genome.fa.s24.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  181  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55071264--55071361	33	2.9	33	84	7	108	30	10	22	36	1.87
55078528--55078724	41	4.8	41	92	5	317	28	20	22	27	1.99
55078939--55079036	33	2.9	33	84	7	108	30	10	22	36	1.87
55082755--55082905	46	3.3	46	91	1	243	29	21	15	33	1.94
55090955--55090996	22	2.0	21	85	4	57	42	11	0	45	1.41
55097291--55097341	26	2.0	26	84	0	66	31	7	9	50	1.64
55100144--55100210	33	2.0	33	100	0	134	11	23	28	35	1.91
55101632--55101690	29	2.0	29	96	0	109	37	8	0	54	1.31
55104416--55104491	38	2.0	38	100	0	152	52	13	13	21	1.73
55109143--55109219	22	3.5	23	85	8	99	35	9	0	55	1.31
55109153--55109217	10	6.1	10	72	19	51	35	6	0	58	1.23
55109156--55109219	22	2.9	22	92	0	110	34	7	0	57	1.27
55109360--55109415	30	1.9	30	88	3	87	32	12	1	53	1.49
55111384--55111429	19	2.4	19	85	7	58	21	21	13	43	1.86
55114286--55114365	14	6.0	14	68	20	55	76	0	22	1	0.86
55114286--55114362	13	5.7	13	77	22	54	77	0	20	1	0.83
55114289--55114351	24	2.7	24	83	14	78	76	0	22	1	0.88
55114298--55114362	10	6.7	10	77	10	64	78	0	20	1	0.83
55114306--55114362	30	1.9	29	86	10	80	77	0	21	1	0.86
55114286--55114362	23	3.4	23	69	16	63	77	0	20	1	0.83
55115698--55115852	45	3.5	45	84	5	224	26	25	23	24	2.00
55115684--55115856	89	1.9	89	91	0	283	27	25	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55116123--55116584	50	9.2	50	71	3	300	31	21	21	25	1.98
55116091--55116584	100	4.9	100	84	2	544	30	21	21	26	1.98
55116091--55116574	201	2.4	202	82	2	562	30	21	21	26	1.98
55116589--55116796	44	4.8	43	76	9	172	30	19	21	28	1.97
55116588--55116743	85	1.8	85	82	8	201	30	21	19	28	1.98
55116565--55116842	129	2.2	129	79	6	305	32	18	20	28	1.96
55116998--55117333	44	7.8	43	70	11	215	31	19	20	28	1.97
55117125--55117280	85	1.8	85	84	5	217	29	19	19	32	1.96
55116916--55117340	128	3.3	128	87	3	552	31	20	20	27	1.97
55119092--55119154	10	6.1	10	73	14	56	34	6	0	58	1.23
55119092--55119156	22	3.0	22	90	2	105	33	7	0	58	1.27
55119165--55119218	24	2.3	23	78	12	56	35	14	5	44	1.69
55119259--55119346	42	2.0	42	85	8	115	36	9	1	53	1.40
55121302--55121369	22	3.1	22	70	8	57	36	19	27	16	1.93
55123360--55123407	19	2.4	21	76	16	57	60	0	4	35	1.16
55123360--55123408	20	2.5	19	81	12	55	59	0	4	36	1.17
55126086--55126137	24	2.2	24	89	0	77	55	9	1	32	1.43
55128056--55128106	24	2.1	24	88	0	75	56	9	1	31	1.43
55128885--55128924	20	2.1	19	85	4	53	25	40	17	17	1.91
55129910--55129969	30	2.0	31	83	3	77	20	38	0	41	1.52
55130054--55130084	16	1.9	16	93	0	53	25	29	0	45	1.54
55130613--55130695	27	2.9	27	77	13	87	57	0	2	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55130609--55130696	9	9.4	9	71	11	52	60	0	2	37	1.10
55132838--55132911	33	2.2	34	90	4	116	44	9	10	35	1.72
55134761--55134785	5	5.0	5	100	0	50	40	0	0	60	0.97
55143850--55143883	15	2.3	15	100	0	68	47	17	17	17	1.84
55151652--55151685	5	6.8	5	100	0	68	20	0	0	79	0.73
55152708--55152748	20	2.2	19	86	8	57	36	2	0	60	1.10
55152706--55152788	20	4.1	20	66	18	55	34	2	0	62	1.08
55156539--55156682	43	3.3	43	73	3	119	38	19	18	24	1.93
55161535--55161886	176	2.0	176	94	0	623	31	19	13	36	1.89
55170124--55170165	4	10.5	4	80	10	50	73	7	0	19	1.05
55170144--55170168	12	2.1	12	100	0	50	76	8	0	16	1.02
55174019--55174084	13	5.1	13	72	7	53	33	4	24	37	1.76
55177721--55177768	23	2.2	22	85	7	62	56	4	2	37	1.30
55179362--55179401	13	3.2	13	86	13	57	52	0	0	47	1.00
55181988--55182057	22	3.0	24	64	19	58	34	17	27	21	1.95
55182204--55182316	57	2.0	56	89	1	172	38	9	22	29	1.86
55183076--55183972	448	2.0	445	98	0	1713	37	14	24	23	1.92
55188571--55188696	15	8.4	14	69	15	67	13	2	42	42	1.57
55188571--55188696	7	16.9	7	75	13	67	13	2	42	42	1.57
55188679--55188741	29	2.2	29	82	0	72	23	1	23	50	1.58
55188686--55188731	22	2.1	22	92	8	76	26	0	19	54	1.44
55188968--55189009	21	1.9	21	85	9	57	61	4	9	23	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55189176--55189591	115	3.6	113	77	8	374	24	13	19	42	1.87
55189177--55189591	114	3.6	116	78	7	317	24	13	20	42	1.88
55189756--55189797	15	2.7	16	81	7	50	16	45	2	35	1.61
55189809--55189846	8	4.6	8	90	3	58	31	50	0	18	1.47
55193698--55193739	17	2.6	16	88	3	57	52	4	7	35	1.50
55214008--55214200	18	10.7	18	84	2	226	36	21	21	20	1.95
55214008--55214200	54	3.6	54	84	2	253	36	21	21	20	1.95
55227839--55227904	25	2.6	25	80	0	78	30	15	7	46	1.73
55232354--55232429	26	2.9	26	82	3	82	42	11	15	30	1.83
55233594--55233640	24	1.9	25	82	4	60	42	4	25	27	1.73
55234716--55234844	50	2.5	53	75	8	129	41	14	12	31	1.83
55234844--55234909	34	1.9	35	84	6	91	48	10	13	27	1.75
55234822--55234912	33	2.8	34	79	12	102	46	10	13	29	1.77
55238720--55238759	14	2.9	13	85	10	53	50	10	0	40	1.36
55238685--55238751	34	1.9	35	87	3	100	52	8	2	35	1.48
55242557--55242607	18	2.8	18	81	0	57	25	17	29	27	1.98
55245564--55245609	24	1.9	24	90	0	74	50	8	4	36	1.53
55247498--55247549	24	2.2	24	89	0	77	53	7	3	34	1.48
55258332--55258370	20	2.0	20	90	10	62	15	17	5	61	1.51
55258617--55258715	50	2.0	50	88	4	146	18	33	24	24	1.97
55259720--55259887	74	2.3	75	82	6	191	45	9	3	41	1.54
55262643--55262687	16	2.9	15	86	6	54	8	0	6	84	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55264476--55264518	19	2.3	18	85	14	61	67	0	2	30	1.03
55266758--55266876	34	3.5	33	82	6	134	44	0	12	42	1.48
55266934--55267199	126	2.1	126	82	5	315	38	16	16	29	1.90
55268786--55268842	26	2.3	24	79	11	62	59	1	5	33	1.30
55268859--55268898	13	2.8	13	85	14	53	60	0	0	40	0.97
55271270--55271655	126	3.1	126	89	2	562	28	17	18	36	1.93
55271722--55271850	34	3.8	34	83	4	163	46	14	0	37	1.51
55277745--55277775	3	10.3	3	100	0	62	32	0	0	67	0.91
55278562--55278601	7	5.7	7	93	0	71	15	37	0	47	1.45
55281254--55281280	5	5.4	5	100	0	54	22	18	59	0	1.38
55281938--55282009	22	3.4	21	77	7	67	19	0	33	47	1.50
55281934--55282034	42	2.3	43	85	8	134	19	0	30	48	1.56
55281954--55282041	22	4.1	22	77	5	90	15	1	32	50	1.52
55281955--55282047	42	2.2	42	84	0	114	15	1	34	49	1.51
55282025--55282083	21	2.8	21	87	7	75	13	0	35	50	1.42
55281997--55282069	28	2.6	28	84	4	103	13	1	35	49	1.51
55282053--55282084	14	2.2	15	94	5	57	12	0	34	53	1.39
55282075--55282142	21	3.2	21	85	0	100	25	1	27	45	1.62
55282720--55282759	18	2.2	18	90	0	62	42	7	30	20	1.79
55283410--55283438	7	4.1	7	100	0	58	58	13	0	27	1.36
55284647--55284690	11	3.8	12	80	19	58	43	0	31	25	1.55
55285900--55285988	40	2.2	40	87	0	124	32	21	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55286362--55286410	7	7.0	7	80	0	53	18	2	36	42	1.62
55286356--55286509	14	10.8	14	68	14	73	23	1	29	44	1.64
55286464--55286545	43	1.9	43	89	0	128	17	3	35	43	1.66
55288475--55288691	115	1.9	115	86	1	310	31	17	22	28	1.97
55288700--55288996	113	2.6	114	78	9	320	29	19	23	27	1.98
55288918--55289080	84	1.9	84	85	4	222	31	23	20	25	1.98
55289427--55289490	14	4.5	14	72	12	51	15	0	37	46	1.46
55290431--55290498	23	3.0	23	75	16	77	19	41	0	39	1.51
55290433--55290507	25	3.2	23	76	14	82	18	44	0	37	1.50
55290481--55290523	16	2.7	17	82	13	56	16	51	0	32	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226