genome.fa.s24.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  206  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61612420--61612522	54	1.9	54	87	0	152	30	22	19	28	1.98
61616963--61617069	52	2.1	52	96	0	196	36	17	11	34	1.86
61617714--61617929	108	2.0	108	98	0	414	27	14	20	37	1.92
61619246--61619290	20	2.3	19	88	7	63	31	0	0	68	0.89
61620098--61620157	20	3.0	21	72	22	65	43	0	0	56	0.99
61629419--61629525	57	1.9	56	82	5	135	36	5	15	42	1.71
61653295--61653334	20	2.0	20	90	0	62	47	2	2	47	1.29
61654239--61654769	114	4.7	113	82	5	653	25	22	25	26	2.00
61654239--61654767	224	2.3	224	82	5	681	25	21	25	26	2.00
61655067--61655135	14	4.8	14	74	13	59	21	0	43	34	1.53
61655321--61655367	14	3.3	15	82	8	62	27	0	31	40	1.57
61655354--61655394	21	2.0	20	85	4	55	19	0	41	39	1.52
61655394--61655427	14	2.4	14	90	9	52	23	0	44	32	1.54
61656009--61656239	76	3.0	76	86	5	336	53	10	8	27	1.63
61656009--61656241	80	3.0	79	87	3	346	54	10	8	27	1.62
61656315--61656356	22	2.0	21	86	9	59	71	2	0	26	0.98
61658231--61658279	21	2.5	20	83	6	55	40	0	14	44	1.45
61658726--61658849	25	5.0	25	72	16	98	20	25	20	32	1.98
61660490--61660543	27	2.0	27	100	0	108	40	11	7	40	1.69
61661605--61661701	33	2.8	35	72	20	89	45	3	1	50	1.24
61661884--61661948	13	5.1	13	76	9	53	35	26	9	29	1.87
61666412--61666447	15	2.5	14	86	8	54	44	8	0	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61667012--61667056	17	2.5	18	82	17	58	24	0	2	73	0.95
61667014--61667056	16	2.6	17	89	7	63	25	0	2	72	0.97
61668075--61668147	12	5.9	13	80	19	70	71	0	4	24	1.04
61668083--61668147	4	15.5	4	79	20	71	72	0	3	24	0.99
61668083--61668148	21	3.1	22	82	10	84	72	0	3	24	0.98
61668083--61668150	22	3.1	23	78	16	74	72	0	2	25	0.99
61672086--61672115	15	2.0	15	93	0	51	40	10	0	50	1.36
61672693--61672755	30	2.1	30	96	0	117	57	15	3	23	1.53
61677907--61677951	21	2.1	21	87	0	63	40	8	8	42	1.67
61679581--61679756	12	14.8	12	73	8	119	21	9	15	53	1.69
61679593--61679764	6	28.0	6	71	9	87	20	8	16	54	1.69
61679581--61679734	18	8.2	18	72	13	105	22	9	14	53	1.69
61681493--61681562	28	2.5	27	77	9	77	31	7	4	57	1.45
61683761--61683857	39	2.5	40	89	1	151	21	8	20	49	1.75
61684530--61684598	21	3.5	19	69	11	50	37	39	11	11	1.78
61685268--61685353	38	2.3	36	84	4	109	43	26	10	19	1.84
61686128--61686162	2	17.5	2	93	0	61	45	0	2	51	1.16
61689146--61689184	10	3.9	10	80	12	53	69	2	7	20	1.26
61696942--61697508	94	6.1	95	71	11	348	28	21	18	32	1.97
61697100--61697447	44	7.5	44	67	17	181	27	20	19	32	1.97
61697963--61697987	13	1.9	13	100	0	50	20	40	24	16	1.91
61698688--61698809	40	3.0	40	83	3	156	38	19	18	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61699281--61699312	7	4.6	7	96	0	55	0	31	15	53	1.43
61701455--61701486	15	2.2	14	94	5	55	6	28	12	53	1.62
61702860--61703016	72	2.2	72	85	4	201	26	5	14	54	1.60
61707505--61707558	21	2.6	21	68	11	56	48	37	1	12	1.53
61708463--61708498	18	2.0	18	89	10	56	69	5	0	25	1.10
61708467--61708507	18	2.2	19	86	4	57	70	4	0	24	1.06
61708642--61709125	114	4.2	113	78	9	430	28	23	17	30	1.97
61708642--61709128	229	2.1	227	80	5	538	28	23	17	30	1.97
61722662--61722695	16	2.1	16	88	0	50	50	14	17	17	1.79
61725470--61725510	21	2.0	21	90	0	64	29	21	29	19	1.98
61727415--61727448	16	2.1	16	88	0	50	50	14	17	17	1.79
61730944--61730984	20	2.0	20	85	9	55	53	0	2	43	1.13
61732310--61732340	16	1.9	16	93	0	53	25	35	19	19	1.95
61735179--61735219	21	2.0	21	81	18	50	21	26	19	31	1.97
61739671--61739711	21	2.0	21	81	18	50	21	26	19	31	1.97
61746613--61746709	48	2.0	48	97	0	185	28	27	4	39	1.75
61748941--61748982	22	1.9	22	90	0	66	35	21	7	35	1.81
61753269--61753333	7	8.9	7	72	21	53	23	4	0	72	1.03
61753266--61753333	16	4.0	17	77	14	70	23	4	0	72	1.03
61756635--61756676	17	2.5	17	88	0	57	42	38	16	2	1.61
61758412--61758608	98	2.0	98	93	0	340	28	9	23	38	1.86
61764842--61764934	18	5.2	18	83	5	125	33	17	22	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61770028--61770080	24	2.2	23	83	12	63	43	1	0	54	1.11
61779416--61781724	953	2.4	958	92	2	3761	30	13	22	34	1.92
61786792--61786957	56	3.0	55	92	3	271	34	12	16	35	1.87
61789234--61789292	20	2.8	21	82	5	75	33	5	23	37	1.77
61789261--61789300	20	2.0	20	85	0	53	40	7	20	32	1.80
61797060--61797097	20	1.9	20	88	0	58	31	21	23	23	1.98
61800333--61800379	22	2.2	21	88	3	67	25	25	38	10	1.88
61800338--61800396	22	2.7	22	84	2	66	27	27	32	13	1.94
61803039--61803070	15	2.1	15	100	0	64	25	12	0	62	1.30
61804506--61804562	23	2.5	22	81	10	62	36	1	17	43	1.60
61806895--61806928	17	1.9	17	88	5	50	44	0	2	52	1.16
61807059--61807103	22	2.0	22	91	8	74	46	8	20	24	1.78
61810065--61810118	20	2.7	18	81	18	63	29	1	1	66	1.12
61810065--61810108	21	2.2	21	88	11	67	29	0	2	68	1.02
61818283--61818444	58	2.8	58	81	4	166	33	14	24	27	1.94
61818586--61818644	27	2.2	27	81	6	66	40	15	20	23	1.90
61820323--61820388	20	3.3	20	75	10	73	42	18	4	34	1.70
61820842--61821242	67	6.0	67	86	1	545	42	18	2	37	1.63
61820859--61821242	134	2.9	134	94	0	653	42	18	2	36	1.63
61822916--61822983	19	3.5	19	73	11	57	61	1	1	35	1.14
61823400--61823446	16	2.9	16	78	12	51	38	0	8	53	1.32
61823616--61823679	15	4.2	15	75	11	58	57	4	10	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61829356--61829412	21	2.7	21	70	20	55	47	1	0	50	1.11
61829434--61829471	17	2.4	16	86	8	51	55	2	0	42	1.14
61830100--61830132	14	2.4	14	100	0	66	72	0	0	27	0.85
61832996--61833254	107	2.4	107	88	2	387	35	18	16	29	1.93
61835441--61835775	109	3.1	107	92	2	546	34	18	17	29	1.94
61836434--61836459	13	2.0	13	100	0	52	69	0	0	30	0.89
61836453--61836479	10	2.7	10	100	0	54	44	7	0	48	1.31
61836677--61836732	29	1.9	29	85	0	76	53	1	10	33	1.46
61844978--61845097	42	2.9	42	82	1	152	27	6	18	47	1.73
61847466--61847517	24	2.2	24	85	0	68	51	7	5	34	1.54
61851148--61851200	24	2.2	24	89	0	79	49	7	3	39	1.49
61854466--61854549	40	2.1	40	88	0	123	34	30	17	16	1.93
61854517--61854631	22	5.4	22	72	17	82	36	26	17	19	1.94
61854477--61854659	60	3.0	59	83	4	213	36	28	16	18	1.93
61854601--61854709	38	2.9	38	83	0	128	33	28	21	16	1.95
61858841--61858918	27	2.9	27	83	5	97	42	0	17	39	1.50
61860888--61860952	18	3.4	18	89	6	85	32	7	0	60	1.25
61861059--61861131	30	2.5	30	80	8	87	30	12	2	54	1.51
61865644--61865679	15	2.4	15	90	0	54	72	11	2	13	1.23
61867805--61868321	88	5.9	88	92	2	796	27	22	24	25	2.00
61869926--61869989	18	3.4	18	89	8	85	32	7	0	59	1.26
61872146--61872183	20	2.0	19	85	10	51	34	10	2	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61873670--61873733	27	2.4	28	84	7	87	56	3	7	32	1.44
61879785--61880303	88	5.9	88	93	1	805	27	22	24	25	2.00
61881914--61881978	18	3.4	18	89	6	85	32	7	0	60	1.25
61882085--61882157	30	2.5	30	80	8	87	30	12	2	54	1.51
61889029--61889069	21	2.0	21	81	18	50	21	26	19	31	1.97
61894181--61894211	16	1.9	16	93	0	53	61	0	0	38	0.96
61894234--61894286	25	2.0	27	82	7	65	49	1	1	47	1.23
61896513--61896559	21	2.1	23	84	7	62	21	19	38	21	1.94
61896459--61896560	21	4.8	20	65	17	55	27	23	30	18	1.98
61896763--61896912	30	5.0	30	80	0	147	16	36	32	14	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226