genome.fa.s24.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  149  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46698610--46698638	6	4.8	6	100	0	58	48	0	0	51	1.00
46699035--46699086	25	2.1	24	86	10	70	26	3	5	63	1.34
46705464--46705545	40	2.0	40	100	0	164	32	9	25	31	1.88
46717099--46717192	49	1.9	49	86	0	134	27	25	19	27	1.99
46721830--46721894	25	2.6	24	76	9	58	1	15	3	80	0.92
46721839--46721894	17	3.2	18	78	16	57	1	12	3	82	0.88
46721831--46721894	15	4.1	16	72	11	53	1	14	3	81	0.89
46732846--46733030	79	2.3	81	83	7	227	24	22	27	24	2.00
46732847--46733030	40	4.6	40	82	9	207	25	22	27	24	2.00
46732899--46733063	79	2.1	79	83	6	201	26	21	27	24	1.99
46740731--46740915	40	4.7	40	79	6	198	25	22	26	25	2.00
46740784--46740948	79	2.1	79	80	6	183	27	20	26	25	1.99
46742344--46742381	19	2.0	19	85	10	51	21	39	2	36	1.67
46754230--46754294	28	2.3	28	94	0	112	26	24	12	36	1.91
46762303--46762359	27	2.1	27	96	0	105	31	29	10	28	1.90
46778127--46778164	18	2.1	18	90	5	58	5	15	0	78	0.91
46785044--46785076	13	2.7	13	90	9	52	36	12	15	36	1.84
46785754--46785812	30	1.9	31	89	3	93	45	6	16	30	1.74
46786278--46786621	102	3.4	101	89	2	469	28	16	26	28	1.97
46786278--46786615	51	6.7	50	82	5	376	28	16	26	28	1.97
46789052--46789112	29	2.1	28	82	8	70	54	4	4	36	1.44
46789336--46789371	17	2.1	18	89	5	56	69	5	2	22	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46791048--46791214	45	3.7	45	80	0	165	24	25	21	28	1.99
46791224--46791335	44	2.6	44	85	7	140	26	23	18	31	1.98
46791369--46791893	267	2.0	267	87	0	771	25	27	20	27	1.99
46796129--46796164	17	2.1	18	89	5	56	69	5	2	22	1.22
46797483--46797641	27	5.9	27	86	7	189	21	19	20	38	1.94
46797483--46797641	81	2.0	81	86	5	223	21	19	20	38	1.94
46800384--46800637	27	9.4	27	84	5	298	19	17	20	42	1.89
46800381--46800640	109	2.4	107	84	6	344	20	17	20	42	1.90
46802223--46802415	50	3.8	50	88	0	260	22	31	21	24	1.98
46805379--46805414	18	2.0	18	94	0	63	30	11	8	50	1.67
46805915--46806135	121	1.8	121	90	3	356	28	14	15	41	1.86
46811808--46811838	16	1.9	16	100	0	62	32	12	3	51	1.56
46814744--46814898	72	2.1	73	94	3	278	23	14	31	29	1.95
46823300--46823542	50	4.8	50	86	1	326	24	20	31	23	1.98
46832999--46833261	40	6.6	40	87	3	316	24	20	28	26	1.99
46833038--46833296	80	3.3	80	84	3	238	25	20	28	25	1.99
46840944--46841128	39	4.8	40	86	6	238	25	18	28	27	1.98
46840919--46841126	76	2.7	77	82	8	244	25	19	28	26	1.99
46874097--46874229	69	1.9	70	90	1	214	32	14	16	36	1.89
46875998--46876237	48	5.0	48	93	2	372	34	6	28	30	1.82
46875998--46876230	98	2.4	97	91	1	369	34	6	28	30	1.82
46876373--46876487	37	3.1	37	90	5	162	26	17	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46883110--46883204	38	2.5	39	85	1	129	22	34	12	30	1.91
46892245--46892294	24	2.1	23	85	10	66	36	0	2	62	1.07
46892269--46892308	15	2.4	18	80	16	50	37	0	2	60	1.11
46892268--46892431	60	2.8	57	84	10	192	42	1	2	53	1.21
46898609--46899147	266	2.0	267	98	0	1044	35	25	5	33	1.79
46904623--46904677	25	2.2	25	93	6	94	56	0	3	40	1.17
46906271--46906320	21	2.2	23	82	10	59	8	8	8	76	1.18
46906271--46906320	24	2.1	24	84	0	64	8	8	8	76	1.18
46906543--46906572	12	2.5	12	94	0	51	73	0	0	26	0.84
46910628--46910676	20	2.5	20	86	0	71	16	22	4	57	1.56
46911350--46911408	21	2.7	22	74	10	59	44	13	8	33	1.74
46913091--46913125	18	1.9	18	88	0	52	42	11	17	28	1.83
46918258--46918288	16	1.9	16	100	0	62	38	3	0	58	1.15
46924505--46924890	27	14.3	27	86	4	471	39	17	16	26	1.91
46925051--46925139	27	3.3	27	81	7	83	20	30	20	29	1.97
46928032--46928061	15	2.0	15	93	0	51	16	0	6	76	0.99
46929265--46929310	18	2.3	20	75	17	51	34	2	13	50	1.53
46929783--46929875	20	4.7	20	70	10	64	17	27	21	33	1.96
46932390--46932454	27	2.4	27	78	2	67	29	27	24	18	1.98
46932560--46932633	26	2.8	26	83	6	87	41	20	20	17	1.90
46932806--46933113	27	11.4	27	85	2	404	17	20	18	44	1.87
46942887--46942993	25	4.4	24	74	8	90	32	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46946106--46946323	27	8.1	27	78	6	84	20	15	23	39	1.91
46946142--46946338	27	7.3	27	80	3	227	18	15	24	41	1.89
46949713--46949860	27	5.5	27	84	4	183	18	16	18	45	1.86
46958318--46958364	24	1.9	24	86	4	67	36	0	38	25	1.56
46959179--46959209	14	2.2	14	94	0	53	19	9	45	25	1.81
46959527--46959709	27	6.8	27	84	3	208	40	19	18	21	1.91
46959550--46959700	80	1.9	80	94	0	266	42	18	17	21	1.89
46962871--46962904	13	2.5	13	90	4	50	52	5	2	38	1.41
46965060--46965172	57	2.0	57	96	0	208	51	21	3	23	1.63
46969219--46969318	26	3.9	26	86	1	121	37	20	21	22	1.95
46969485--46969642	27	5.9	27	86	0	208	17	17	20	44	1.87
46969485--46969651	81	2.1	81	87	4	239	17	16	20	44	1.86
46972354--46972425	31	2.3	32	95	2	128	50	13	19	16	1.79
46978329--46978538	46	4.6	46	78	2	181	27	19	21	31	1.98
46978464--46978552	46	1.9	46	81	4	108	24	16	26	31	1.97
46981954--46981986	16	2.1	16	100	0	66	33	36	24	6	1.80
46989709--46989755	18	2.8	17	78	12	60	55	0	4	40	1.19
46989713--46989749	16	2.3	16	90	9	58	59	0	2	37	1.12
46989712--46989755	17	2.6	17	80	20	56	56	0	4	38	1.20
46993016--46993264	27	9.2	26	81	7	205	23	15	19	41	1.89
46993016--46993289	81	3.4	81	80	7	299	24	14	18	42	1.88
46993016--46993289	54	5.1	53	80	7	268	24	14	18	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46993055--46993289	27	8.7	27	83	4	226	23	12	19	43	1.85
46997496--46997741	122	2.0	122	99	0	483	26	9	15	48	1.76
47005112--47005211	3	33.3	3	100	0	200	67	0	33	0	0.91
47011073--47011109	15	2.5	15	87	12	51	67	8	0	24	1.17
47011318--47011360	11	3.5	12	81	12	52	76	2	0	20	0.89
47011630--47011714	42	2.0	42	95	0	152	36	29	16	17	1.92
47013030--47013440	44	9.3	43	74	5	295	30	27	15	27	1.96
47013022--47013440	88	4.8	87	80	4	394	31	27	14	26	1.95
47013032--47013442	132	3.1	131	85	2	500	30	27	14	27	1.95
47013011--47013415	220	1.8	220	88	1	623	30	27	14	27	1.95
47013917--47014113	108	1.8	109	91	3	326	44	11	18	25	1.83
47014079--47014179	45	2.2	45	74	10	107	51	8	13	25	1.70
47025654--47025691	20	1.9	20	100	0	76	81	2	0	15	0.80
47026048--47026139	36	2.6	36	98	0	175	22	25	27	25	2.00
47033552--47034043	165	3.0	165	94	0	867	34	6	23	35	1.81
47036403--47036604	105	1.9	104	84	5	264	25	21	29	23	1.99
47043017--47043054	18	2.2	17	90	4	58	15	2	2	78	0.97
47045137--47045203	21	3.3	20	76	16	68	31	4	1	62	1.24
47052242--47052274	16	2.1	16	94	0	57	24	9	36	30	1.86
47052893--47052983	40	2.3	40	82	0	101	40	8	18	31	1.81
47053991--47054069	38	2.1	38	100	0	158	32	35	10	21	1.87
47055090--47055157	34	1.9	37	85	8	97	25	20	2	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47069729--47069777	21	2.3	21	96	0	89	20	16	46	16	1.83
47075522--47075607	3	27.7	3	69	19	52	61	3	4	30	1.33
47075519--47075595	30	2.5	30	83	12	86	59	3	5	31	1.37
47076215--47076251	6	5.8	6	93	6	56	78	0	2	18	0.87
47083087--47083170	42	2.0	41	83	2	105	20	25	23	30	1.98
47083091--47083179	42	2.1	41	80	8	99	23	25	21	29	1.99
47086063--47086149	42	2.1	42	100	0	174	42	22	11	22	1.86
47089470--47089648	25	7.4	25	80	9	210	21	24	16	37	1.94
47089572--47089610	19	2.1	19	95	0	69	23	30	12	33	1.92
47089604--47089689	22	3.8	22	81	4	91	18	25	19	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226