genome.fa.s24.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  135  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41984898--41985258	40	9.1	39	90	4	517	24	21	28	25	1.99
41984898--41985258	120	3.0	120	93	1	582	24	21	28	25	1.99
41986512--41986684	82	2.1	83	94	3	303	37	9	26	26	1.86
41987948--41988711	47	16.1	47	88	4	1040	32	10	29	27	1.90
41987948--41988711	141	5.4	141	91	3	1187	32	10	29	27	1.90
41991157--41991231	38	2.0	38	86	5	107	30	18	26	24	1.98
41991284--41991635	40	8.9	40	92	2	559	24	21	28	25	1.99
41992878--41993055	85	2.1	84	97	1	338	37	8	27	26	1.85
41994317--41994722	47	8.6	48	88	4	553	33	8	29	27	1.87
41996857--41996921	33	1.9	34	87	3	96	43	13	9	33	1.76
42001065--42001109	18	2.4	18	81	7	54	75	2	15	6	1.11
42002725--42002799	33	2.2	34	88	2	116	37	6	12	44	1.68
42004565--42004603	18	2.2	17	82	13	51	5	17	2	74	1.12
42005901--42005994	39	2.4	39	92	3	154	52	13	14	19	1.75
42010592--42010666	36	2.1	35	83	11	91	64	4	25	6	1.36
42011085--42011114	16	1.9	15	93	6	51	20	3	33	43	1.68
42031035--42031101	29	2.4	28	82	9	84	68	0	17	13	1.21
42031035--42031077	12	3.3	12	79	17	50	69	0	18	11	1.17
42031057--42031094	18	2.2	17	90	4	58	63	0	15	21	1.31
42031062--42031117	17	3.2	17	82	2	58	66	0	17	16	1.26
42043312--42043892	304	1.9	304	95	0	1054	34	22	10	33	1.87
42058651--42059435	395	2.0	395	87	2	1130	36	20	20	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42065724--42065757	17	2.0	17	88	11	52	29	14	23	32	1.94
42068808--42068885	38	2.1	38	97	0	147	39	6	26	26	1.80
42075439--42075616	27	6.6	27	83	3	196	26	14	29	29	1.95
42075439--42075616	54	3.3	55	84	4	236	26	14	29	29	1.95
42083703--42083880	27	6.6	27	83	3	196	26	14	29	29	1.95
42083703--42083880	54	3.3	55	84	4	236	26	14	29	29	1.95
42085992--42086016	11	2.3	11	100	0	50	48	20	16	16	1.82
42091546--42091577	15	2.1	16	94	5	57	71	0	21	6	1.07
42091604--42091643	21	1.9	21	84	0	53	52	5	25	17	1.64
42096329--42096480	37	3.9	37	78	13	155	26	21	15	36	1.93
42096397--42096612	46	4.6	46	85	7	272	29	22	13	35	1.92
42096486--42096598	52	2.2	51	87	3	154	29	23	11	36	1.90
42102287--42102330	20	2.2	20	87	0	61	27	18	15	38	1.91
42106896--42106939	20	2.2	20	95	0	79	25	22	15	36	1.94
42107107--42107137	5	6.2	5	100	0	62	38	0	0	61	0.96
42116485--42116559	33	2.2	34	90	2	116	42	12	8	37	1.71
42118305--42118361	18	2.9	20	79	10	64	5	21	5	68	1.29
42122449--42122506	30	1.9	30	86	6	82	41	8	20	29	1.82
42122842--42123122	97	2.9	100	79	7	292	28	15	25	29	1.96
42122997--42123127	49	2.7	49	92	2	219	28	17	25	29	1.97
42130345--42130683	51	6.7	51	74	9	234	29	15	25	29	1.96
42130345--42130578	102	2.3	101	86	4	319	28	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42130395--42130628	102	2.3	101	83	3	283	29	16	25	29	1.96
42130548--42130670	50	2.5	50	87	1	167	32	15	22	29	1.95
42139756--42139843	33	2.6	34	81	13	103	38	4	13	43	1.65
42141679--42141720	10	3.7	12	81	18	54	71	0	14	14	1.15
42141753--42141824	33	2.2	33	80	9	85	52	11	25	11	1.69
42151546--42151596	25	2.1	24	85	10	68	50	11	17	19	1.76
42152421--42152495	33	2.2	34	88	2	107	44	12	6	37	1.68
42154251--42154289	18	2.2	17	82	13	51	5	17	2	74	1.12
42158468--42158965	47	10.6	47	95	0	852	33	7	28	29	1.85
42158672--42158747	22	3.3	22	66	16	64	32	10	30	26	1.90
42166534--42166566	15	2.1	16	88	5	50	60	0	30	9	1.27
42169374--42169426	23	2.3	23	83	9	63	45	11	13	30	1.78
42172223--42172254	15	2.1	15	94	0	55	6	31	0	62	1.20
42174905--42175228	49	6.4	49	73	14	246	23	23	20	32	1.98
42174938--42175332	50	7.8	50	75	7	233	23	26	20	30	1.98
42182188--42182216	9	3.2	9	100	0	58	79	0	10	10	0.94
42182605--42182744	50	2.8	50	83	0	172	22	27	21	27	1.99
42186042--42186069	14	2.0	14	100	0	56	35	21	14	28	1.92
42191328--42191436	45	2.4	45	81	6	123	53	11	5	29	1.60
42192859--42192896	18	2.1	18	90	0	58	5	21	0	73	1.02
42198821--42198851	15	2.1	15	100	0	62	48	6	0	45	1.28
42207356--42207407	20	2.7	20	84	3	70	5	15	3	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42207355--42207407	19	2.6	21	80	14	67	5	15	3	75	1.13
42207356--42207416	18	3.2	18	79	11	52	6	16	3	73	1.17
42218353--42218406	25	2.2	25	80	12	58	38	3	1	55	1.28
42221584--42221698	60	1.9	60	100	0	230	41	13	13	31	1.83
42228887--42228936	21	2.4	21	96	0	91	30	6	38	26	1.80
42233709--42233809	40	2.6	40	82	3	125	38	4	6	49	1.51
42237836--42237913	37	2.1	38	83	7	97	26	26	17	28	1.98
42238030--42238389	47	7.6	47	92	2	585	28	30	8	31	1.87
42241942--42242096	40	3.9	40	82	3	152	25	27	23	23	2.00
42242404--42242482	29	2.7	29	86	5	106	27	32	15	24	1.95
42244386--42244464	37	2.1	37	88	4	115	25	30	18	25	1.98
42254737--42254813	20	3.8	20	91	0	109	23	28	0	48	1.51
42254751--42254783	15	2.1	16	88	5	50	21	27	0	51	1.48
42261828--42261962	65	2.1	65	88	0	207	29	14	25	30	1.95
42262584--42262647	13	4.9	13	84	0	83	35	21	7	34	1.83
42264769--42264867	45	2.2	45	83	3	128	41	17	17	24	1.90
42266400--42266459	24	2.5	23	82	15	68	50	3	0	46	1.18
42267926--42267962	13	2.7	14	87	8	58	75	2	2	18	1.04
42267999--42268040	15	2.7	15	96	3	75	64	4	11	19	1.44
42271555--42271693	70	2.0	70	95	1	253	33	14	17	33	1.91
42276049--42276098	17	2.9	17	90	3	73	26	26	0	48	1.52
42278157--42278208	24	2.2	24	89	6	79	50	1	0	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42294845--42294895	12	4.3	12	78	9	52	17	25	3	52	1.61
42295097--42295338	50	4.7	50	79	4	209	23	26	21	28	1.99
42297912--42298246	40	8.4	39	85	4	325	31	16	30	22	1.96
42297984--42298167	20	9.2	20	64	10	99	29	18	32	20	1.96
42297943--42298246	80	3.8	80	87	1	414	30	16	30	22	1.96
42297912--42298246	119	2.8	119	85	2	431	31	16	30	22	1.96
42304044--42304089	19	2.4	20	75	10	51	36	2	2	58	1.22
42307989--42308051	30	2.1	30	93	0	108	30	23	7	38	1.84
42315310--42315339	3	10.0	3	100	0	60	33	0	0	66	0.92
42319588--42319657	28	2.6	28	86	4	99	25	10	12	51	1.71
42320431--42320463	17	2.0	17	88	5	50	42	3	0	54	1.15
42325807--42325915	33	3.5	32	89	9	156	28	30	22	18	1.97
42325834--42325917	27	2.9	27	87	10	105	27	30	25	16	1.97
42330974--42331198	40	5.7	40	82	6	233	25	28	21	25	1.99
42331130--42331207	40	1.9	41	82	10	97	26	28	20	24	1.99
42332032--42332069	18	2.1	18	100	0	76	31	18	28	21	1.97
42338942--42339166	40	5.7	40	82	6	233	25	28	21	25	1.99
42339098--42339175	40	1.9	41	82	10	97	26	28	20	24	1.99
42342925--42342968	17	2.6	17	96	0	79	43	2	40	13	1.57
42344973--42345002	14	2.1	15	93	6	53	20	10	26	43	1.83
42354185--42354228	23	2.0	21	83	16	54	31	0	13	54	1.39
42354969--42355135	73	2.3	72	83	1	199	28	22	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42355040--42355376	114	3.0	114	89	0	514	26	23	25	24	2.00
42355281--42355462	95	1.9	94	87	4	269	29	25	23	21	1.99
42355830--42355863	14	2.4	14	100	0	68	26	0	38	35	1.57
42355876--42355927	22	2.3	23	86	3	70	21	1	44	32	1.63
42355885--42355934	23	2.2	22	82	3	55	26	2	40	32	1.67
42356180--42356214	14	2.5	13	86	13	52	25	0	42	31	1.55
42356176--42356215	21	1.9	21	84	0	53	27	0	40	32	1.57
42355711--42356373	298	2.2	296	84	5	804	31	2	25	41	1.68
42356888--42357051	88	1.9	89	92	1	276	49	9	10	30	1.69
42357132--42357184	23	2.2	24	83	9	65	67	5	0	26	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226