genome.fa.s24.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  147  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46085134--46085162	12	2.3	13	94	5	51	65	6	6	20	1.40
46089143--46089183	20	2.0	20	100	0	82	34	14	26	24	1.94
46109148--46109204	21	2.7	21	89	5	80	28	22	19	29	1.98
46132332--46132367	17	2.0	17	89	10	54	50	19	2	27	1.62
46133892--46133962	35	2.0	35	97	0	133	59	0	2	38	1.12
46134047--46134077	3	10.3	3	100	0	62	35	0	0	64	0.94
46134459--46134834	124	3.0	124	90	2	560	28	15	22	33	1.94
46136204--46136409	104	2.0	103	93	2	351	19	19	29	31	1.96
46136333--46136482	70	2.1	71	92	1	248	23	16	30	30	1.96
46136443--46136492	26	1.9	26	91	0	82	14	22	34	30	1.93
46140624--46140923	37	8.1	37	95	0	537	46	3	10	40	1.54
46140922--46141602	29	22.8	29	87	6	941	23	0	30	45	1.56
46142798--46142823	7	3.7	7	100	0	52	57	15	0	26	1.38
46143995--46144052	22	2.6	22	91	2	89	44	0	27	27	1.54
46144037--46144069	10	3.0	11	86	13	50	45	0	36	18	1.49
46144456--46144484	13	2.2	13	100	0	58	41	6	6	44	1.58
46148517--46148544	13	2.2	13	100	0	56	64	7	0	28	1.20
46148663--46148719	20	2.8	21	81	5	64	61	0	0	38	0.96
46148663--46148710	21	2.3	20	85	3	60	62	0	0	37	0.95
46148940--46149085	9	16.4	9	72	15	92	30	3	0	65	1.14
46148960--46149039	8	9.6	8	76	16	74	28	2	0	68	1.02
46148939--46149041	25	4.0	25	75	15	70	29	1	0	67	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46149191--46149348	84	1.9	83	80	6	185	33	10	15	41	1.80
46150545--46150588	18	2.4	19	81	14	56	47	4	2	45	1.35
46161390--46161502	30	3.8	29	83	5	145	28	13	20	38	1.90
46161390--46161502	60	1.9	60	88	0	172	28	13	20	38	1.90
46162809--46162847	18	2.1	18	90	4	60	41	7	0	51	1.31
46162809--46162839	9	3.4	9	100	0	62	38	9	0	51	1.35
46163440--46163486	17	2.8	17	77	3	51	63	2	4	29	1.25
46163476--46163526	20	2.7	20	82	14	63	70	3	0	25	1.04
46163459--46163507	25	2.0	25	88	4	73	71	2	0	26	0.97
46163942--46163978	16	2.3	16	100	0	74	51	0	0	48	1.00
46166257--46166298	22	1.9	22	90	0	66	16	28	21	33	1.95
46167317--46167685	22	16.4	22	73	11	205	44	22	10	22	1.82
46167298--46167574	91	3.0	91	94	1	466	45	21	9	23	1.81
46167422--46167483	11	5.6	11	73	7	54	41	25	9	22	1.84
46167410--46167685	113	2.4	113	92	0	444	44	22	10	22	1.83
46167513--46167596	11	7.6	11	74	5	80	44	25	8	22	1.80
46168299--46168413	42	2.7	43	82	1	133	33	22	14	28	1.94
46169519--46169548	15	2.0	15	100	0	60	53	20	0	26	1.46
46175085--46175148	11	5.9	10	78	12	65	48	18	3	29	1.64
46175086--46175270	22	8.3	22	75	5	129	44	20	8	25	1.80
46175085--46175148	33	1.9	33	84	6	85	48	18	3	29	1.64
46175039--46175239	91	2.2	91	80	2	224	43	19	10	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46177207--46177251	23	2.0	23	82	8	56	22	17	20	40	1.92
46178673--46178769	50	1.9	50	93	0	167	25	20	25	27	1.99
46181055--46181694	47	13.4	47	91	3	922	32	9	29	29	1.88
46181055--46181694	238	2.7	236	90	2	978	32	9	29	29	1.88
46181813--46181891	37	2.1	37	90	0	122	24	18	31	25	1.98
46183572--46183729	85	1.9	84	82	5	203	29	7	26	36	1.84
46183789--46183933	43	3.1	44	86	10	184	20	14	35	28	1.92
46183915--46183988	29	2.6	29	89	4	105	25	16	32	25	1.96
46184301--46184575	40	6.9	40	83	2	261	24	22	28	25	1.99
46184301--46184576	120	2.3	120	80	5	290	24	22	28	25	1.99
46187766--46188404	47	13.4	47	88	7	869	32	9	29	29	1.88
46187766--46188353	144	4.1	142	90	5	886	32	8	28	29	1.87
46188117--46188190	22	3.3	22	63	10	60	32	10	28	28	1.91
46187766--46188404	97	6.7	94	88	6	878	32	9	29	29	1.88
46188524--46188602	37	2.1	37	90	0	122	24	18	31	25	1.98
46193970--46194150	51	3.5	51	80	7	197	24	15	25	34	1.95
46193970--46194170	102	2.0	102	86	2	278	24	16	25	32	1.96
46200057--46200097	17	2.3	18	87	4	57	46	19	2	31	1.63
46206447--46206727	147	2.0	135	87	8	400	58	2	22	17	1.52
46208592--46208677	39	2.2	39	80	2	100	25	27	25	20	1.99
46210339--46210434	47	2.0	47	97	0	183	41	5	6	46	1.51
46211008--46211048	21	2.0	21	85	9	57	34	2	7	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46211031--46211128	37	2.7	37	82	7	103	47	1	5	45	1.31
46211063--46211128	10	6.7	10	72	19	50	50	0	3	46	1.16
46211325--46211381	16	3.6	16	85	0	78	29	24	5	40	1.77
46213754--46213786	16	2.0	17	88	5	50	33	0	3	63	1.10
46214055--46214099	9	5.0	9	94	0	81	42	24	11	22	1.86
46214123--46214169	7	6.7	7	90	9	62	25	2	12	59	1.45
46214131--46214175	20	2.2	20	88	7	65	24	0	11	64	1.26
46216700--46216730	16	1.9	16	93	0	53	48	9	6	35	1.62
46216912--46216948	19	2.0	19	89	5	58	35	0	8	56	1.29
46216917--46216985	20	3.5	20	82	11	81	36	0	10	53	1.35
46224930--46225200	131	2.1	130	86	0	371	43	7	15	33	1.73
46232644--46232681	10	3.9	10	79	6	51	57	2	0	39	1.12
46234127--46234282	43	3.7	43	75	14	146	23	16	28	31	1.96
46243328--46243461	36	3.6	36	67	13	101	22	21	20	35	1.96
46243304--46243461	76	2.1	76	86	2	219	24	21	19	34	1.96
46247417--46247490	37	2.0	37	91	0	121	41	9	24	24	1.84
46250076--46250122	21	2.2	21	100	0	94	46	17	14	21	1.83
46251690--46251914	40	5.7	40	85	5	287	25	22	26	25	2.00
46251690--46251947	80	3.2	80	82	7	233	26	21	26	25	2.00
46259709--46259933	40	5.7	40	87	5	305	24	22	27	25	2.00
46259709--46259966	119	2.2	119	81	6	292	25	21	27	25	1.99
46261531--46261649	40	3.1	40	71	18	115	24	18	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46261524--46261639	36	3.0	39	70	19	98	25	18	18	37	1.94
46261525--46261790	76	3.5	75	78	3	221	26	19	17	36	1.94
46264119--46264271	63	2.4	62	82	1	162	28	24	16	31	1.96
46270459--46270516	21	2.8	21	76	7	64	63	5	1	29	1.25
46272382--46272439	23	2.5	22	74	17	55	37	8	13	39	1.76
46272577--46272631	20	2.8	20	76	15	62	70	5	0	23	1.07
46273704--46273762	31	1.9	31	89	6	93	27	23	3	45	1.68
46278775--46278836	31	2.0	31	83	0	79	27	20	3	48	1.65
46281686--46281748	30	2.1	31	82	8	76	49	11	7	31	1.67
46286071--46286119	20	2.5	18	78	18	53	67	2	6	24	1.24
46289585--46289807	101	2.2	100	86	1	311	31	13	24	29	1.94
46289617--46289844	33	6.8	33	68	9	115	31	14	25	28	1.95
46291926--46291950	7	3.6	7	100	0	50	48	36	0	16	1.46
46300512--46300647	50	2.7	50	83	3	166	30	27	17	25	1.97
46301421--46301469	7	7.0	7	95	0	89	44	0	0	55	0.99
46303523--46303674	26	6.0	25	72	14	100	31	5	3	59	1.38
46303632--46303715	37	2.2	39	91	6	136	27	0	4	67	1.10
46303654--46303747	39	2.5	38	79	11	104	22	2	6	69	1.22
46314121--46314205	40	2.1	40	84	4	109	49	12	7	30	1.68
46314226--46314558	86	3.9	86	85	3	386	42	16	9	31	1.79
46316392--46316429	15	2.6	14	84	8	58	44	34	0	21	1.52
46316857--46316953	40	2.5	40	77	1	106	25	25	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46317012--46317049	16	2.3	18	86	13	55	26	21	0	52	1.47
46321044--46321119	38	2.0	38	94	5	136	28	6	17	47	1.72
46322780--46323015	117	2.0	117	97	0	445	38	22	16	22	1.92
46325343--46325491	72	2.1	72	85	7	196	36	10	8	44	1.70
46327159--46327189	4	7.8	4	100	0	62	51	22	0	25	1.48
46328236--46328269	2	17.0	2	100	0	68	50	0	0	50	1.00
46333606--46333646	21	2.0	21	90	0	64	19	29	21	29	1.98
46336340--46336398	31	1.9	31	86	6	84	47	23	8	20	1.77
46338392--46338432	21	2.0	21	90	0	64	19	29	21	29	1.98
46344381--46345079	127	5.5	127	92	0	1116	30	17	22	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226