genome.fa.s24.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  153  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47852258--47852345	23	3.5	25	74	18	67	50	18	0	31	1.47
47852288--47852664	197	1.9	195	89	5	582	49	19	1	28	1.58
47852507--47852579	37	2.0	37	100	0	146	50	16	2	30	1.59
47852395--47852512	25	4.8	25	80	6	141	44	21	3	30	1.68
47857652--47857720	21	3.3	21	87	0	93	31	17	46	4	1.68
47858140--47858266	43	3.0	42	82	3	155	28	19	22	29	1.98
47858153--47858447	42	7.0	42	79	6	274	26	21	19	32	1.97
47858158--47858449	85	3.4	84	74	9	234	26	21	19	32	1.97
47864758--47865040	143	2.0	141	90	1	440	16	13	21	48	1.81
47869381--47869426	16	3.0	16	75	6	51	56	0	2	41	1.11
47870625--47870921	81	3.7	81	81	5	327	27	12	12	46	1.78
47870625--47870958	81	4.1	82	79	8	317	26	11	13	48	1.76
47870937--47870986	6	8.5	6	97	2	93	16	0	14	70	1.18
47870786--47871141	184	1.9	183	85	5	486	28	9	12	50	1.71
47870964--47871184	76	2.8	75	84	8	253	29	9	12	48	1.72
47870962--47871221	83	3.2	80	72	13	223	29	10	11	48	1.72
47877558--47877604	20	2.3	20	85	0	58	27	8	10	53	1.64
47876739--47877801	523	2.0	531	86	4	1511	33	17	15	33	1.92
47878085--47878120	16	2.2	16	95	0	63	38	2	5	52	1.39
47887459--47887499	20	2.0	20	95	0	73	56	17	4	21	1.60
47888128--47888161	7	4.7	7	88	3	50	58	0	0	41	0.98
47892979--47893031	26	2.0	26	85	7	72	35	5	20	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47893090--47893151	30	2.1	30	81	6	72	46	6	4	41	1.51
47896343--47896440	24	4.2	23	77	12	92	40	13	11	34	1.80
47896516--47896618	54	1.9	54	87	0	152	36	17	22	23	1.94
47896599--47896798	39	5.1	39	79	3	195	40	18	23	18	1.91
47896646--47896797	79	1.9	78	85	4	207	40	17	22	19	1.92
47896648--47896815	39	4.3	39	75	7	142	40	17	21	20	1.91
47896648--47896815	79	2.1	79	82	5	198	40	17	21	20	1.91
47896597--47896814	118	1.8	118	82	1	276	40	18	22	19	1.92
47896833--47897037	54	3.8	54	88	2	277	38	14	20	26	1.91
47897019--47897148	39	3.3	38	83	4	170	41	16	23	19	1.90
47901597--47901654	30	1.9	30	89	0	89	46	13	8	31	1.74
47904246--47904275	2	15.0	2	100	0	60	50	0	50	0	1.00
47907505--47907597	21	4.4	21	86	0	105	4	40	19	35	1.71
47909460--47909884	9	48.8	9	72	15	331	31	1	21	45	1.60
47909603--47909880	79	3.4	79	88	9	434	30	1	21	46	1.58
47909465--47909873	88	4.8	88	82	10	463	31	1	21	45	1.61
47909793--47909884	25	3.6	25	81	5	85	28	1	21	48	1.57
47909993--47910036	23	1.9	23	95	0	79	38	0	18	43	1.50
47911144--47911181	18	2.1	18	95	0	67	50	15	7	26	1.72
47911850--47912556	365	1.9	365	92	0	1171	35	19	14	30	1.92
47912606--47912684	24	3.2	23	80	16	95	44	10	0	45	1.37
47912606--47912677	27	2.8	25	82	13	94	47	11	0	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47913116--47913155	14	2.9	14	84	0	53	32	45	0	22	1.53
47913266--47913340	14	5.1	14	75	10	60	38	32	1	28	1.65
47913891--47913969	41	1.9	41	84	0	104	34	27	18	18	1.95
47913913--47914157	115	2.1	115	85	5	318	30	23	21	24	1.99
47914068--47914235	73	2.3	73	92	0	282	27	22	23	26	1.99
47913944--47914328	188	2.0	188	88	2	576	27	22	23	26	2.00
47914132--47914459	115	2.9	115	90	0	496	27	23	22	25	2.00
47914372--47914532	73	2.2	73	87	2	225	27	21	23	27	1.99
47913913--47914759	302	2.8	301	85	3	1055	27	23	22	25	2.00
47914247--47914640	187	2.1	188	87	2	551	26	23	23	26	2.00
47914444--47914759	114	2.8	114	83	3	395	27	24	23	24	2.00
47915893--47915937	19	2.4	18	78	10	54	75	6	2	15	1.11
47923941--47923987	21	2.2	22	92	3	78	21	19	38	21	1.94
47940930--47941186	135	1.9	137	84	3	349	54	11	8	25	1.63
47941252--47941293	15	2.9	15	86	6	61	61	2	4	30	1.29
47941404--47941443	21	1.9	21	84	0	53	55	5	5	35	1.44
47941621--47942121	172	2.9	170	82	3	560	48	16	10	25	1.77
47943659--47943689	16	2.0	15	93	6	53	45	12	12	29	1.80
47944189--47944214	11	2.4	11	100	0	52	73	26	0	0	0.84
47944448--47944696	135	1.8	135	88	1	383	54	10	8	26	1.63
47944876--47944906	16	1.9	16	100	0	62	48	6	12	32	1.67
47950588--47950631	21	2.1	21	95	0	79	31	15	13	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47951368--47951392	10	2.5	10	100	0	50	64	8	8	20	1.46
47952893--47952921	14	2.0	15	93	6	51	6	24	0	68	1.13
47954324--47954606	91	3.2	91	84	3	344	25	22	15	37	1.93
47957061--47957196	73	1.9	72	81	6	168	25	22	22	30	1.99
47957030--47957196	71	2.4	70	78	8	169	28	23	22	25	1.99
47957944--47958005	21	3.0	21	75	0	61	25	0	24	50	1.50
47958048--47958099	20	2.6	20	85	8	70	13	0	38	48	1.43
47958234--47958273	14	2.9	14	92	3	64	17	5	32	45	1.70
47958234--47958286	7	7.8	6	84	12	52	16	3	32	47	1.65
47958234--47958286	14	3.8	13	83	16	63	16	3	32	47	1.65
47958234--47958295	21	3.0	20	81	6	70	16	3	35	45	1.63
47958234--47958314	28	2.9	28	75	12	69	19	2	30	46	1.63
47958772--47959002	115	2.0	115	93	0	399	28	18	20	32	1.96
47960267--47960337	21	3.4	21	84	0	88	35	16	42	5	1.72
47960708--47960827	42	2.8	42	89	1	186	25	19	20	35	1.96
47960841--47960870	15	2.0	15	93	0	51	13	23	23	40	1.90
47962334--47962425	19	4.8	19	65	13	55	25	4	4	66	1.29
47962421--47962472	19	2.7	19	75	0	59	28	7	0	63	1.22
47962464--47962511	19	2.5	19	80	6	53	27	4	2	66	1.21
47966556--47966623	35	1.9	35	81	0	82	44	23	7	25	1.79
47969131--47969187	2	28.5	2	100	0	114	0	49	0	50	1.00
47973089--47973207	35	3.4	35	83	6	134	15	11	31	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47983775--47983926	43	3.5	43	81	7	166	27	16	24	31	1.96
47983776--47983945	86	2.0	85	80	11	195	26	17	25	31	1.97
47991781--47991897	43	2.7	44	85	5	141	27	18	23	29	1.98
47991814--47991934	43	2.8	43	85	7	140	25	18	23	32	1.97
48000069--48000428	47	7.6	47	94	1	585	28	29	8	33	1.86
48002117--48002141	13	1.9	13	100	0	50	36	16	16	32	1.90
48004647--48004694	23	2.1	23	92	7	80	54	14	20	10	1.70
48007513--48007641	29	4.4	30	74	9	106	33	20	4	41	1.73
48007536--48007609	30	2.5	28	82	8	85	32	17	4	45	1.67
48007948--48008012	34	1.9	34	84	12	89	21	53	13	10	1.70
48007947--48008016	17	4.1	18	75	10	60	21	55	12	10	1.66
48008209--48008238	15	2.1	15	93	6	53	83	0	16	0	0.65
48008204--48008244	17	2.5	16	88	7	64	82	0	17	0	0.66
48008507--48008545	18	2.2	18	86	4	53	84	5	10	0	0.76
48009026--48009269	54	4.4	53	74	15	217	35	11	10	42	1.75
48009022--48009365	38	9.2	37	75	13	248	34	12	11	42	1.78
48009097--48009309	37	5.6	37	78	13	213	36	11	11	40	1.77
48009093--48009327	75	3.1	74	82	10	255	35	12	11	40	1.79
48009305--48009387	38	2.2	38	84	2	103	36	13	13	37	1.83
48017554--48018182	75	8.3	76	88	5	848	28	15	19	36	1.93
48017554--48018182	151	4.1	151	88	4	885	28	15	19	36	1.93
48018529--48018597	30	2.3	30	87	0	93	37	18	1	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48019223--48019276	22	2.5	22	82	14	67	77	1	20	0	0.86
48019217--48019275	28	2.1	29	87	9	86	76	1	22	0	0.88
48019573--48019605	6	5.8	6	92	7	52	84	15	0	0	0.61
48020088--48020555	37	12.5	38	74	15	179	35	11	11	41	1.77
48020088--48020329	54	4.4	54	77	13	244	34	12	9	42	1.76
48020142--48020386	37	6.6	38	79	8	263	34	12	10	42	1.78
48020088--48020330	111	2.2	108	80	8	278	34	12	9	42	1.75
48020084--48020386	75	4.1	74	78	11	286	33	12	10	43	1.76
48020156--48020378	111	2.0	110	85	4	297	33	12	11	43	1.78
48020159--48020407	20	13.1	20	70	23	80	34	12	11	41	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226