genome.fa.s24.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  94  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29473905--29473974	18	3.9	18	78	0	77	34	30	10	25	1.89
29473904--29473974	36	2.0	36	85	0	97	33	30	9	25	1.88
29479011--29479051	10	4.6	9	83	16	50	21	0	2	75	0.92
29479431--29479468	15	2.4	16	86	4	60	86	2	10	0	0.66
29479431--29479468	8	4.9	8	87	6	60	86	2	10	0	0.66
29480522--29480569	21	2.3	21	82	7	62	16	16	6	60	1.55
29482328--29484032	851	2.0	851	93	0	2948	33	16	19	30	1.94
29485977--29486002	11	2.4	11	100	0	52	34	7	0	57	1.27
29486006--29486047	13	3.2	13	80	16	50	21	0	4	73	1.01
29489857--29489906	20	2.5	20	83	9	66	62	4	0	34	1.14
29489981--29490022	19	2.1	21	82	8	52	54	9	2	33	1.46
29489814--29490044	120	1.9	120	80	3	268	51	13	2	32	1.55
29492245--29492272	3	9.3	3	100	0	56	64	0	0	35	0.94
29492658--29492703	19	2.5	18	82	6	56	45	6	2	45	1.41
29493745--29493797	27	1.9	28	88	3	81	66	0	5	28	1.15
29495637--29495695	25	2.5	24	83	8	84	33	0	6	59	1.24
29495637--29495700	23	2.7	22	81	13	74	34	1	7	56	1.38
29499236--29499384	40	3.7	40	80	0	163	39	20	18	21	1.92
29501385--29501440	25	2.2	26	87	9	89	50	0	1	48	1.11
29507749--29507791	15	3.2	15	69	30	51	46	0	0	53	1.00
29507809--29507900	27	3.3	27	69	19	73	68	5	25	1	1.17
29512285--29512341	24	2.4	24	96	0	105	19	5	28	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29525132--29525186	25	2.2	25	83	0	74	32	14	12	40	1.84
29526519--29526554	17	2.1	18	89	5	56	13	36	30	19	1.91
29539180--29539213	16	2.1	17	88	5	52	17	11	14	55	1.68
29543034--29543469	208	2.1	208	98	0	847	28	17	22	31	1.97
29543534--29543560	7	3.9	7	100	0	54	14	0	40	44	1.46
29543525--29543567	14	3.0	14	86	3	59	20	0	34	44	1.52
29543543--29543609	29	2.3	29	86	0	89	22	0	25	52	1.47
29543550--29543595	22	2.1	22	92	8	76	26	0	19	54	1.44
29543737--29543787	22	2.3	22	86	6	68	35	1	31	31	1.69
29543732--29543782	15	3.4	15	81	13	61	33	1	31	33	1.69
29543832--29543877	23	2.0	23	86	0	65	63	2	8	26	1.35
29543997--29544456	115	4.0	116	80	5	464	23	13	20	42	1.88
29544573--29544638	23	2.9	21	70	14	51	16	40	4	37	1.69
29546355--29546380	12	2.2	12	100	0	52	38	7	7	46	1.61
29546383--29546471	12	8.2	12	68	20	54	52	11	1	34	1.44
29546395--29547295	9	103.4	9	72	16	539	46	18	1	33	1.59
29546390--29546469	31	2.6	31	90	7	135	53	11	1	33	1.44
29546423--29546480	23	2.5	23	80	8	64	53	10	1	34	1.45
29546516--29546587	25	2.9	25	85	0	81	47	22	2	27	1.65
29546542--29546622	41	2.0	41	90	0	126	50	20	1	27	1.56
29546573--29546621	25	2.0	25	87	0	71	46	20	0	32	1.51
29546643--29546754	29	3.8	30	73	14	106	53	12	2	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29546449--29547237	34	23.3	34	72	13	398	47	18	1	32	1.58
29552460--29552567	54	2.0	54	100	0	216	42	9	24	24	1.83
29552832--29552882	21	2.5	20	81	9	57	33	13	45	7	1.73
29553315--29553478	85	1.9	84	87	3	240	26	22	18	32	1.97
29553312--29553481	42	4.0	42	86	4	225	27	22	18	31	1.97
29569060--29569750	346	2.0	351	85	6	943	35	11	19	33	1.88
29595936--29595965	6	4.8	6	95	4	51	33	0	0	66	0.92
29603810--29603893	43	2.0	43	92	0	141	26	28	16	28	1.97
29603812--29603906	43	2.2	43	86	3	129	27	28	20	24	1.99
29605884--29606081	44	4.6	43	76	9	154	28	13	25	32	1.94
29605884--29606083	42	4.6	44	73	16	118	28	13	25	33	1.93
29605926--29606082	85	1.8	85	81	8	194	27	12	25	34	1.92
29606012--29606092	43	1.9	41	85	9	110	27	12	25	34	1.92
29606600--29606637	16	2.4	16	86	8	51	31	0	15	52	1.43
29608609--29608639	12	2.6	12	100	0	62	16	0	51	32	1.44
29609841--29609897	26	2.2	26	84	9	71	42	29	15	12	1.84
29612665--29612773	27	4.1	26	84	3	137	44	20	16	19	1.87
29612669--29612802	27	5.0	26	80	9	128	41	18	17	21	1.90
29612668--29612770	53	1.9	53	88	0	152	44	19	15	20	1.86
29616082--29616106	4	6.2	4	100	0	50	24	0	0	76	0.80
29616604--29616643	21	1.9	21	85	10	55	35	7	0	57	1.27
29616926--29617018	44	2.1	43	82	2	105	50	3	7	38	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29616991--29617031	15	2.6	16	84	11	57	58	0	0	41	0.98
29625521--29625572	21	2.5	21	84	6	61	25	3	3	67	1.25
29625521--29625586	20	3.2	21	81	8	66	28	3	3	65	1.23
29630948--29630987	14	2.9	14	84	0	53	32	7	17	42	1.77
29630971--29631010	20	2.0	20	90	0	62	27	10	12	50	1.72
29630956--29631022	34	1.9	35	90	3	109	31	8	13	46	1.74
29631109--29631147	20	2.0	20	94	0	69	48	2	0	48	1.15
29631178--29631230	17	3.2	15	80	17	52	41	1	1	54	1.22
29631402--29631441	14	2.9	14	84	0	53	32	7	17	42	1.77
29634260--29634310	18	2.8	18	75	0	66	39	3	43	13	1.63
29634876--29634999	42	3.0	42	85	4	162	29	16	25	29	1.96
29637922--29637955	2	17.0	2	93	0	59	50	47	0	2	1.16
29640446--29640503	11	5.2	11	87	2	80	22	32	1	43	1.64
29640446--29640521	22	3.4	23	84	14	97	25	31	1	42	1.63
29640445--29640519	33	2.2	33	84	9	98	24	32	1	42	1.63
29640445--29640521	11	6.9	11	74	21	72	24	31	1	42	1.63
29641630--29641655	7	3.7	7	100	0	52	26	0	15	57	1.38
29642801--29642883	25	3.3	25	91	0	121	38	1	15	44	1.55
29642745--29642954	95	2.2	95	74	13	209	38	1	12	47	1.51
29646072--29646443	124	3.0	124	87	3	577	30	21	17	29	1.96
29651045--29651109	33	1.9	34	84	12	89	27	1	0	70	0.96
29651061--29651120	29	2.1	28	85	11	79	25	1	1	71	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29651957--29652001	21	2.2	21	84	7	58	46	22	22	8	1.79
29651972--29652127	42	3.7	42	80	0	177	48	17	17	16	1.81
29651972--29652127	21	7.4	21	72	0	105	48	17	17	16	1.81
29653727--29653773	19	2.5	19	96	3	87	57	0	4	38	1.18
29663385--29663426	21	2.0	21	81	9	50	64	4	0	30	1.14
29663474--29663530	30	1.9	30	82	10	73	68	5	0	26	1.11
29664959--29665002	11	3.7	11	80	16	52	54	2	2	40	1.25
29667955--29667985	7	4.4	7	100	0	62	61	0	12	25	1.32
29668359--29668523	82	2.1	77	81	13	183	43	10	18	27	1.83
29678379--29678469	45	2.0	45	97	0	173	41	10	13	34	1.79
29678379--29678451	24	3.2	24	62	31	59	38	10	13	36	1.80
29678633--29678664	10	3.0	11	90	9	57	37	0	0	62	0.95
29678704--29678739	18	2.0	18	100	0	72	33	0	0	66	0.92
29678970--29679005	16	2.2	16	90	0	54	27	27	2	41	1.70
29679382--29679412	9	3.4	9	90	0	53	25	12	22	38	1.90
29679465--29679501	18	2.1	18	89	0	56	48	13	10	27	1.75
29679715--29679774	30	2.0	31	86	3	86	20	40	0	40	1.52
29681528--29681567	21	1.9	21	85	10	55	27	2	12	57	1.48
29683057--29683089	12	2.8	12	100	0	66	33	6	0	60	1.21
29683204--29683305	27	3.7	26	72	18	73	36	5	2	54	1.40
29683347--29683421	27	2.9	24	82	9	78	36	8	1	54	1.38
29683181--29683458	148	1.9	143	91	5	450	33	6	3	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29683209--29683511	148	2.0	148	83	7	375	34	8	2	54	1.44
29685258--29685288	16	1.9	16	93	0	53	25	19	19	35	1.95
29689981--29690514	41	12.7	40	69	10	210	29	21	21	28	1.98
29689990--29690519	83	6.3	83	77	9	509	29	20	21	28	1.98
29689979--29690387	42	9.7	43	71	16	248	30	21	21	27	1.98
29690073--29690433	127	2.8	127	93	0	616	29	21	22	27	1.99
29691675--29691724	3	16.0	3	91	4	64	32	4	0	64	1.12
29691839--29691940	27	3.7	26	72	18	73	36	5	2	54	1.40
29691992--29692059	27	2.6	24	84	15	75	35	8	1	54	1.41
29691790--29692103	158	2.0	153	89	6	479	35	7	2	54	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226