genome.fa.s24.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  167  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51446283--51446450	67	2.5	69	81	6	184	33	22	14	29	1.93
51454421--51454450	14	2.1	15	93	6	53	36	10	26	26	1.88
51454421--51454453	8	4.4	8	85	14	52	36	9	27	27	1.87
51458498--51458558	32	1.9	32	83	6	79	52	4	3	39	1.39
51459382--51459417	11	3.2	12	88	11	58	47	0	52	0	1.00
51459522--51459556	17	2.1	17	88	0	52	14	2	0	82	0.77
51460230--51460255	13	2.0	13	100	0	52	7	0	30	61	1.24
51461245--51461273	15	1.9	15	100	0	58	44	6	6	41	1.58
51464957--51464989	17	1.9	17	93	0	57	33	12	15	39	1.84
51465430--51465465	6	6.0	6	93	0	63	33	0	2	63	1.08
51466823--51466884	25	2.5	24	81	2	79	22	16	24	37	1.94
51469006--51469122	58	2.0	58	96	0	216	23	17	1	57	1.49
51471729--51471787	21	2.8	20	80	14	57	54	3	1	40	1.27
51471769--51471835	12	5.3	12	75	16	64	58	0	4	37	1.19
51471778--51471865	17	4.8	18	71	19	65	57	0	2	39	1.11
51471760--51471853	40	2.3	41	90	5	156	61	0	3	35	1.12
51471778--51471854	9	8.1	9	76	15	59	58	0	2	38	1.12
51484405--51484452	3	16.0	3	100	0	96	66	0	33	0	0.92
51484680--51484962	41	6.8	40	74	8	194	19	23	23	33	1.97
51489655--51489882	43	5.4	42	83	7	257	25	24	20	29	1.99
51489655--51489865	85	2.5	86	87	6	288	25	24	19	30	1.98
51494229--51494288	22	2.8	22	75	22	65	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51494224--51494290	23	3.0	23	83	14	72	40	0	1	58	1.07
51494230--51494304	21	3.5	20	82	14	71	42	0	0	57	0.98
51494254--51494305	19	2.6	19	81	9	59	46	0	0	53	1.00
51494366--51494402	18	2.0	19	89	5	58	32	8	0	59	1.27
51494557--51494611	20	2.7	21	80	5	76	63	0	1	34	1.05
51495553--51495860	90	3.4	90	87	0	447	51	14	7	26	1.69
51498458--51498507	18	2.7	18	84	3	64	42	0	18	40	1.50
51499235--51499453	112	2.0	111	85	4	298	31	19	20	28	1.97
51502360--51502456	30	3.2	30	78	8	108	22	24	23	28	1.99
51505357--51505437	40	2.0	40	97	0	153	27	23	9	39	1.86
51505722--51505750	8	3.6	8	100	0	58	51	0	0	48	1.00
51505713--51505857	29	4.9	29	76	17	95	57	2	0	40	1.15
51505713--51505857	28	4.9	28	77	16	109	57	2	0	40	1.15
51505773--51505809	16	2.2	16	90	9	56	64	0	0	35	0.94
51505727--51505834	57	1.9	56	81	9	130	57	0	0	40	1.11
51505722--51505837	8	12.7	9	71	22	50	56	0	0	41	1.11
51505726--51505848	57	2.1	57	78	12	128	56	1	0	41	1.15
51505911--51505959	12	4.4	12	78	17	61	69	6	0	24	1.11
51505907--51505992	21	4.0	21	77	15	95	67	4	1	26	1.17
51505950--51505982	7	4.6	7	92	7	57	69	0	3	27	1.03
51505950--51505982	15	2.3	14	94	5	57	69	0	3	27	1.03
51507393--51507418	7	3.7	7	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51510764--51510803	19	2.0	20	85	14	55	62	2	12	22	1.42
51512139--51513538	94	14.9	94	81	5	1299	29	18	18	32	1.95
51512277--51512359	43	1.9	43	80	9	98	33	20	15	30	1.94
51512184--51513522	50	28.5	44	65	20	242	30	19	18	32	1.95
51512184--51513538	188	7.2	188	85	3	1463	29	18	18	32	1.95
51515636--51515674	17	2.3	17	86	0	51	46	2	2	48	1.29
51523283--51523434	74	2.1	74	93	0	259	59	6	17	15	1.56
51524108--51524163	3	18.7	3	100	0	112	0	32	0	67	0.91
51524416--51524479	32	2.0	32	93	6	112	50	9	15	25	1.74
51530709--51530747	16	2.6	14	92	8	60	51	0	2	46	1.14
51535856--51535956	30	3.3	29	71	16	89	51	7	8	31	1.62
51536951--51536981	5	6.2	5	92	0	53	41	16	19	22	1.89
51537323--51537363	18	2.3	19	79	12	50	53	0	2	43	1.13
51538007--51538043	9	4.1	9	92	0	65	29	10	13	45	1.77
51541582--51541608	7	3.9	7	100	0	54	70	0	0	29	0.88
51544835--51544865	9	3.4	9	100	0	62	61	0	0	38	0.96
51555590--51555657	21	3.1	21	77	8	66	54	10	23	11	1.67
51565561--51565603	21	2.0	21	90	0	68	27	6	16	48	1.71
51572773--51572918	41	3.6	41	90	5	217	30	25	18	26	1.98
51572773--51572939	41	4.1	40	87	8	173	29	24	17	27	1.98
51575525--51575585	17	3.6	17	76	10	63	65	1	0	32	1.02
51579556--51579843	105	2.7	108	83	8	367	29	15	9	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51581371--51582884	754	2.0	754	99	0	2967	29	16	21	33	1.95
51585952--51585988	19	1.9	20	88	5	58	48	0	5	45	1.25
51586818--51586850	16	2.1	16	100	0	66	36	6	36	21	1.78
51587022--51587059	12	3.2	12	78	14	51	44	0	0	55	0.99
51587036--51587237	98	2.1	95	89	8	302	46	5	3	45	1.43
51587049--51587264	98	2.2	97	85	11	289	46	5	3	44	1.41
51587296--51587591	91	3.3	91	94	1	506	46	3	3	46	1.37
51592039--51592144	53	2.0	53	94	0	185	59	15	19	5	1.56
51593616--51593664	26	2.0	26	84	8	66	28	0	6	65	1.16
51596444--51596468	5	5.0	5	100	0	50	0	20	60	20	1.37
51596658--51596705	17	2.9	16	79	11	53	70	0	29	0	0.87
51596791--51597010	80	2.7	81	89	6	286	31	0	13	55	1.42
51596834--51596882	21	2.3	22	89	7	82	28	2	10	59	1.41
51596920--51596956	19	1.9	19	100	0	74	35	0	16	48	1.46
51596817--51597010	80	2.4	81	93	4	329	30	0	13	55	1.43
51597363--51597395	15	2.2	15	100	0	66	33	6	27	33	1.81
51600025--51600093	27	2.6	27	79	4	77	23	36	18	21	1.95
51605182--51605310	51	2.5	51	81	9	131	22	17	27	32	1.96
51619818--51619989	83	2.1	81	84	6	226	47	11	12	29	1.75
51619780--51619990	77	2.6	77	82	5	215	47	11	12	27	1.76
51620022--51620215	86	2.2	84	78	9	194	45	7	11	35	1.69
51620163--51620288	65	1.9	66	85	1	173	46	7	7	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51620944--51620997	20	2.7	20	82	0	63	55	7	3	33	1.45
51622130--51622167	18	2.2	18	85	4	51	50	5	2	42	1.39
51631411--51631492	25	3.3	24	72	13	67	31	18	28	21	1.97
51647636--51647662	13	2.1	13	100	0	54	70	14	0	14	1.17
51652729--51652796	19	3.1	23	63	18	54	54	5	4	35	1.45
51653509--51653540	15	2.1	16	94	5	57	43	9	6	40	1.62
51655740--51655770	14	2.1	15	94	5	55	70	0	0	29	0.87
51662796--51662893	36	2.7	35	79	6	106	29	20	10	39	1.85
51662796--51663153	73	4.9	73	78	9	322	26	21	15	37	1.92
51662828--51663123	146	2.0	145	83	7	368	25	21	15	37	1.93
51662828--51663153	36	8.9	36	78	10	306	25	21	15	37	1.93
51662835--51663160	109	3.0	105	77	13	295	24	21	16	37	1.93
51663847--51663878	13	2.5	13	100	0	64	40	9	31	18	1.83
51664643--51664695	18	2.7	21	72	22	60	24	26	3	45	1.70
51664649--51664693	18	2.5	19	82	10	67	24	24	4	46	1.71
51672939--51672975	17	2.1	19	85	10	51	35	2	16	45	1.61
51674710--51674757	25	1.9	25	83	8	62	35	12	16	35	1.87
51681265--51681300	18	2.0	18	94	0	63	41	0	16	41	1.48
51688674--51688770	28	3.5	28	91	1	151	26	22	26	23	2.00
51689109--51689239	27	4.9	26	76	10	113	18	16	18	46	1.84
51689109--51689247	54	2.6	53	82	11	149	18	16	17	46	1.84
51693121--51693167	16	2.7	17	80	9	51	53	6	6	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51694738--51695459	44	16.7	43	71	13	202	29	23	18	28	1.98
51694907--51695369	43	10.7	43	69	11	216	30	22	17	28	1.97
51694660--51695071	216	1.9	217	90	0	664	30	23	18	27	1.98
51694773--51695415	172	3.7	172	87	3	888	29	23	18	28	1.98
51694660--51695185	216	2.4	217	83	4	562	30	23	18	28	1.97
51694993--51695457	89	5.4	86	71	14	355	29	23	18	28	1.98
51703658--51703695	19	2.0	20	84	5	51	39	10	5	44	1.61
51707162--51707226	23	2.9	23	75	8	62	69	7	3	20	1.27
51707270--51707335	16	4.2	16	76	3	55	77	7	3	12	1.09
51707472--51707518	16	2.7	17	80	9	51	53	6	6	34	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226