genome.fa.s24.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  202  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60541367--60541399	16	2.1	16	100	0	66	27	6	12	54	1.60
60541370--60541406	16	2.3	16	90	0	56	29	5	5	59	1.42
60549951--60549976	12	2.2	12	100	0	52	15	15	23	46	1.83
60549994--60550088	40	2.4	40	82	6	106	34	22	18	24	1.96
60550156--60550303	41	3.6	41	82	0	188	25	19	22	31	1.98
60550726--60550764	14	2.8	14	84	0	51	25	0	30	43	1.55
60553835--60553866	15	2.1	15	100	0	64	37	21	6	34	1.79
60556905--60556956	26	2.0	26	96	0	95	34	0	25	40	1.56
60561326--60561501	87	2.0	85	83	2	217	29	13	14	42	1.84
60566175--60566225	25	2.1	25	88	3	77	56	1	1	39	1.22
60566415--60566465	21	2.4	21	80	0	66	39	25	0	35	1.56
60577180--60577245	34	1.9	35	93	3	116	18	12	28	40	1.86
60582391--60582622	123	1.9	123	85	1	322	21	18	33	26	1.96
60582909--60582969	26	2.3	26	83	5	70	63	6	9	19	1.46
60588277--60588335	29	2.0	29	100	0	118	30	13	23	32	1.93
60589715--60589801	20	4.3	19	76	15	68	52	4	2	40	1.34
60597430--60597474	19	2.4	19	77	3	56	75	4	0	20	0.97
60597593--60597627	11	3.2	11	88	11	54	0	54	0	45	0.99
60598094--60598161	3	22.3	3	73	8	57	30	0	7	61	1.23
60598101--60598172	23	3.1	23	82	11	67	31	1	11	55	1.43
60598105--60598161	26	2.3	26	84	6	73	31	0	8	59	1.28
60598500--60598631	64	2.1	64	83	11	164	37	4	2	56	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60598562--60598621	20	3.0	18	76	21	57	35	5	1	58	1.30
60609803--60610329	44	11.7	44	68	14	161	32	19	21	26	1.97
60609799--60610057	131	2.0	130	86	4	360	30	19	22	27	1.98
60609979--60610413	44	9.6	44	72	15	255	32	19	21	27	1.97
60610007--60610275	141	1.9	142	87	5	402	31	19	21	27	1.97
60611308--60611360	19	2.9	19	75	8	58	77	3	0	18	0.92
60611969--60612018	14	3.5	14	76	12	57	34	0	8	58	1.28
60611972--60612009	11	3.2	12	88	11	60	34	0	7	57	1.28
60611963--60612026	3	21.3	3	72	12	51	31	0	6	62	1.20
60611972--60612029	23	2.5	23	86	10	75	32	0	8	58	1.28
60611992--60612037	23	2.0	23	83	8	58	30	2	10	56	1.46
60618708--60618745	20	1.9	20	84	10	51	31	5	5	57	1.43
60620301--60620420	58	2.1	58	88	3	179	40	7	15	35	1.76
60624655--60624694	21	1.9	21	84	0	53	37	0	0	62	0.95
60629750--60629799	22	2.3	21	82	3	64	64	0	4	32	1.12
60631895--60631938	16	2.8	16	82	3	54	65	0	0	34	0.93
60631895--60631971	15	5.1	15	77	13	77	61	2	0	36	1.10
60631916--60631994	15	5.2	15	74	21	58	64	3	0	31	1.11
60631898--60632009	45	2.5	44	80	12	129	63	2	1	32	1.19
60632137--60632199	12	5.8	11	75	16	60	0	17	0	82	0.67
60632141--60632199	17	3.6	17	84	11	79	0	18	0	81	0.69
60632604--60632652	18	2.7	18	80	0	53	0	40	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60632604--60632654	10	5.3	10	77	15	54	0	39	0	60	0.97
60632878--60633034	59	2.6	59	83	10	187	41	1	21	35	1.62
60632878--60633018	30	4.8	28	74	14	124	40	0	23	35	1.60
60632881--60633034	30	5.2	29	70	17	102	42	1	21	35	1.61
60633207--60633680	77	6.1	76	84	8	521	34	19	17	27	1.95
60633207--60633682	157	3.1	154	82	9	524	34	19	17	27	1.95
60633240--60633659	78	5.4	78	84	6	446	33	20	16	28	1.95
60636457--60636524	34	2.0	34	94	0	118	22	22	25	30	1.99
60639500--60639637	39	3.4	39	88	6	177	39	17	21	22	1.93
60639493--60639637	45	3.3	44	80	12	174	39	17	20	22	1.92
60643392--60643424	9	3.7	9	84	15	50	9	12	6	72	1.26
60643381--60643438	18	3.2	18	90	4	82	12	12	6	68	1.37
60644242--60644318	35	2.2	37	80	15	92	49	5	0	45	1.24
60650934--60651134	43	4.7	43	76	6	176	25	13	26	33	1.94
60650934--60651134	87	2.3	85	82	5	228	25	13	26	33	1.94
60651316--60651424	44	2.5	44	92	3	184	27	16	24	31	1.96
60654239--60654287	22	2.2	23	78	10	57	67	2	4	26	1.19
60656270--60656309	3	13.7	3	92	5	64	35	2	0	62	1.09
60656680--60656722	19	2.3	19	88	8	61	32	6	0	60	1.23
60656706--60656734	10	2.9	10	100	0	58	31	17	0	51	1.45
60659406--60659470	26	2.6	26	82	4	80	56	3	3	36	1.30
60659420--60659462	13	3.3	13	75	12	52	51	4	4	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60659073--60659867	365	2.2	366	97	0	1502	39	6	6	47	1.53
60659771--60659835	26	2.6	26	82	4	80	56	3	3	36	1.30
60659785--60659827	13	3.3	13	75	12	52	51	4	4	39	1.44
60667038--60667080	22	2.0	22	85	0	59	51	2	2	44	1.27
60667631--60667673	18	2.4	19	77	22	56	27	0	2	69	1.00
60668974--60669009	14	2.6	14	86	0	54	8	36	0	55	1.30
60671863--60671900	19	2.0	20	89	5	60	34	0	2	63	1.09
60678459--60678502	23	1.9	23	100	0	88	38	13	0	47	1.43
60679145--60679218	32	2.2	35	83	13	102	44	2	2	50	1.30
60680802--60681039	44	5.5	43	69	11	137	33	21	20	24	1.97
60680769--60681138	128	2.9	128	89	3	514	31	22	20	25	1.98
60683595--60683645	12	4.4	12	76	18	63	39	13	0	47	1.43
60687255--60687387	71	1.9	72	84	4	180	26	21	24	28	1.99
60689403--60689521	41	2.9	41	79	9	136	26	26	17	30	1.97
60690889--60690923	18	2.0	17	88	5	52	45	0	0	54	0.99
60690866--60691040	59	2.9	61	68	13	162	45	1	5	48	1.34
60694916--60695116	43	4.7	43	78	6	194	25	15	26	32	1.95
60695298--60695406	44	2.5	44	90	3	175	27	14	24	33	1.95
60695927--60696030	41	2.6	41	84	1	120	25	21	18	35	1.95
60696784--60696820	17	2.2	16	90	4	56	0	13	10	75	1.04
60697474--60697524	3	16.7	3	80	11	59	29	3	3	62	1.31
60704086--60704132	18	2.6	18	80	10	51	72	0	4	23	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60705838--60705869	3	10.7	3	100	0	64	31	0	0	68	0.90
60710122--60710231	22	4.9	23	81	10	129	71	8	4	15	1.26
60710121--60710238	45	2.7	46	84	6	145	72	8	4	15	1.25
60712510--60713076	88	6.6	88	75	8	533	29	20	23	26	1.99
60712708--60713102	177	2.2	177	80	1	416	29	20	23	26	1.99
60713323--60713979	50	13.2	50	71	2	433	29	19	21	28	1.98
60713270--60713979	100	7.1	100	86	0	913	30	19	21	28	1.98
60713986--60714183	44	4.6	43	79	7	197	31	21	19	26	1.97
60713991--60714234	44	5.7	42	74	10	165	32	20	20	26	1.97
60713986--60714183	84	2.3	86	79	6	231	31	21	19	26	1.97
60713991--60714239	128	1.9	128	90	0	390	32	21	20	26	1.97
60715123--60715159	17	2.2	16	90	4	56	0	13	10	75	1.04
60715815--60715874	3	19.7	3	83	10	77	30	3	3	63	1.27
60722427--60722485	29	2.0	28	87	6	82	69	1	5	23	1.18
60729708--60729750	11	3.7	11	82	11	50	18	4	2	74	1.10
60730837--60730909	32	2.2	34	88	9	107	45	2	2	49	1.31
60735359--60735394	18	1.9	18	88	5	54	36	0	0	63	0.94
60738144--60738183	20	2.0	20	100	0	80	35	10	5	50	1.58
60748618--60748678	32	1.9	32	96	0	113	52	14	11	21	1.73
60752560--60752602	21	2.0	21	95	0	77	27	0	37	34	1.57
60752583--60752615	16	2.1	16	94	0	57	33	0	36	30	1.58
60752594--60752688	45	2.1	44	88	1	136	34	5	27	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60752850--60752884	18	2.0	17	88	5	52	54	0	0	45	0.99
60752808--60752880	27	2.7	27	76	8	76	52	2	0	45	1.15
60752769--60753040	144	1.9	147	94	3	487	47	3	2	46	1.34
60752994--60753028	18	2.0	17	88	5	52	54	0	0	45	0.99
60753014--60753192	55	3.1	54	64	22	128	49	7	2	41	1.43
60753009--60753196	61	3.1	61	68	14	190	49	6	2	41	1.41
60752977--60753199	120	1.9	120	97	0	419	49	6	2	42	1.40
60753114--60753148	18	2.0	17	88	5	52	60	0	0	40	0.97
60753189--60753235	17	2.9	16	78	18	53	46	2	6	44	1.40
60753208--60753241	17	2.0	17	94	0	59	50	0	5	44	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226