genome.fa.s24.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  96  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29993417--29993484	9	7.6	9	72	4	57	25	1	2	70	1.09
29996204--29996236	17	1.9	17	100	0	66	39	6	18	36	1.75
30000662--30000691	15	2.0	15	100	0	60	40	20	13	26	1.89
30007068--30007113	13	3.4	14	73	11	51	60	2	2	34	1.21
30007068--30007124	26	2.4	22	88	11	78	61	1	1	35	1.17
30008381--30008442	18	3.3	18	70	16	63	40	6	9	43	1.63
30008381--30008457	38	2.0	38	100	0	154	41	5	7	45	1.55
30013876--30014084	42	5.0	42	83	6	253	32	20	24	23	1.98
30013876--30014084	85	2.5	84	90	5	316	32	20	24	23	1.98
30014518--30014557	12	3.3	12	89	0	62	5	40	15	40	1.68
30014545--30014610	21	3.1	21	82	0	78	3	42	18	36	1.66
30020061--30020368	9	34.7	9	81	7	330	33	2	16	47	1.60
30024025--30024059	14	2.4	15	90	4	54	42	37	0	20	1.52
30024830--30024914	21	4.0	20	72	11	53	45	31	1	21	1.59
30024838--30024917	14	5.6	14	70	14	56	47	31	0	21	1.51
30024974--30025402	113	3.8	113	73	6	364	26	24	18	31	1.98
30025518--30025750	112	2.1	113	80	5	258	24	21	20	33	1.97
30034195--30034219	5	5.0	5	100	0	50	60	0	0	40	0.97
30036151--30036186	18	2.0	18	94	0	63	22	30	16	30	1.96
30036493--30037033	269	2.0	269	98	0	1055	25	21	19	33	1.97
30040529--30040644	49	2.4	49	92	0	196	30	8	15	45	1.76
30045889--30045924	18	2.0	18	100	0	72	33	16	11	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30053488--30053534	10	4.6	10	85	12	51	59	4	2	34	1.29
30060977--30061005	15	2.0	15	93	6	51	51	0	27	20	1.47
30061201--30061372	87	2.0	87	90	0	272	27	14	20	37	1.92
30066779--30066818	19	2.1	19	86	9	55	32	10	0	57	1.32
30067276--30067314	11	3.5	11	86	6	53	25	2	12	58	1.47
30068805--30068830	6	4.3	6	100	0	52	46	0	0	53	1.00
30069840--30069865	10	2.6	10	100	0	52	15	7	0	76	0.99
30070048--30070100	25	2.1	25	82	6	63	47	3	0	49	1.19
30070065--30070141	28	2.7	30	73	15	74	46	3	0	49	1.20
30070124--30070167	22	2.0	22	86	0	61	52	0	0	47	1.00
30070883--30070940	11	5.2	11	87	2	80	22	32	1	43	1.64
30070883--30070958	22	3.4	23	84	14	97	25	31	1	42	1.63
30070882--30070956	33	2.2	33	84	9	98	24	32	1	42	1.63
30070882--30070958	11	6.9	11	74	21	72	24	31	1	42	1.63
30072193--30072225	7	4.7	7	100	0	66	27	0	15	57	1.38
30077129--30077173	21	2.1	21	84	8	56	33	40	24	2	1.68
30077291--30077378	45	2.0	45	90	0	140	35	0	13	51	1.42
30077301--30077501	70	2.9	70	94	0	348	37	0	12	49	1.41
30077304--30077473	25	7.2	25	67	13	110	37	0	13	48	1.43
30083027--30083098	34	2.1	34	100	0	144	43	19	5	31	1.74
30083791--30083827	17	2.1	18	90	5	58	37	0	5	56	1.22
30083974--30084049	24	3.1	24	82	1	71	42	1	34	22	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30087091--30087199	51	2.1	53	83	8	136	27	15	23	33	1.95
30087076--30087252	26	6.8	26	72	10	103	28	14	23	33	1.94
30087040--30087211	77	2.2	78	80	3	204	28	16	25	29	1.97
30103687--30103720	9	3.9	9	88	3	52	76	0	0	23	0.79
30104200--30104250	23	2.2	23	85	0	66	29	7	19	43	1.79
30105641--30106014	30	12.5	30	78	11	295	41	15	8	33	1.78
30105640--30106026	60	6.5	60	78	9	353	42	16	8	33	1.78
30105702--30105747	23	2.0	23	91	0	74	41	15	13	30	1.85
30105725--30106026	94	3.3	90	81	7	338	43	16	7	32	1.77
30105612--30106037	124	3.5	122	78	9	369	43	15	8	32	1.77
30105725--30106026	30	9.9	30	85	4	334	43	16	7	32	1.77
30107707--30107740	16	2.1	17	94	5	61	23	11	0	64	1.26
30109898--30109952	27	2.0	27	100	0	110	74	7	10	7	1.21
30113056--30113119	33	1.9	34	90	3	103	43	21	7	26	1.80
30129118--30129144	11	2.5	11	100	0	54	88	0	11	0	0.50
30130377--30131144	44	17.7	43	73	10	459	30	20	22	27	1.98
30130430--30131091	172	3.8	172	81	7	695	30	20	22	27	1.98
30130597--30131106	217	2.4	214	85	4	677	30	20	21	27	1.98
30130808--30131206	84	4.6	85	73	13	300	28	20	22	28	1.98
30130808--30131225	171	2.4	172	83	6	542	28	20	22	27	1.99
30132012--30132057	22	2.0	22	84	16	58	15	6	8	69	1.34
30135246--30135295	13	3.9	13	77	12	59	30	6	26	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30136268--30136310	19	2.3	19	83	0	59	72	2	4	20	1.14
30136278--30136338	28	2.2	28	85	5	79	70	1	3	24	1.11
30136414--30136453	19	2.0	21	90	9	66	30	12	0	57	1.36
30136421--30136483	29	2.1	30	94	2	110	31	7	0	60	1.26
30136421--30136499	10	8.3	9	74	14	61	27	7	0	64	1.20
30136665--30136698	10	3.4	10	95	0	59	50	0	0	50	1.00
30136799--30136949	79	1.9	77	81	7	180	33	8	19	38	1.82
30142175--30142200	12	2.2	12	100	0	52	0	7	0	92	0.39
30146492--30146532	21	2.0	21	81	18	50	31	19	26	21	1.97
30153186--30153290	55	1.9	55	88	3	158	34	11	18	36	1.86
30155549--30155616	10	7.0	10	71	6	59	20	1	2	75	1.02
30155549--30155586	11	3.5	11	82	7	51	15	0	2	81	0.80
30155561--30155602	19	2.3	18	84	8	50	16	0	4	78	0.91
30155550--30155624	38	2.0	38	83	0	96	21	1	2	74	1.01
30157276--30157317	22	1.9	22	100	0	84	57	2	7	33	1.39
30157277--30157325	22	2.5	19	87	12	64	55	2	6	36	1.37
30160548--30160591	19	2.3	19	88	0	61	56	27	2	13	1.49
30166242--30166374	40	3.4	40	73	9	121	30	24	19	25	1.98
30166533--30166579	24	2.0	24	84	16	62	51	17	0	31	1.46
30168313--30168351	6	6.3	6	96	3	69	15	15	0	69	1.20
30168325--30168453	57	2.3	57	86	6	174	25	17	6	50	1.69
30174770--30174794	13	1.9	13	100	0	50	68	0	8	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30175352--30175409	30	2.0	29	86	10	82	55	13	5	25	1.59
30175415--30175507	44	2.1	44	87	0	132	31	3	18	47	1.64
30182631--30182673	20	2.1	21	95	4	79	27	0	4	67	1.10
30184239--30184512	147	1.9	147	82	0	350	31	18	20	29	1.97
30186967--30187103	69	2.0	69	84	5	179	35	6	4	54	1.47
30189767--30189886	64	1.9	64	92	1	206	30	13	19	36	1.90
30193987--30194012	13	2.0	13	100	0	52	53	0	15	30	1.42
30208366--30208433	26	2.6	27	90	4	104	42	8	1	47	1.43
30208489--30208555	27	2.5	27	85	4	82	28	28	25	17	1.98
30208700--30208738	19	2.0	21	85	10	55	23	0	10	66	1.22
30208802--30208857	3	18.7	3	100	0	112	0	0	32	67	0.91
30209043--30209079	12	3.1	12	92	0	56	21	0	16	62	1.33
30209628--30209672	18	2.5	18	77	0	54	28	8	46	15	1.76
30215350--30215446	22	4.2	22	71	16	72	2	25	0	72	0.96
30215387--30215524	4	34.0	4	72	20	83	2	29	0	68	1.02
30215389--30215445	29	2.0	29	86	6	82	1	24	0	73	0.92
30215363--30215446	44	2.0	41	82	13	102	1	25	0	73	0.90
30215328--30215534	70	3.0	68	78	12	183	1	30	0	67	1.02
30215568--30215629	27	2.3	27	88	0	88	16	24	30	29	1.96
30236564--30236604	21	2.0	21	90	0	64	19	29	21	29	1.98
30240795--30240837	17	2.5	16	81	7	50	60	4	0	34	1.17
30247547--30247603	25	2.3	25	81	0	60	40	10	7	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30247649--30247701	20	2.7	20	81	0	61	37	20	5	35	1.77
30247851--30247941	23	3.8	24	81	12	82	30	15	26	27	1.96
30247873--30247941	23	3.0	23	87	4	86	31	14	27	26	1.95
30249358--30249450	29	3.2	29	81	6	116	20	27	13	37	1.91
30249369--30249455	29	3.0	29	91	0	138	18	31	12	37	1.88
30252285--30252315	7	4.4	7	100	0	62	70	0	0	29	0.87
30254737--30254787	3	16.7	3	87	4	75	39	0	0	60	0.97
30255103--30255357	130	2.0	130	96	0	474	42	5	9	43	1.58
30255220--30255532	146	2.1	146	85	4	414	40	4	11	43	1.60
30269641--30269709	25	2.6	26	90	6	104	40	8	0	50	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226