genome.fa.s24.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  207  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61896763--61896905	60	2.4	60	85	2	180	16	36	32	13	1.89
61896804--61896881	13	5.4	13	69	21	57	10	38	35	15	1.81
61896798--61896919	60	2.0	60	87	0	172	14	38	32	13	1.86
61902514--61902561	21	2.3	21	82	3	53	33	14	25	27	1.94
61902774--61902809	10	3.6	10	84	0	54	22	0	2	75	0.94
61902819--61902866	19	2.5	19	83	13	62	37	0	6	56	1.25
61908652--61908771	63	1.9	62	80	8	136	55	14	6	23	1.62
61909270--61909317	5	9.2	5	77	8	51	56	0	41	2	1.11
61909281--61909325	22	2.0	22	82	4	54	53	0	44	2	1.13
61910370--61910404	3	11.7	3	93	0	61	65	2	0	31	1.07
61910610--61910675	28	2.4	28	85	9	93	45	4	3	46	1.38
61911972--61912010	18	2.1	18	85	4	51	35	0	0	64	0.94
61912737--61912770	18	1.9	17	94	5	59	29	0	0	70	0.87
61920325--61920357	6	5.5	6	100	0	66	54	0	30	15	1.41
61937783--61937943	45	3.6	45	95	0	277	26	19	14	40	1.89
61943374--61943412	15	2.6	15	83	0	60	17	10	2	69	1.28
61944145--61944260	45	2.6	45	98	0	223	25	19	13	40	1.89
61951968--61951998	9	3.4	9	90	0	53	25	12	22	38	1.90
61952302--61952361	30	2.0	31	83	9	79	20	38	0	41	1.52
61952619--61952647	9	3.2	9	100	0	58	31	0	0	68	0.89
61953128--61953153	5	5.2	5	100	0	52	19	19	19	42	1.90
61956698--61956743	24	2.0	24	87	8	69	50	17	8	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61960936--61960972	16	2.1	19	85	14	53	75	8	13	2	1.13
61961899--61962387	45	11.0	45	74	4	391	26	23	18	30	1.98
61961926--61962387	89	5.2	89	90	1	676	27	23	18	30	1.98
61961990--61962385	44	8.9	44	75	4	357	27	23	18	31	1.97
61963660--61963754	46	2.0	47	87	2	138	11	27	16	44	1.83
61963666--61963765	46	2.1	47	81	3	112	13	27	16	44	1.84
61969208--61969244	16	2.1	19	85	14	53	75	8	13	2	1.13
61970015--61970070	26	2.2	26	100	0	112	25	23	7	44	1.78
61970291--61970318	8	3.5	8	100	0	56	89	0	0	10	0.49
61975378--61975425	13	3.7	13	82	17	55	87	4	4	4	0.74
61975378--61975426	21	2.4	20	83	12	64	87	4	4	4	0.73
61975378--61975427	26	1.9	26	84	8	66	86	6	4	4	0.80
61975402--61975428	14	1.9	14	100	0	54	85	7	0	7	0.75
61976027--61976084	30	1.9	30	100	0	116	43	12	3	41	1.59
61977650--61977707	30	1.9	30	89	0	89	34	8	17	39	1.80
61987486--61987539	20	2.7	20	80	11	65	64	3	0	31	1.11
61987492--61987531	21	1.9	21	90	10	64	67	5	0	27	1.11
61987685--61987728	20	2.2	20	84	8	54	45	2	0	52	1.13
61988261--61988325	11	5.8	12	79	15	68	24	30	1	43	1.64
61989518--61989543	7	3.7	7	100	0	52	26	0	15	57	1.38
61990796--61991170	125	3.0	125	92	0	597	31	22	16	29	1.96
61993108--61993413	42	7.2	42	88	3	409	31	21	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61993108--61993413	85	3.6	84	86	4	420	31	21	23	23	1.98
61993120--61993412	127	2.3	126	89	1	444	32	21	22	23	1.98
61993892--61993919	12	2.3	12	100	0	56	0	42	17	39	1.50
61993904--61993961	21	2.8	21	84	5	73	3	39	20	36	1.70
61999467--61999621	9	17.8	9	70	14	110	31	3	20	45	1.67
61999460--61999688	16	14.1	16	67	18	102	32	2	19	45	1.64
61999512--61999550	19	2.1	19	85	9	53	30	0	17	51	1.46
61999532--61999637	25	4.2	24	74	10	79	30	1	21	46	1.62
61999505--61999621	25	4.6	25	75	12	94	29	0	22	47	1.57
61999625--61999668	19	2.3	19	92	0	70	36	0	18	45	1.49
61999741--61999786	13	3.8	13	78	21	64	36	0	21	41	1.54
61999734--61999795	22	2.8	22	92	2	97	37	0	17	45	1.49
62001299--62001340	19	2.2	19	100	0	84	9	21	9	59	1.57
62001305--62001346	19	2.2	19	91	0	66	14	21	7	57	1.61
62003170--62003293	7	17.0	7	67	17	56	33	43	0	21	1.59
62003170--62003273	22	4.7	21	74	14	93	33	44	0	21	1.59
62003196--62003265	15	4.7	15	85	5	97	31	44	1	22	1.62
62003196--62003290	29	3.2	29	86	3	109	31	45	1	22	1.59
62003190--62003272	15	5.6	15	80	7	80	31	45	1	21	1.60
62003170--62003290	22	5.5	22	74	8	77	33	44	0	21	1.58
62004044--62004254	41	5.1	41	71	12	121	34	27	16	21	1.95
62004068--62004212	41	3.5	42	73	10	122	35	24	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62007546--62007570	13	1.9	13	100	0	50	24	0	12	64	1.27
62012863--62012888	13	2.0	13	100	0	52	30	0	7	61	1.24
62015609--62015796	59	3.2	59	66	11	150	41	3	3	51	1.35
62015598--62015886	119	2.4	120	93	2	492	43	2	4	50	1.34
62015718--62015773	15	3.5	18	75	24	63	42	0	0	57	0.99
62015672--62015854	56	3.1	58	66	23	146	42	2	6	49	1.39
62015838--62015872	18	2.0	17	88	5	52	45	0	0	54	0.99
62015826--62016100	147	1.9	149	95	1	500	47	2	3	46	1.35
62015985--62016019	18	2.0	17	88	5	52	45	0	0	54	0.99
62016181--62016275	45	2.1	44	84	1	118	34	25	5	34	1.78
62018474--62018514	20	2.2	18	86	8	55	43	9	2	43	1.50
62019694--62019755	32	2.0	32	87	6	92	35	3	9	51	1.51
62019694--62019765	30	2.3	32	83	9	78	34	4	9	51	1.54
62023903--62023927	13	1.9	13	100	0	50	24	0	12	64	1.27
62026853--62026912	29	2.0	30	87	3	86	31	3	10	55	1.50
62026860--62026920	30	2.0	31	83	3	79	32	4	6	55	1.47
62028972--62029039	20	3.4	20	78	8	75	39	1	13	45	1.52
62033740--62033769	16	1.9	16	93	6	53	53	0	3	43	1.17
62038404--62038480	31	2.5	30	74	15	77	57	1	2	38	1.21
62052534--62052601	34	2.0	34	94	0	118	10	19	13	57	1.64
62056188--62056277	49	1.9	47	82	13	114	28	11	11	48	1.73
62067319--62067382	13	4.9	13	80	0	83	37	25	6	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62068190--62068227	20	1.9	20	94	0	67	34	2	0	63	1.09
62068191--62068238	20	2.4	20	86	6	62	37	2	0	60	1.09
62070598--62070790	98	2.0	98	93	0	332	37	23	9	28	1.87
62071316--62071517	108	1.9	108	83	5	264	50	5	10	33	1.61
62074629--62074702	38	2.0	37	84	7	98	28	16	22	32	1.96
62080414--62080472	31	2.0	30	86	6	84	42	11	8	37	1.72
62080407--62080475	31	2.4	27	79	13	75	40	13	8	37	1.75
62086176--62086213	14	2.7	14	80	11	51	44	0	0	55	0.99
62089771--62089831	26	2.3	26	75	13	61	54	0	1	44	1.10
62091606--62091675	19	3.5	20	73	21	58	55	1	1	41	1.17
62091606--62091666	19	3.2	19	76	19	65	54	1	1	42	1.20
62091609--62091673	20	3.3	18	75	23	53	56	1	1	40	1.18
62094249--62094273	10	2.5	10	100	0	50	64	8	20	8	1.46
62098576--62098600	10	2.5	10	100	0	50	64	8	20	8	1.46
62100223--62100274	18	2.7	21	74	17	58	57	1	0	40	1.10
62105117--62105172	20	2.8	20	80	2	58	3	7	8	80	1.01
62105495--62105527	14	2.3	15	89	5	50	18	0	0	81	0.68
62108832--62108886	11	4.8	12	77	20	55	54	12	16	16	1.71
62108838--62108886	23	2.1	23	100	0	98	51	14	16	18	1.77
62109183--62109230	25	2.0	25	83	4	62	37	12	25	25	1.91
62132451--62132487	2	18.5	2	100	0	74	0	51	0	48	1.00
62133823--62133948	65	1.9	65	95	0	225	53	9	2	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62139542--62139576	17	2.0	17	88	5	52	34	0	2	62	1.10
62144352--62144382	15	2.1	15	94	5	55	32	38	16	12	1.86
62149040--62149082	16	2.8	16	86	6	63	0	58	0	41	0.98
62149041--62149088	23	2.0	24	84	11	64	0	54	0	45	0.99
62150013--62150046	15	2.4	14	90	5	50	38	2	2	55	1.30
62156238--62156267	12	2.5	12	94	0	51	36	10	0	53	1.35
62158639--62158688	26	2.0	25	96	4	91	42	8	14	36	1.74
62162178--62162304	21	6.0	21	93	0	209	40	17	25	15	1.89
62165525--62165575	18	2.7	18	88	8	75	52	0	25	21	1.47
62167548--62167577	10	2.8	11	90	10	53	0	13	0	86	0.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226