genome.fa.s24.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  172  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52884780--52884837	22	2.7	21	84	7	80	32	3	18	44	1.67
52884790--52884834	23	2.0	22	91	4	72	31	4	17	46	1.68
52888636--52888839	43	4.7	43	92	2	329	27	31	18	22	1.97
52889038--52889097	18	3.4	18	64	13	52	40	10	6	43	1.64
52894771--52894795	13	1.9	13	100	0	50	32	8	4	56	1.47
52895258--52895321	21	3.0	21	81	6	67	34	40	0	25	1.56
52895403--52895432	7	4.3	7	100	0	60	26	60	0	13	1.34
52896038--52896322	41	7.0	41	88	0	408	29	28	22	19	1.98
52896363--52896491	40	3.3	39	83	5	152	20	21	23	34	1.97
52897206--52897248	20	2.2	20	86	0	59	44	2	0	53	1.13
52897476--52897514	18	2.2	18	86	4	53	38	10	12	38	1.78
52897316--52897763	171	2.6	170	92	2	729	40	14	12	31	1.84
52897642--52897685	18	2.5	18	81	3	54	40	6	13	38	1.71
52900788--52900984	98	2.0	98	93	0	340	37	23	9	28	1.87
52902415--52902512	21	4.7	21	74	18	78	39	17	6	36	1.74
52902415--52902472	22	2.6	22	84	7	73	43	17	3	36	1.66
52902451--52902544	19	4.8	19	87	5	134	35	18	10	36	1.85
52902516--52902611	47	2.0	47	100	0	192	34	20	8	36	1.83
52902820--52903604	132	5.9	132	93	0	1293	30	23	18	27	1.98
52903058--52903516	44	10.4	44	64	18	159	29	23	17	29	1.97
52906142--52906195	27	2.0	27	100	0	108	25	11	14	48	1.77
52908846--52909042	98	2.0	98	97	0	376	37	24	9	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52909897--52909957	25	2.5	25	82	12	74	59	6	1	32	1.33
52910473--52910570	21	4.7	21	74	18	78	39	17	6	36	1.74
52910473--52910530	22	2.6	22	84	7	73	43	17	3	36	1.66
52910509--52910602	19	4.8	19	87	5	134	36	17	9	37	1.82
52915617--52916367	44	16.7	44	69	10	320	28	21	18	31	1.97
52915831--52916315	182	2.7	182	81	4	534	28	22	17	30	1.97
52924369--52924412	18	2.5	18	81	3	54	40	9	13	36	1.76
52924214--52924831	171	3.6	171	93	0	1015	41	14	12	31	1.84
52924540--52924583	18	2.5	18	81	3	54	40	9	13	36	1.76
52924716--52924754	18	2.2	18	86	4	53	38	10	12	38	1.78
52933643--52933695	28	1.9	28	88	3	81	24	16	7	50	1.71
52933644--52933709	28	2.4	28	82	7	73	27	18	7	46	1.75
52934330--52934406	22	3.4	22	67	19	68	36	25	2	35	1.70
52934317--52934411	46	2.1	46	100	0	190	41	23	2	33	1.66
52938902--52938978	22	3.4	22	67	19	68	36	25	2	35	1.70
52938889--52938983	46	2.1	46	100	0	190	41	23	2	33	1.66
52941265--52941407	41	3.5	40	86	5	173	27	23	16	32	1.96
52943185--52943224	18	2.2	18	90	0	62	52	15	12	20	1.74
52943185--52943216	6	5.3	6	100	0	64	50	15	15	18	1.79
52943574--52943610	18	2.1	18	94	0	65	24	13	21	40	1.89
52944879--52944920	19	2.3	18	84	12	50	38	28	19	14	1.90
52947149--52947201	23	2.2	24	81	18	67	18	5	45	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52949395--52949423	14	2.0	15	93	6	51	17	0	0	82	0.66
52965943--52966123	66	2.7	66	82	4	213	34	25	11	28	1.90
52966934--52966999	25	2.6	25	97	0	123	40	9	13	36	1.76
52971023--52971064	21	2.0	22	85	4	59	21	40	14	23	1.90
52978652--52978773	58	2.1	58	92	0	199	40	21	9	28	1.85
52981309--52981344	6	6.3	6	87	12	58	13	36	30	19	1.91
52981314--52981344	16	1.9	16	100	0	62	12	35	32	19	1.90
52981973--52981997	8	3.1	8	100	0	50	24	0	0	76	0.80
53002289--53002348	25	2.3	26	83	8	70	60	1	5	33	1.29
53002492--53002533	14	3.1	14	86	6	61	78	4	0	16	0.91
53005049--53005093	18	2.5	18	79	13	56	20	28	2	48	1.61
53005752--53005791	3	13.3	3	94	0	71	32	2	0	65	1.06
53009689--53010239	9	61.7	9	80	6	613	34	1	15	48	1.55
53009705--53010246	90	6.0	90	93	2	842	34	1	15	48	1.55
53014249--53014283	14	2.4	15	90	4	54	42	37	0	20	1.52
53015057--53015141	21	4.0	20	72	11	53	45	31	1	21	1.59
53015065--53015144	14	5.6	14	70	14	56	47	31	0	21	1.51
53015401--53015852	189	2.4	188	78	5	430	26	23	18	31	1.97
53015773--53016054	112	2.5	112	79	5	327	25	24	19	31	1.98
53018359--53018434	40	1.9	40	86	5	109	27	25	30	17	1.97
53018514--53018792	41	6.8	41	77	6	244	16	23	25	34	1.96
53018513--53018775	123	2.1	123	81	6	302	15	23	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53019286--53019323	15	2.5	15	86	0	58	21	0	42	36	1.53
53019259--53019326	15	4.9	14	74	13	52	23	0	35	41	1.55
53020281--53020305	13	1.9	13	100	0	50	24	0	52	24	1.48
53020259--53020343	28	2.9	29	78	16	86	24	1	44	29	1.61
53020268--53020336	15	4.7	14	76	20	54	26	1	43	28	1.63
53020237--53020359	14	8.5	15	69	12	78	23	0	42	33	1.60
53023199--53023277	22	3.8	22	71	21	64	46	12	2	37	1.55
53023202--53023290	18	4.8	18	71	14	74	47	12	2	38	1.54
53023317--53023540	121	1.9	121	91	1	369	39	8	7	44	1.62
53023512--53023567	27	2.1	27	100	0	112	41	7	3	48	1.48
53023391--53024186	148	5.2	148	85	11	1118	40	8	6	44	1.59
53023331--53023577	121	2.0	120	80	10	272	40	8	5	45	1.57
53023660--53023715	27	2.1	27	100	0	112	41	7	3	48	1.48
53023664--53024038	175	2.1	175	99	0	741	40	8	5	45	1.58
53023812--53023890	27	2.9	27	98	0	149	41	8	2	46	1.48
53023983--53024038	27	2.1	27	100	0	112	41	7	3	48	1.48
53023516--53024265	323	2.3	323	98	0	1450	40	9	5	44	1.60
53023721--53024250	175	3.0	174	84	9	590	40	9	6	44	1.62
53024135--53024213	27	2.9	27	98	0	149	41	8	2	46	1.48
53024270--53024312	16	2.7	16	92	0	68	51	18	0	30	1.47
53024361--53024670	25	12.4	25	77	2	275	45	18	2	33	1.62
53024399--53024803	75	5.5	75	79	9	424	45	18	2	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53024399--53024860	50	9.2	50	70	12	259	45	19	2	33	1.63
53024356--53024861	9	60.3	9	66	16	239	45	19	2	32	1.64
53024481--53024664	99	1.9	99	91	0	305	45	18	1	34	1.59
53024648--53024781	25	5.3	25	74	7	117	44	21	2	31	1.64
53024359--53024722	174	2.1	173	82	6	439	44	19	2	33	1.64
53024538--53024859	118	2.8	118	83	5	389	45	20	1	31	1.62
53024326--53024861	292	1.8	287	87	7	803	45	19	2	32	1.63
53030244--53030413	66	2.6	66	86	1	225	41	18	27	13	1.88
53030385--53030428	21	2.1	21	86	0	61	34	18	45	2	1.62
53030404--53030496	21	4.4	21	81	0	105	35	16	43	5	1.71
53030610--53030840	43	5.4	42	75	9	171	25	23	26	25	2.00
53033381--53033756	123	3.0	124	92	1	628	29	16	22	31	1.96
53036879--53036946	17	3.8	17	71	16	57	48	1	5	44	1.36
53036764--53037008	115	2.1	115	92	3	402	45	6	8	39	1.62
53037065--53037986	45	20.4	43	77	15	511	26	0	24	48	1.54
53037065--53038030	68	14.2	67	77	14	657	26	0	24	48	1.54
53037002--53038030	23	45.1	23	76	14	835	26	0	24	48	1.54
53037975--53038042	23	3.0	23	70	21	63	29	0	22	48	1.51
53038076--53038123	25	1.9	25	100	0	96	39	14	0	45	1.45
53039241--53039265	7	3.6	7	100	0	50	60	12	0	28	1.32
53039413--53039450	20	1.9	20	84	10	51	55	7	2	34	1.43
53040345--53040386	11	3.7	11	84	6	57	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53040384--53040426	22	2.0	22	86	4	61	48	2	25	23	1.62
53044879--53044997	23	5.2	23	81	0	148	30	25	20	24	1.99
53044886--53044997	46	2.4	46	87	0	170	30	25	20	24	1.99
53044879--53045014	69	2.0	68	79	5	148	33	25	18	23	1.97
53046873--53046910	11	3.5	11	92	0	67	42	2	7	47	1.46
53050341--53050388	18	2.7	18	93	0	78	35	10	12	41	1.77
53050813--53050984	72	2.4	72	87	4	260	27	5	13	53	1.61
53065754--53065813	30	2.0	31	86	3	86	40	0	40	20	1.52
53066027--53066072	9	5.1	9	89	0	74	28	10	15	45	1.79
53066027--53066072	18	2.6	18	100	0	92	28	10	15	45	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226