genome.fa.s24.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  37  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12877710--12877747	17	2.2	17	80	0	58	44	10	5	39	1.61
12883692--12883728	9	4.1	9	86	13	58	32	10	10	45	1.74
12884703--12884750	22	2.2	23	85	7	64	47	2	22	27	1.62
12885341--12885406	25	2.6	25	85	2	87	34	18	19	27	1.95
12886991--12887016	8	3.2	8	100	0	52	38	0	0	61	0.96
12888955--12889018	24	2.7	24	87	0	83	42	28	15	14	1.86
12891944--12891974	9	3.4	9	90	0	53	25	12	22	38	1.90
12892081--12892123	21	2.0	21	82	8	52	20	37	0	41	1.53
12892399--12892444	18	2.6	17	80	19	51	21	32	0	45	1.52
12896071--12896106	15	2.5	14	86	8	54	44	8	0	47	1.33
12896609--12897565	314	3.0	314	89	2	1463	40	10	15	34	1.81
12908356--12908384	14	2.0	15	93	6	51	62	17	6	13	1.52
12908958--12909024	34	1.9	35	90	3	109	32	7	11	47	1.68
12909122--12909154	10	3.3	10	95	0	57	48	0	0	51	1.00
12911593--12911644	25	2.1	25	92	7	88	38	9	26	25	1.86
12911850--12911884	17	2.0	17	88	5	52	48	0	17	34	1.47
12912928--12912969	14	3.1	14	76	10	52	47	23	7	21	1.75
12919400--12919922	87	6.0	87	87	1	719	29	21	23	24	1.99
12926915--12927441	87	6.1	87	86	2	695	29	21	23	25	1.99
12927975--12928027	27	2.0	27	81	7	63	47	24	3	24	1.68
12930896--12930956	27	2.3	28	83	8	74	54	1	6	37	1.37
12939031--12939094	20	3.5	17	72	25	51	75	0	7	17	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12940420--12940455	17	2.1	17	100	0	72	22	13	16	47	1.82
12942560--12942599	20	2.0	20	85	9	55	72	2	2	22	1.09
12943288--12943343	29	1.9	29	88	0	85	55	3	0	41	1.17
12943295--12943357	29	2.2	29	82	0	72	60	3	0	36	1.13
12943330--12943376	24	2.0	23	84	12	60	55	0	0	44	0.99
12948185--12948415	114	2.0	114	94	1	401	32	8	17	41	1.80
12954285--12954318	16	2.1	16	88	0	50	50	14	17	17	1.79
12957115--12957154	21	1.9	21	89	0	62	30	25	30	15	1.95
12958248--12958281	16	2.1	16	88	0	50	50	14	17	17	1.79
12964058--12964217	42	3.8	42	77	1	151	45	17	21	16	1.86
12964049--12964194	21	7.0	21	72	12	84	45	17	21	15	1.86
12964103--12964273	42	4.1	42	76	8	154	46	15	19	18	1.84
12964078--12964234	84	1.9	84	84	5	210	44	16	21	17	1.86
12966585--12966722	9	15.3	9	66	14	54	59	0	2	37	1.15
12966585--12966618	8	4.0	8	88	11	50	61	0	0	38	0.96
12966648--12966697	17	2.8	17	84	6	55	62	0	2	36	1.07
12966937--12967100	44	3.8	44	83	4	174	26	21	16	35	1.95
12968306--12968417	47	2.4	47	80	10	122	62	3	3	30	1.29
12968331--12968419	27	3.2	27	72	12	74	62	3	3	30	1.27
12968404--12968459	19	2.9	18	81	7	58	51	0	1	46	1.11
12968410--12968459	19	2.7	19	82	11	59	50	0	2	48	1.12
12968356--12968504	9	16.6	9	64	18	53	59	1	2	36	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12968894--12968970	19	4.2	18	71	14	59	32	2	2	62	1.23
12969526--12969615	29	3.2	28	79	13	71	62	3	3	31	1.28
12969584--12969643	18	3.2	18	76	17	59	71	3	0	25	1.01
12969612--12969676	18	3.3	20	82	14	73	66	0	0	33	0.92
12969614--12969676	19	3.3	19	80	18	69	65	0	0	34	0.93
12970429--12970483	28	2.0	27	82	13	67	30	5	3	60	1.37
12973879--12973926	13	3.5	13	76	20	53	0	20	0	79	0.74
12976110--12976188	23	3.4	23	80	3	88	34	3	6	55	1.43
12978263--12978375	51	2.2	52	81	6	133	55	6	6	31	1.49
12978637--12978676	3	13.3	3	84	10	55	67	0	0	32	0.91
12978639--12978690	12	4.1	12	81	16	52	69	1	0	28	0.99
12978899--12978937	19	2.0	21	85	10	55	69	5	10	15	1.34
12980440--12980625	36	4.9	36	82	12	237	29	19	12	38	1.89
12980512--12980664	46	3.6	45	76	17	180	28	22	12	37	1.90
12980476--12980664	82	2.3	82	93	0	315	28	21	12	38	1.89
12980397--12980625	118	2.0	115	92	2	386	28	20	13	37	1.91
12981739--12981763	12	2.1	12	100	0	50	56	0	0	44	0.99
12982024--12982099	21	3.7	21	87	7	120	36	11	10	40	1.76
12982037--12982100	19	3.3	19	93	4	101	37	14	9	39	1.78
12982772--12982810	19	2.0	20	90	5	62	56	0	5	38	1.22
12988938--12989037	41	2.4	41	86	0	137	17	14	30	39	1.88
12988920--12989066	41	3.6	41	75	3	116	17	17	29	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13002298--13002393	38	2.4	41	74	10	92	51	1	4	43	1.28
13007157--13007205	26	2.0	24	88	8	71	65	4	0	30	1.11
13007691--13007761	31	2.3	32	82	7	92	52	8	11	28	1.66
13008622--13008669	19	2.7	18	84	9	62	66	0	2	31	1.03
13008625--13008678	19	3.2	16	78	19	56	61	0	1	37	1.07
13010436--13010479	23	1.9	23	86	9	63	34	0	2	63	1.07
13017213--13017338	66	1.9	66	98	0	243	26	36	18	19	1.94
13017460--13017607	57	2.5	60	83	9	187	22	25	22	30	1.99
13025227--13025255	4	7.5	4	92	7	51	24	0	24	51	1.48
13029364--13029407	16	2.7	16	85	3	61	59	0	0	40	0.98
13029908--13029933	7	3.7	7	100	0	52	46	0	0	53	1.00
13030099--13030141	21	2.0	22	86	13	63	55	6	9	27	1.57
13042878--13042933	22	2.5	23	91	2	87	51	1	1	44	1.22
13042907--13042963	16	3.6	16	92	0	96	45	3	5	45	1.43
13043009--13043191	93	2.0	93	95	0	330	39	4	7	48	1.52
13043109--13043159	16	2.8	19	67	27	56	37	0	11	50	1.39
13059515--13059541	14	1.9	14	100	0	54	33	0	0	66	0.92
13070685--13070769	25	3.4	25	85	3	109	20	28	21	30	1.98
13070725--13070789	25	2.6	25	80	2	69	23	26	18	32	1.97
13073870--13073912	12	3.2	13	87	9	52	2	27	0	69	1.00
13074843--13074881	18	2.3	18	86	8	55	43	12	5	38	1.65
13075038--13075068	15	2.1	15	100	0	62	22	32	6	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13078428--13078457	15	2.0	15	93	0	51	23	46	6	23	1.75
13079198--13079236	18	2.3	18	86	8	55	43	12	5	38	1.65
13079390--13079420	15	2.1	15	100	0	62	22	32	6	38	1.80
13080585--13080686	50	2.0	50	100	0	204	32	13	20	33	1.92
13085372--13085417	16	2.8	17	74	9	51	43	2	2	52	1.25
13088321--13088347	6	4.5	6	100	0	54	33	14	14	37	1.88
13115262--13115332	37	1.9	37	91	0	115	53	9	16	19	1.71
13117292--13117362	25	2.8	25	78	4	72	23	25	18	32	1.97
13122492--13122565	19	4.1	19	70	15	57	63	1	4	31	1.21
13122898--13123098	90	2.2	90	81	8	223	31	8	21	37	1.84
13133245--13133314	36	2.0	35	88	2	104	35	11	5	47	1.64
13143911--13144088	27	6.6	27	83	3	205	26	15	28	29	1.96
13143912--13144067	82	1.9	81	88	3	233	26	15	28	29	1.96
13143908--13144088	82	2.2	81	83	2	229	27	15	27	29	1.96
13145892--13145995	49	2.1	49	90	0	163	32	8	10	48	1.68
13147455--13147488	17	2.0	17	100	0	68	41	0	0	58	0.98
13147482--13147543	13	4.6	13	73	15	54	38	0	4	56	1.21
13147482--13147543	26	2.3	26	83	10	72	38	0	4	56	1.21
13147386--13147988	120	5.0	120	96	0	1073	42	1	4	51	1.29
13153807--13153832	13	2.0	13	100	0	52	0	23	0	76	0.78
13158553--13158616	32	2.0	32	90	0	101	39	3	7	50	1.47
13176725--13176759	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13176779--13176825	24	2.0	24	84	15	64	51	4	4	40	1.41
13184803--13185104	46	6.5	44	87	8	327	35	13	21	29	1.92
13184744--13185104	98	3.8	94	85	9	473	34	13	21	29	1.92
13184744--13185093	144	2.4	144	96	0	646	34	14	21	30	1.92
13185068--13185176	37	3.0	37	90	2	177	35	16	22	24	1.95
13186786--13186839	17	2.8	19	78	16	58	0	9	12	77	0.98
13187368--13187430	32	2.0	32	96	3	119	42	15	9	31	1.79
13194556--13194586	14	2.2	14	94	0	53	41	3	6	48	1.45
13195010--13195050	18	2.3	18	76	15	50	58	4	0	36	1.20
13195010--13195051	19	2.4	19	80	11	54	57	4	0	38	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226