genome.fa.s24.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  188  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56742922--56742986	11	6.1	10	83	13	69	47	3	27	21	1.65
56742922--56742996	33	2.2	33	84	9	98	48	2	28	21	1.64
56742922--56742982	22	2.8	22	85	5	79	45	3	29	21	1.67
56744222--56744266	22	2.0	22	86	4	63	37	17	6	37	1.76
56744726--56745117	131	3.0	132	89	1	608	25	26	20	28	1.99
56745114--56745402	89	3.2	89	90	0	418	24	23	25	26	2.00
56745167--56745468	45	6.8	45	68	15	135	23	22	23	29	1.99
56745409--56745803	44	8.9	43	72	11	201	30	22	16	31	1.96
56761789--56761918	48	2.7	48	79	13	119	34	16	21	27	1.94
56763452--56763492	20	2.2	19	86	8	57	41	2	2	53	1.27
56763641--56763711	22	3.1	22	73	18	74	39	4	1	54	1.28
56764199--56764318	55	2.2	55	95	0	213	60	1	8	30	1.36
56765001--56765025	13	1.9	13	100	0	50	64	4	0	32	1.12
56765000--56765037	19	2.0	19	85	10	51	68	2	0	28	1.03
56765269--56765309	21	2.0	21	85	0	55	34	4	19	41	1.73
56765314--56765351	10	4.1	9	86	13	51	42	2	0	55	1.14
56765316--56765356	18	2.3	18	87	8	57	41	2	0	56	1.13
56772628--56772680	26	2.0	27	88	3	81	37	7	20	33	1.81
56772712--56772869	79	2.0	79	98	0	307	26	6	8	57	1.54
56775989--56776079	48	1.9	46	93	4	155	57	7	0	35	1.28
56776063--56776087	7	3.6	7	100	0	50	84	0	0	16	0.63
56776520--56776544	12	2.1	12	100	0	50	16	16	24	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56778032--56778126	28	3.4	27	73	12	93	18	15	18	46	1.84
56780680--56780752	23	2.9	27	73	19	68	53	0	6	39	1.28
56788338--56788377	19	2.0	19	85	9	53	65	5	0	30	1.14
56795453--56795528	18	4.3	18	75	16	70	59	0	2	38	1.12
56795458--56795516	8	7.1	8	80	14	57	57	0	1	40	1.09
56795464--56795531	32	2.0	34	83	8	86	58	0	2	38	1.13
56799092--56799140	11	4.5	11	77	10	55	18	20	12	48	1.79
56808418--56808443	3	8.7	3	100	0	52	0	34	0	65	0.93
56809043--56809084	22	2.1	19	86	13	57	52	0	2	45	1.13
56827533--56827608	38	2.0	38	86	0	107	38	9	11	40	1.74
56833809--56833843	3	11.7	3	100	0	70	0	0	31	68	0.90
56843870--56843895	13	2.0	13	100	0	52	30	38	0	30	1.58
56845738--56845824	27	3.2	27	91	0	138	42	18	17	21	1.89
56845738--56845838	27	3.7	27	86	2	116	39	20	15	23	1.91
56845989--56846072	26	3.2	26	84	0	114	22	16	19	41	1.90
56853477--56853528	27	1.9	27	84	7	70	36	23	17	23	1.95
56853773--56853834	28	2.2	28	85	2	81	27	20	19	32	1.97
56866075--56866112	10	3.8	10	80	13	51	68	0	2	28	1.03
56866166--56866265	49	2.0	49	90	0	155	59	10	9	22	1.57
56867029--56867093	28	2.4	27	85	12	80	50	3	0	46	1.17
56868884--56869036	43	3.6	42	80	7	139	28	16	24	29	1.97
56871084--56871125	21	2.0	22	90	4	68	30	4	26	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56873837--56873861	13	1.9	13	100	0	50	40	24	4	32	1.73
56876389--56876451	28	2.2	28	77	0	72	25	19	3	52	1.60
56876545--56876644	52	1.9	52	83	4	130	41	1	6	52	1.33
56879541--56879685	40	3.1	50	79	17	193	43	16	8	31	1.79
56879541--56879796	51	5.0	51	77	21	295	44	17	8	28	1.78
56879670--56879697	12	2.3	12	100	0	56	57	21	0	21	1.41
56879742--56879852	33	3.4	34	82	10	115	43	17	8	31	1.78
56883326--56883360	18	2.0	17	88	5	52	45	0	0	54	0.99
56882876--56883619	120	6.2	120	98	0	1341	43	2	5	47	1.41
56883568--56883602	18	2.0	17	88	5	52	45	0	0	54	0.99
56883767--56883857	45	2.0	45	85	2	121	37	28	6	27	1.82
56883838--56883906	16	4.2	16	92	3	120	36	37	1	24	1.65
56883838--56883906	33	2.1	32	94	2	120	36	37	1	24	1.65
56886956--56886984	11	2.5	12	94	5	51	55	0	3	41	1.17
56887008--56887041	17	2.0	17	94	0	59	61	0	0	38	0.96
56886954--56887032	40	2.0	40	92	0	131	63	0	1	35	1.03
56887009--56887047	17	2.2	17	86	4	51	66	0	0	33	0.92
56887009--56887054	18	2.6	17	82	3	56	60	0	0	39	0.97
56888687--56888722	9	4.0	9	100	0	72	33	0	22	44	1.53
56893487--56893511	12	2.1	12	100	0	50	24	36	24	16	1.94
56893671--56893727	9	6.2	9	71	4	51	43	26	10	19	1.83
56894460--56894499	21	1.9	21	89	0	62	67	0	2	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56895259--56895292	16	2.1	16	88	0	50	41	2	20	35	1.68
56899856--56899893	18	2.1	19	90	5	60	65	0	2	31	1.06
56899911--56899995	27	3.0	28	75	16	86	58	4	0	36	1.19
56905271--56905332	31	2.0	31	96	0	115	30	9	16	43	1.80
56914764--56914935	89	1.9	89	83	6	224	35	20	8	35	1.83
56918838--56918873	17	2.1	18	89	5	56	69	5	0	25	1.10
56918897--56918964	32	2.1	33	83	2	84	63	2	1	32	1.18
56919124--56919164	21	2.0	22	90	9	68	53	0	0	46	1.00
56919415--56919448	11	3.2	11	83	8	52	23	11	32	32	1.91
56919504--56919528	13	1.9	13	100	0	50	24	4	0	72	1.02
56919490--56919546	19	2.9	18	75	15	51	35	1	0	63	1.05
56921792--56921941	41	3.7	41	88	3	221	24	29	20	26	1.99
56921790--56921966	82	2.2	83	83	11	222	25	28	19	27	1.99
56923987--56924011	13	1.9	13	100	0	50	68	24	0	8	1.16
56924153--56924289	40	3.4	40	73	4	125	40	20	18	20	1.92
56924327--56924650	41	7.9	41	89	1	461	23	20	25	31	1.98
56925279--56925308	13	2.3	13	94	0	51	20	0	40	40	1.52
56925323--56925374	21	2.5	21	78	6	52	25	1	36	36	1.67
56928315--56928495	86	2.1	86	98	1	355	40	4	7	47	1.52
56928562--56928781	51	4.1	51	86	13	325	45	17	7	29	1.75
56928652--56928679	12	2.3	12	100	0	56	57	21	0	21	1.41
56928601--56928730	63	2.1	63	100	0	260	47	18	6	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56928562--56928841	114	2.5	114	98	1	537	46	18	7	27	1.75
56928715--56928841	63	2.0	63	96	3	238	48	19	6	25	1.73
56928766--56928793	12	2.3	12	100	0	56	57	21	0	21	1.41
56928738--56928841	33	3.2	33	64	20	85	47	19	7	25	1.76
56928787--56928897	33	3.4	34	82	10	115	43	17	8	31	1.78
56931915--56933005	119	9.2	120	95	3	1908	43	2	5	47	1.40
56931915--56933005	237	4.6	239	95	3	1931	43	2	5	47	1.40
56932335--56932419	42	1.9	44	81	9	102	47	0	4	48	1.23
56932597--56932633	17	2.2	17	90	4	58	40	0	0	59	0.97
56932836--56932869	17	2.0	17	88	11	52	44	0	0	55	0.99
56932955--56933002	15	2.9	18	79	17	59	47	0	0	52	1.00
56932968--56933008	15	2.7	15	82	17	50	48	0	2	48	1.14
56933137--56933241	42	2.6	42	83	4	126	36	29	3	30	1.75
56933222--56933288	16	4.2	16	85	11	102	35	37	1	25	1.65
56933222--56933288	31	2.1	32	89	8	102	35	37	1	25	1.65
56933439--56933469	13	2.3	14	94	5	55	58	0	0	41	0.98
56933431--56933558	23	5.5	22	69	23	75	57	0	4	38	1.20
56933448--56933634	49	3.8	48	86	12	258	53	0	6	39	1.28
56933503--56933627	22	5.2	22	66	22	65	52	0	7	40	1.29
56933414--56933784	98	4.0	96	79	18	421	53	0	6	40	1.26
56933594--56933670	37	2.1	37	92	7	131	53	0	7	38	1.30
56933496--56933795	135	2.2	133	87	10	436	53	0	7	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56933744--56933795	11	4.6	11	76	11	52	50	0	5	44	1.26
56933572--56933795	86	2.7	84	82	12	239	52	0	7	40	1.29
56933631--56933773	49	2.9	50	92	6	247	53	0	6	39	1.28
56933649--56933784	23	5.7	23	71	25	104	52	0	6	40	1.27
56937784--56937816	12	2.8	12	90	4	50	69	0	0	30	0.88
56939781--56939833	27	2.0	25	82	7	61	54	0	9	35	1.33
56946303--56946352	17	2.7	20	78	18	70	10	0	44	46	1.37
56950942--56950991	17	2.7	20	78	18	70	10	0	44	46	1.37
56959074--56959143	35	2.0	35	86	5	97	14	18	27	40	1.89
56960264--56960319	21	2.7	21	91	0	94	25	8	37	28	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226