genome.fa.s24.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  130  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40353119--40353353	95	2.4	95	86	8	332	23	12	0	62	1.33
40353128--40353407	78	3.8	77	77	13	309	23	13	1	61	1.38
40356751--40356960	113	1.9	110	83	4	269	31	22	19	26	1.97
40358692--40358966	41	6.7	41	89	3	394	17	21	29	32	1.96
40358692--40358966	83	3.4	82	89	5	389	17	21	29	32	1.96
40358692--40358966	124	2.2	123	87	3	401	17	21	29	32	1.96
40360816--40360859	22	2.0	22	82	8	54	27	40	4	27	1.75
40361056--40361081	9	2.9	9	100	0	52	34	11	30	23	1.90
40361169--40361214	19	2.4	19	85	3	56	21	0	6	71	1.08
40363505--40363667	43	3.8	43	89	1	229	22	17	30	29	1.96
40368138--40368201	26	2.5	26	97	0	119	20	29	26	23	1.99
40371224--40371252	14	2.1	14	100	0	58	51	6	0	41	1.28
40378361--40378385	11	2.3	11	100	0	50	8	0	8	84	0.79
40379138--40379283	50	2.9	50	84	0	184	27	21	28	21	1.99
40379534--40379583	20	2.5	20	81	12	66	58	6	24	12	1.56
40397843--40397889	9	5.2	9	80	10	60	31	2	0	65	1.04
40397831--40397872	19	2.3	18	87	4	57	33	0	2	64	1.07
40397843--40397931	10	9.1	10	70	15	62	33	3	1	61	1.20
40397847--40397901	27	2.0	28	85	3	76	29	3	0	67	1.08
40408349--40408401	21	2.5	21	87	0	70	45	5	7	41	1.56
40413177--40413775	47	12.6	47	92	2	973	33	8	28	29	1.86
40413177--40413775	96	6.3	96	95	1	1012	33	8	28	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40413177--40413775	143	4.2	143	92	2	981	33	8	28	29	1.86
40413894--40413995	37	2.8	37	93	0	168	25	18	29	26	1.98
40418869--40418895	13	2.1	13	100	0	54	22	7	22	48	1.75
40422715--40422744	15	2.0	15	100	0	60	33	13	13	40	1.83
40425797--40425837	21	1.9	21	85	5	55	60	0	9	29	1.28
40426556--40426608	25	2.2	24	89	3	79	22	28	16	32	1.96
40434845--40434909	22	3.0	21	80	10	78	80	3	0	16	0.85
40442868--40443001	70	1.9	69	88	7	200	38	26	17	18	1.92
40442833--40443001	35	4.9	35	83	2	180	38	26	17	17	1.92
40446581--40446623	22	2.0	22	85	0	59	32	9	9	48	1.67
40452608--40452750	71	2.0	71	100	0	286	30	16	16	36	1.92
40456568--40456613	19	2.3	20	89	10	69	63	0	2	34	1.07
40459123--40459260	50	2.8	49	72	7	118	30	21	24	23	1.99
40462039--40462110	36	2.0	36	94	5	128	38	27	19	13	1.90
40463907--40463947	13	3.1	14	86	6	50	21	7	24	46	1.77
40464004--40464055	25	2.0	26	88	3	79	25	1	21	51	1.57
40466210--40466257	24	2.0	24	87	4	69	27	8	14	50	1.71
40467317--40467349	16	2.1	16	100	0	66	45	24	0	30	1.53
40467336--40467611	103	2.7	103	98	0	543	47	14	0	38	1.44
40467513--40467634	22	5.6	22	70	19	78	48	13	0	37	1.43
40467409--40467992	190	3.1	190	95	2	1075	47	14	0	37	1.44
40467302--40468045	293	2.6	292	86	8	1019	47	14	0	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40467599--40468045	103	4.5	103	87	10	689	47	14	0	37	1.45
40473616--40473661	21	2.2	21	88	0	65	39	19	39	2	1.64
40473567--40473733	87	1.9	87	90	4	266	41	18	28	11	1.85
40473730--40473770	21	2.0	21	85	9	57	36	14	39	9	1.79
40474077--40474371	43	7.0	42	86	2	371	23	20	25	31	1.98
40479597--40479638	10	3.7	12	81	18	54	69	2	16	11	1.29
40479681--40479759	12	6.6	12	71	16	56	62	1	24	12	1.38
40479704--40479737	15	2.3	15	89	0	50	67	0	29	2	1.05
40479691--40479743	18	2.8	20	68	26	53	64	0	24	11	1.26
40485804--40485847	22	2.0	21	83	12	54	40	0	0	59	0.98
40493032--40493093	26	2.3	26	83	2	70	48	22	11	17	1.79
40497442--40497547	48	2.3	46	85	3	140	44	26	12	16	1.83
40499100--40499203	53	2.0	53	94	0	181	27	19	18	34	1.95
40499290--40499356	20	3.3	19	69	8	53	19	29	14	35	1.92
40499307--40499370	21	3.1	21	67	13	60	26	28	12	32	1.93
40499296--40499396	41	2.5	41	83	6	132	22	27	14	34	1.94
40499397--40499489	41	2.3	41	84	3	116	21	30	16	32	1.95
40506249--40506367	41	2.9	41	83	3	134	37	15	23	22	1.93
40506250--40506372	40	3.1	39	81	5	129	36	16	25	21	1.94
40509938--40509982	14	2.9	16	87	9	58	42	8	0	48	1.34
40509935--40509982	16	3.0	16	82	11	55	41	8	0	50	1.33
40512720--40513016	50	5.8	50	84	3	292	22	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40518994--40519129	41	3.3	41	95	0	254	29	15	11	44	1.81
40519989--40520017	14	2.0	15	93	6	51	51	13	6	27	1.66
40529275--40529366	48	1.9	48	84	4	123	25	33	21	19	1.97
40536866--40536918	23	2.4	22	76	20	56	9	18	1	69	1.25
40543835--40543896	24	2.4	26	89	7	92	43	11	0	45	1.40
40544027--40544156	4	32.0	4	69	21	51	66	0	32	0	0.97
40544035--40544089	18	2.9	18	74	15	58	61	1	36	0	1.06
40544031--40544156	22	6.4	18	70	15	74	66	0	32	0	0.97
40544028--40544184	37	4.2	37	76	20	148	68	0	31	0	0.95
40544017--40544073	26	2.1	27	90	6	89	61	0	38	0	0.96
40544028--40544217	36	5.3	35	72	18	99	67	1	31	0	0.97
40544054--40544217	78	2.2	78	89	8	250	68	1	29	0	0.97
40544941--40544996	27	2.1	27	96	0	103	42	14	33	8	1.77
40548541--40548577	18	2.1	18	94	0	65	10	45	8	35	1.69
40549060--40549096	18	2.1	18	94	0	65	51	13	5	29	1.63
40550679--40550722	3	14.7	3	100	0	88	68	31	0	0	0.90
40551526--40551571	23	2.0	23	91	0	74	28	10	32	28	1.91
40551767--40551830	28	2.4	28	94	5	114	48	0	10	40	1.38
40552114--40552158	21	2.3	18	85	11	54	62	4	2	31	1.27
40552600--40552666	8	8.1	8	75	9	55	31	0	1	67	1.00
40552614--40552675	29	2.2	29	86	8	85	35	0	1	62	1.05
40552651--40552696	21	2.2	21	88	3	67	34	0	2	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40566668--40566718	25	2.0	26	84	3	68	39	11	9	39	1.75
40570593--40570645	21	2.6	21	85	5	65	43	18	22	15	1.87
40572343--40572400	29	2.0	29	96	0	107	46	8	17	27	1.77
40572488--40572553	10	6.2	11	73	16	50	57	4	3	34	1.34
40572577--40572626	24	2.2	23	89	7	75	56	0	6	38	1.24
40574133--40574809	50	13.5	50	70	6	415	24	20	22	33	1.97
40574133--40574809	100	6.8	100	85	3	853	24	20	22	33	1.97
40576100--40576129	13	2.3	13	94	0	51	10	20	0	70	1.16
40578971--40579000	15	2.0	15	93	0	51	50	6	20	23	1.71
40581481--40581539	24	2.6	23	86	7	77	55	1	6	35	1.36
40587062--40587087	5	5.2	5	100	0	52	42	19	19	19	1.90
40587842--40587901	30	2.0	31	86	3	86	40	0	40	20	1.52
40588115--40588151	9	4.1	9	92	0	65	29	10	13	45	1.77
40588542--40588577	18	2.1	18	89	5	56	33	25	0	41	1.55
40589219--40589280	28	2.1	30	91	5	101	51	6	1	40	1.37
40592848--40592898	10	5.2	10	77	13	61	47	1	0	50	1.12
40592848--40592897	9	5.2	9	79	11	55	46	2	0	52	1.12
40593229--40593258	11	2.7	11	94	0	51	46	0	0	53	1.00
40602113--40602145	17	2.0	16	94	5	57	60	0	0	39	0.97
40602110--40602152	22	2.0	22	90	0	68	62	0	0	37	0.95
40604086--40604181	33	2.9	33	82	3	113	13	18	20	46	1.83
40608932--40609044	36	3.2	36	69	14	108	22	17	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40608918--40609078	70	2.3	71	86	4	229	21	18	24	35	1.95
40626207--40626278	36	2.0	36	88	0	108	33	5	19	41	1.75
40626345--40626454	34	3.1	35	73	10	116	21	20	25	32	1.97
40626338--40626616	70	4.0	70	76	7	255	23	21	22	32	1.98
40632664--40632848	79	2.3	81	84	7	236	24	22	27	25	2.00
40632665--40632848	40	4.6	40	83	9	216	24	22	27	25	2.00
40632665--40632881	79	2.7	79	81	7	201	25	22	27	24	2.00
40647100--40647218	40	3.0	40	81	4	150	26	29	14	29	1.95
40652536--40652576	6	6.8	6	94	0	73	65	0	17	17	1.27
40652795--40652820	5	5.2	5	100	0	52	42	19	19	19	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226