genome.fa.s24.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  163  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50393198--50393851	88	7.4	88	85	1	801	21	24	26	27	1.99
50393221--50393858	351	1.8	352	87	2	969	22	24	25	27	2.00
50414064--50414099	18	1.9	18	88	5	54	22	16	11	50	1.77
50420423--50420466	19	2.2	21	88	11	67	54	4	0	40	1.21
50420428--50420468	18	2.3	17	84	12	55	48	4	0	46	1.23
50423690--50423797	57	1.9	57	98	0	207	28	17	29	24	1.97
50429319--50429385	29	2.3	30	82	7	84	44	17	7	29	1.76
50429280--50429385	29	3.6	28	72	13	81	48	17	8	25	1.76
50431996--50432036	21	2.0	21	90	0	64	19	29	21	29	1.98
50440627--50440654	8	3.5	8	100	0	56	21	0	0	78	0.75
50440624--50440692	21	3.5	20	76	16	65	27	1	1	69	1.05
50440851--50440881	16	1.9	16	100	0	62	38	29	0	32	1.57
50443746--50443782	14	2.6	14	95	0	65	45	2	5	45	1.40
50445809--50445861	21	2.6	22	80	14	69	67	0	15	16	1.23
50447251--50447358	39	2.7	40	76	13	116	37	25	21	16	1.94
50447424--50447576	41	3.7	41	84	6	193	24	20	23	31	1.98
50447977--50448009	14	2.3	15	89	5	50	27	0	36	36	1.57
50448737--50448932	108	1.8	109	89	3	315	38	12	13	35	1.83
50448801--50449098	149	2.0	149	86	3	413	39	13	13	33	1.83
50453683--50453867	43	4.3	43	86	2	246	20	15	34	30	1.93
50453962--50454003	22	1.9	22	95	0	75	40	28	21	9	1.84
50454619--50454661	17	2.6	16	85	3	59	55	2	0	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50467443--50467499	22	2.8	20	71	21	55	71	8	3	15	1.24
50467749--50467783	16	2.2	16	89	0	52	57	17	5	20	1.60
50472460--50472505	19	2.3	20	75	17	51	13	2	4	80	0.95
50475885--50476015	63	2.1	61	85	12	171	43	3	6	46	1.45
50475891--50476015	59	2.1	55	81	14	135	44	2	7	45	1.44
50479898--50479949	23	2.3	23	83	12	63	69	0	1	28	0.99
50481801--50481831	16	1.9	16	93	0	53	54	9	0	35	1.33
50491436--50491474	20	2.0	20	85	9	55	43	7	15	33	1.75
50508935--50508967	11	2.9	12	86	13	52	33	0	0	66	0.92
50521281--50521330	26	1.9	26	95	0	91	30	32	24	14	1.94
50521248--50521511	104	2.6	102	89	4	397	29	29	20	20	1.97
50521839--50521903	30	2.2	29	81	8	76	30	27	6	35	1.81
50521846--50521903	30	1.9	30	85	0	80	31	24	6	37	1.82
50528297--50528386	43	2.1	43	91	0	144	34	25	14	25	1.94
50528305--50528402	43	2.3	43	87	1	135	36	23	13	26	1.92
50529040--50529173	43	3.1	43	88	2	189	32	26	17	23	1.97
50532379--50532423	20	2.1	22	84	12	58	13	11	8	66	1.44
50536728--50536798	13	5.8	12	68	25	51	45	5	14	35	1.68
50536754--50536812	21	2.8	21	97	0	109	47	5	11	35	1.62
50536754--50536833	21	3.8	21	86	6	74	47	5	10	37	1.59
50537226--50537266	19	2.2	19	95	0	73	14	2	4	78	1.03
50537641--50537718	7	11.0	7	73	13	61	39	44	0	15	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50537645--50537696	14	3.6	15	84	7	72	34	51	0	13	1.41
50537685--50537728	15	3.0	15	83	6	63	47	34	0	18	1.49
50537747--50537788	14	3.0	14	80	13	59	42	33	0	23	1.55
50537936--50538026	7	12.9	7	76	11	78	42	40	0	16	1.48
50537929--50538066	14	9.7	14	71	14	77	45	34	0	19	1.56
50537489--50538065	294	2.0	294	95	1	1032	44	24	1	28	1.64
50538455--50538575	41	3.0	40	80	6	129	29	22	19	28	1.98
50539717--50539747	14	2.2	14	94	0	53	22	0	22	54	1.44
50540599--50540647	23	2.1	23	84	3	62	55	6	10	28	1.57
50542649--50542679	6	5.2	6	100	0	62	0	16	0	83	0.64
50545529--50545618	43	2.1	43	85	6	121	34	8	10	46	1.69
50545964--50546045	43	1.9	42	82	2	101	20	9	28	41	1.84
50546044--50546088	16	2.8	16	89	0	63	35	26	24	13	1.92
50547079--50547150	36	2.0	36	81	5	83	63	1	2	31	1.17
50550161--50550222	3	20.7	3	83	6	81	62	1	4	30	1.25
50551781--50552031	43	5.4	42	68	22	155	29	23	17	28	1.97
50551779--50552051	95	2.9	94	95	1	501	30	23	18	28	1.98
50552209--50552352	44	3.3	42	70	10	110	26	22	25	25	2.00
50552491--50552624	44	3.1	43	63	19	105	26	23	23	26	2.00
50552371--50552758	88	4.5	88	88	1	527	24	24	22	27	2.00
50554853--50554882	9	3.3	9	100	0	60	10	0	10	80	0.92
50557408--50557455	19	2.6	19	80	9	55	41	12	18	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50559940--50560007	3	22.7	3	85	5	93	63	1	4	30	1.23
50563520--50563551	3	10.7	3	100	0	64	31	0	0	68	0.90
50563668--50563718	19	2.7	20	78	9	61	33	0	5	60	1.21
50570767--50570811	21	2.2	21	84	4	56	17	40	17	24	1.91
50571896--50571927	9	3.6	9	91	0	55	46	15	9	28	1.77
50571895--50571935	18	2.3	18	82	0	55	46	19	7	26	1.76
50571974--50572064	21	4.2	20	63	26	51	28	3	5	62	1.33
50582223--50582253	16	1.9	16	100	0	62	32	12	25	29	1.93
50588650--50589052	4	100.8	4	85	1	369	18	4	30	46	1.69
50591448--50591670	88	2.6	84	81	8	247	36	19	11	32	1.88
50591795--50591870	29	2.6	29	85	2	98	63	0	3	32	1.13
50598065--50598194	9	13.9	9	72	19	79	25	2	14	57	1.49
50598063--50598273	30	7.4	28	76	16	202	26	2	13	57	1.50
50598074--50598266	16	12.2	16	66	21	52	26	3	12	57	1.50
50598118--50598274	15	10.5	15	65	23	64	26	3	12	57	1.51
50598063--50598274	60	3.7	60	85	6	278	26	2	13	57	1.50
50602263--50602430	27	6.3	27	84	7	209	18	17	20	43	1.88
50602263--50602408	51	2.8	53	89	6	217	19	18	20	41	1.90
50602284--50602431	78	1.9	78	91	0	242	18	17	20	43	1.88
50604744--50604899	9	15.7	9	69	18	87	28	2	10	57	1.46
50604738--50604899	21	8.0	21	68	13	97	29	2	11	57	1.46
50604744--50604899	30	5.2	30	81	6	199	28	2	10	57	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50604744--50604899	60	2.6	60	88	0	222	28	2	10	57	1.46
50605259--50605291	17	1.9	17	100	0	66	30	9	18	42	1.81
50607201--50607346	70	2.1	69	94	1	256	40	13	6	39	1.72
50608493--50608645	61	2.5	61	81	7	168	41	3	11	43	1.58
50613956--50614012	22	2.6	21	78	13	53	43	3	1	50	1.29
50625593--50625649	30	1.9	30	85	7	80	33	8	14	43	1.76
50636397--50636453	27	2.1	27	100	0	114	22	17	17	42	1.89
50639241--50639290	20	2.4	22	80	6	59	54	16	2	28	1.53
50642535--50642584	20	2.4	22	80	6	59	54	16	2	28	1.53
50646165--50646198	11	3.2	11	91	4	52	8	14	2	73	1.19
50646409--50646446	16	2.2	18	86	9	53	23	0	5	71	1.07
50646920--50646971	22	2.3	23	83	3	61	32	15	1	50	1.55
50646930--50646977	22	2.2	22	85	7	62	31	14	2	52	1.54
50647076--50647135	27	2.2	27	79	5	68	46	5	8	40	1.56
50647804--50647857	28	1.9	28	85	7	74	35	0	3	61	1.14
50660811--50660857	16	3.1	16	87	6	71	55	0	2	42	1.12
50665205--50665297	41	2.3	41	84	3	116	23	26	18	31	1.97
50665273--50665322	25	2.0	25	96	0	91	22	32	20	26	1.98
50665228--50665363	66	2.1	66	91	2	220	22	28	19	28	1.98
50665291--50665491	41	4.9	41	90	0	312	21	25	21	30	1.99
50665198--50665401	107	1.9	107	87	0	300	23	26	20	30	1.98
50665291--50665514	123	1.8	122	87	3	333	24	25	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50672277--50672457	41	4.4	41	85	1	211	22	25	20	31	1.98
50674844--50674933	41	2.2	41	78	4	92	31	20	22	26	1.98
50680483--50680511	7	4.1	7	100	0	58	27	27	13	31	1.94
50683776--50683822	21	2.2	21	92	0	76	31	4	27	36	1.76
50687469--50687504	17	2.1	18	89	5	56	63	0	2	33	1.08
50689017--50689059	21	2.0	21	90	0	68	23	11	20	44	1.84
50691243--50691282	11	3.5	11	83	12	53	42	0	0	57	0.98
50691243--50691276	13	2.8	13	91	8	54	41	0	0	58	0.98
50692610--50692731	9	11.9	9	68	22	55	40	1	1	55	1.19
50692595--50692739	31	4.5	34	79	11	155	40	2	1	55	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226