182	42	0	25	30	1.61
50359666--50359705	5	7.8	5	91	5	62	80	5	0	15	0.88
50360933--50360972	21	1.9	21	89	0	62	75	2	0	22	0.93
50361653--50361744	22	4.2	22	87	5	141	30	29	0	40	1.57
50361716--50361774	30	2.0	30	93	0	100	30	35	0	33	1.58
50361694--50361796	52	2.0	51	85	9	138	32	33	0	34	1.58
50361746--50361787	22	1.9	22	90	0	66	33	33	0	33	1.58
50361831--50361893	29	2.1	30	88	2	92	36	0	1	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50363826--50363875	21	2.4	21	82	0	64	42	32	20	6	1.76
50364050--50364900	149	5.6	151	85	8	916	47	23	0	28	1.55
50364045--50364923	126	6.9	127	80	13	730	47	23	0	28	1.56
50364062--50364768	23	28.9	23	78	14	661	48	23	0	28	1.53
50364045--50364923	51	17.2	57	72	20	513	47	23	0	28	1.56
50364045--50364980	23	36.3	29	72	20	552	46	23	0	29	1.58
50366474--50366730	125	2.1	125	86	2	356	32	21	15	29	1.95
50386282--50386339	30	1.9	30	100	0	116	50	6	22	20	1.72
50393055--50393187	44	3.0	44	92	0	203	27	24	18	28	1.98
50393198--50393507	44	7.0	45	65	7	159	20	25	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226