Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  44  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14979869--14979926
10
6.1
10
72
23
54
65
1
3
29
1.19
14979871--14979926
9
6.0
9
76
15
51
66
1
3
28
1.19
14980617--14980671
19
2.8
20
81
8
60
32
3
1
61
1.24
14987292--14987356
31
2.1
31
88
0
94
40
13
7
38
1.74
14988097--14988124
2
14.0
2
100
0
56
0
50
0
50
1.00
14997999--14998062
24
2.5
26
82
10
69
57
0
0
42
0.98
14998032--14998075
8
5.6
8
83
5
54
65
0
0
34
0.93
14998204--14998262
22
2.8
21
75
10
57
66
3
1
28
1.18
15011734--15011777
23
2.0
23
86
8
65
65
2
0
31
1.05
15011734--15011778
21
2.2
20
84
15
56
66
2
0
31
1.04
15012448--15012679
41
6.0
41
80
11
245
18
17
28
34
1.94
15012483--15012541
30
2.0
30
89
0
91
11
13
30
44
1.80
15012448--15012663
71
2.9
71
74
14
218
17
17
29
35
1.93
15022636--15022682
25
2.0
24
87
8
69
36
10
17
36
1.84
15025414--15025455
22
2.0
22
86
13
61
42
0
14
42
1.45
15026343--15026411
25
2.7
26
76
17
65
20
30
18
30
1.97
15028629--15028662
18
1.9
17
94
5
59
41
0
2
55
1.15
15033489--15033522
18
1.9
18
88
5
52
47
26
8
17
1.77
15034220--15034350
39
3.4
38
77
6
129
41
23
6
28
1.78
15040412--15040480
28
2.4
28
81
13
79
44
1
7
46
1.40
15040412--15040480
27
2.4
29
81
13
81
44
1
7
46
1.40
15041015--15041048
18
1.9
18
88
5
52
64
2
2
29
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15051676--15051734
30
2.0
30
96
0
109
37
15
10
37
1.81
15056320--15056402
30
2.8
30
100
0
166
39
18
9
32
1.83
15063146--15063176
16
1.9
16
100
0
62
48
0
0
51
1.00
15065024--15065054
6
5.2
6
100
0
62
32
32
35
0
1.58
15075110--15075168
29
2.0
29
100
0
118
52
16
6
23
1.68
15076060--15076084
12
2.1
12
100
0
50
32
0
8
60
1.26
15076362--15076464
42
2.5
42
100
0
206
22
32
31
14
1.94
15078765--15078813
21
2.3
21
78
0
53
30
38
28
2
1.68
15078938--15078985
25
1.9
25
100
0
96
45
0
14
39
1.45
15079055--15079156
22
4.6
22
74
11
109
48
25
0
26
1.52
15079030--15079417
45
8.5
46
77
14
351
49
22
0
27
1.53
15079027--15079417
23
17.2
23
76
11
358
49
22
0
27
1.53
15079027--15079409
68
5.6
68
83
8
451
48
23
0
27
1.53
15079412--15079655
116
2.1
116
94
1
427
39
8
7
44
1.63
15082666--15083013
123
2.8
124
87
1
500
34
21
16
28
1.94
15088907--15088985
34
2.3
34
80
8
81
40
12
12
34
1.81
15091417--15091561
41
3.5
41
91
1
229
28
19
28
23
1.98
15095950--15095989
21
1.9
21
84
0
53
55
0
12
32
1.38
15096292--15096342
18
2.8
18
84
3
57
9
9
3
76
1.14
15108124--15108152
15
1.9
15
100
0
58
13
31
6
48
1.69
15109778--15110324
17
30.7
17
73
10
380
46
9
12
31
1.73
15109791--15110324
89
6.0
88
79
8
488
47
9
11
31
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15109773--15110324
36
15.5
36
76
9
438
47
9
12
30
1.72
15110488--15110545
16
3.4
17
72
13
64
39
12
12
36
1.80
15111093--15111137
17
2.6
17
85
0
63
8
20
46
24
1.78
15111179--15111246
4
17.0
4
81
14
70
1
23
0
75
0.89
15111171--15111244
28
2.9
27
81
16
86
2
20
0
77
0.90
15111179--15111246
14
5.3
13
78
16
63
1
23
0
75
0.89
15111176--15111246
30
2.4
31
84
11
94
1
22
0
76
0.87
15111349--15111379
14
2.2
14
94
0
53
0
22
0
77
0.77
15111347--15111404
22
2.6
23
81
15
68
1
18
3
75
1.03
15111347--15111415
22
3.1
21
73
19
61
1
17
4
76
1.02
15111725--15111892
30
5.6
30
77
8
164
37
5
22
34
1.77
15112056--15112814
76
9.9
77
87
5
1011
34
21
17
26
1.95
15112057--15112814
304
2.5
305
90
3
1198
34
21
17
26
1.95
15121224--15121743
35
14.6
34
74
9
337
44
10
13
31
1.76
15121439--15121480
20
2.2
19
86
4
57
38
11
9
40
1.75
15121206--15121748
53
10.2
52
77
11
333
44
10
12
32
1.76
15121224--15121719
17
28.1
17
75
10
354
45
10
13
31
1.76
15121709--15121748
20
2.0
20
85
4
55
30
10
10
50
1.69
15121852--15121896
20
2.3
19
84
3
54
35
4
13
46
1.63
15121895--15121952
19
3.4
17
70
13
55
37
12
13
36
1.82
15122104--15122133
13
2.3
13
94
0
51
70
3
0
26
1.03
15122575--15122649
10
7.3
10
81
14
66
0
25
0
74
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15122578--15122648
7
10.3
7
73
23
62
0
26
0
73
0.84
15122739--15122808
18
4.1
16
72
18
52
1
21
4
72
1.09
15122756--15122825
34
2.1
33
84
10
88
0
15
10
74
1.07
15123127--15123297
30
5.8
30
81
2
168
35
4
23
35
1.76
15123127--15123295
29
5.8
29
80
6
155
36
4
24
34
1.76
15123127--15123295
59
2.9
59
84
6
193
36
4
24
34
1.76
15124809--15124846
18
2.2
17
86
9
51
21
7
2
68
1.28
15133163--15133209
23
2.0
23
83
0
58
40
10
10
38
1.75
15137339--15137475
46
3.0
45
93
2
220
28
27
8
35
1.86
15138704--15138750
17
2.8
17
93
3
78
53
19
0
27
1.45
15150075--15150139
32
2.1
32
94
2
114
32
9
10
47
1.70
15150443--15150477
4
9.0
4
93
6
63
25
0
0
74
0.82
15150703--15150795
32
2.9
31
85
7
116
78
10
10
0
0.97
15150736--15150780
23
2.0
23
86
0
63
77
8
13
0
0.98
15153934--15153998
32
2.1
32
94
2
114
32
9
10
47
1.70
15154638--15154677
20
2.0
20
90
4
64
62
0
0
37
0.95
15155312--15155368
23
2.6
22
75
22
57
47
10
3
38
1.55
15155323--15155368
23
2.1
23
84
15
62
43
8
4
43
1.55
15155537--15155561
2
12.5
2
100
0
50
52
0
0
48
1.00
15157345--15157384
18
2.2
18
86
8
55
67
12
0
20
1.22
15158490--15158519
12
2.5
12
94
0
51
36
10
0
53
1.35
15164810--15164851
4
10.5
4
85
10
59
73
0
2
23
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15178358--15178384
13
2.1
13
100
0
54
33
0
14
51
1.43
15179051--15179222
10
17.7
10
67
21
75
58
2
3
35
1.28
15179178--15179245
18
3.9
17
71
17
50
63
0
5
30
1.18
15186702--15186732
7
4.4
7
100
0
62
41
16
16
25
1.88
15198077--15198147
37
1.9
37
94
2
126
35
9
30
23
1.88
15199244--15199292
21
2.2
21
82
7
53
61
0
6
32
1.21
15199254--15199294
21
2.0
21
90
0
64
60
0
7
31
1.24
15203187--15203255
23
3.0
23
86
0
102
37
24
23
14
1.92
15203164--15203255
46
2.0
46
82
4
114
36
22
25
15
1.93
15205120--15205164
23
2.0
23
86
4
65
33
0
8
57
1.30
15207244--15207287
23
1.9
22
82
17
54
36
25
0
38
1.56
15207332--15207421
45
2.0
45
95
0
162
32
25
17
24
1.97
15209757--15209782
11
2.4
11
100
0
52
73
0
0
26
0.84
15211552--15211614
31
2.0
31
96
0
117
38
31
7
22
1.83
15212863--15212910
18
2.6
17
81
12
51
37
25
0
37
1.56
15213556--15213613
30
1.9
31
89
10
93
8
10
13
67
1.42
15215182--15215742
237
2.4
228
88
3
818
44
7
8
38
1.64
15224746--15224787
12
3.4
12
75
18
50
35
7
19
38
1.79
15229706--15229752
19
2.5
20
80
16
55
48
0
21
29
1.50
15231910--15231944
15
2.3
15
95
0
61
22
2
5
68
1.24
15232155--15232210
19
2.8
20
76
17
62
33
8
1
55
1.42
15236612--15236667
6
9.3
6
81
11
62
78
1
19
0
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15236615--15236665
5
9.8
5
83
12
59
80
1
17
0
0.81
15236612--15236667
22
2.7
21
88
5
78
78
1
19
0
0.84
15236612--15236667
11
4.7
11
78
22
60
78
1
19
0
0.84
15238548--15238862
41
7.7
41
92
0
486
22
27
21
28
1.99
15241451--15242017
134
4.2
134
76
6
486
30
24
21
23
1.99
15241449--15242029
178
3.3
176
80
6
584
30
24
21
23
1.99
15241446--15242029
89
6.6
89
81
4
493
30
24
21
23
1.99
15241444--15241920
223
2.1
224
81
4
552
30
24
21
23
1.99
15242014--15242080
31
2.2
31
86
0
89
37
19
23
19
1.94
15242379--15242505
44
2.9
45
75
12
118
34
14
25
25
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226