genome.fa.s24.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  156  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48536220--48536378	75	2.1	75	97	0	300	28	10	13	48	1.74
48536716--48536788	23	3.3	22	75	14	62	28	2	4	64	1.26
48536733--48536794	22	2.9	22	73	20	58	32	1	4	61	1.27
48536830--48536886	23	2.4	24	77	11	64	40	1	3	54	1.28
48542169--48542194	3	8.7	3	100	0	52	30	0	0	69	0.89
48545359--48545384	1	26.0	1	100	0	52	100	0	0	0	0.00
48546922--48546947	1	26.0	1	100	0	52	0	0	0	100	0.00
48555327--48555369	21	2.0	22	86	4	61	48	4	2	44	1.36
48563574--48563663	27	3.4	27	78	1	74	37	24	17	20	1.93
48566727--48567066	172	2.0	171	93	0	581	47	16	12	23	1.80
48567542--48567579	19	2.0	20	89	5	60	60	5	5	28	1.40
48572118--48572174	28	2.0	28	96	0	105	33	10	14	42	1.79
48578575--48578646	28	2.6	27	82	8	81	18	1	30	50	1.55
48578593--48578653	28	2.2	28	84	0	77	16	3	34	45	1.63
48584725--48584764	20	2.0	20	95	0	71	32	15	10	42	1.79
48585274--48585308	18	1.9	18	88	0	52	60	2	2	34	1.26
48585931--48585978	20	2.3	20	82	3	60	60	4	6	29	1.40
48592436--48592492	23	2.5	23	97	0	105	31	15	28	24	1.96
48595668--48595727	30	2.0	30	100	0	120	40	20	3	36	1.69
48598348--48598382	16	2.1	18	89	10	56	40	22	0	37	1.55
48599275--48599414	41	3.5	40	71	4	129	41	16	20	21	1.90
48599275--48599433	81	2.0	82	83	3	205	41	18	19	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48599563--48599625	25	2.5	25	86	0	81	14	34	20	30	1.92
48599771--48599843	2	36.5	2	100	0	146	50	0	49	0	1.00
48601149--48601188	20	2.0	20	95	0	71	2	10	32	55	1.47
48603829--48603943	43	2.7	42	74	8	106	26	25	20	28	1.99
48605213--48605252	21	1.9	21	94	0	71	42	0	55	2	1.13
48605216--48605253	12	3.2	12	88	0	58	44	0	52	2	1.14
48616780--48616833	26	2.1	26	89	6	83	42	11	11	35	1.76
48620248--48620376	63	2.0	63	91	2	206	34	13	13	37	1.85
48620747--48620771	12	2.1	12	100	0	50	32	0	16	52	1.44
48622064--48622183	46	2.6	46	91	0	186	30	25	20	23	1.99
48622064--48622185	23	5.3	23	85	3	165	30	25	20	23	1.99
48624145--48624209	16	4.1	16	83	0	94	26	27	4	41	1.75
48624142--48624207	32	2.1	32	91	0	105	28	27	3	40	1.71
48632863--48632925	25	2.5	26	80	7	78	31	22	23	22	1.98
48641819--48642171	70	5.1	70	67	8	193	29	23	19	27	1.98
48641801--48642171	138	2.7	137	85	0	463	29	24	19	26	1.98
48642354--48642479	17	7.4	17	78	5	128	35	12	14	37	1.84
48642388--48642477	35	2.6	35	85	5	121	36	10	15	37	1.81
48642371--48642475	52	2.0	53	83	1	131	38	11	13	37	1.81
48647504--48647553	24	2.1	24	100	0	100	44	8	18	30	1.78
48648385--48648440	27	2.1	27	100	0	112	55	25	10	8	1.63
48648734--48648772	20	2.0	20	85	10	53	20	7	28	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48652925--48653178	27	9.4	27	78	8	232	43	16	20	18	1.88
48653362--48653420	26	2.2	26	82	8	66	16	25	20	37	1.93
48653376--48653426	26	2.0	26	96	0	93	13	23	25	37	1.92
48659526--48659554	15	1.9	15	100	0	58	58	6	20	13	1.58
48660671--48660774	48	2.1	50	78	7	115	52	3	2	40	1.34
48665318--48665364	6	7.8	6	100	0	94	34	34	0	31	1.58
48667397--48667422	12	2.2	12	100	0	52	7	15	30	46	1.74
48671580--48671646	10	6.5	10	76	6	62	34	2	0	62	1.10
48671580--48671651	31	2.3	31	80	9	83	36	2	0	61	1.11
48671604--48671646	21	2.1	20	91	4	68	32	2	0	65	1.06
48671574--48671646	11	6.9	11	76	7	71	35	2	0	61	1.10
48675183--48675210	13	2.2	13	100	0	56	21	7	21	50	1.72
48675422--48675456	18	1.9	18	100	0	70	62	2	0	34	1.10
48675419--48675493	26	3.0	26	84	7	66	58	1	0	40	1.06
48675453--48675496	12	3.5	12	76	11	52	50	0	0	50	1.00
48675443--48675495	26	2.0	26	100	0	106	54	0	0	45	0.99
48675469--48675742	138	2.0	138	94	1	487	49	5	7	38	1.53
48677685--48677787	49	2.1	48	87	5	145	32	8	10	48	1.68
48679223--48679298	28	2.9	27	75	7	75	42	0	2	55	1.14
48679336--48679365	15	1.9	16	93	6	53	50	0	6	43	1.28
48679381--48679437	26	2.1	28	87	9	82	43	0	1	54	1.10
48679597--48679630	17	2.0	17	94	0	59	41	2	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48679620--48679669	26	2.0	25	92	4	82	40	0	0	60	0.97
48679175--48679889	120	6.0	120	95	1	1253	42	0	4	52	1.28
48679624--48679795	7	24.7	7	62	22	51	41	0	2	55	1.19
48680106--48680153	16	3.0	16	87	0	69	25	29	4	41	1.74
48680659--48680739	20	4.0	20	69	15	58	65	3	2	28	1.22
48684544--48684634	44	2.1	44	91	0	146	46	10	13	29	1.77
48686940--48687502	114	4.9	113	74	10	414	30	18	22	28	1.97
48686937--48687502	229	2.5	228	79	7	565	30	18	22	28	1.97
48687852--48687899	7	6.7	7	76	4	51	16	0	39	43	1.48
48687850--48687890	15	2.9	14	82	7	55	19	0	36	43	1.51
48688269--48688304	14	2.3	17	86	13	51	55	0	2	41	1.14
48689070--48689156	44	2.0	44	86	8	124	26	28	11	33	1.91
48690796--48690876	35	2.3	35	95	0	144	33	4	3	58	1.37
48690895--48690950	16	3.3	17	80	9	78	37	16	3	42	1.65
48690900--48690972	34	2.3	33	86	11	100	41	16	2	39	1.63
48691017--48691217	24	9.3	22	68	21	74	48	18	1	31	1.59
48691148--48691201	12	4.7	11	80	13	56	51	14	1	31	1.53
48691134--48691218	24	4.0	22	81	11	88	52	17	1	28	1.52
48691159--48691218	12	5.7	10	88	5	68	55	15	0	30	1.41
48691224--48691367	34	4.5	33	66	17	86	52	18	2	26	1.56
48691353--48691380	12	2.3	12	100	0	56	53	14	0	32	1.41
48691171--48691473	95	3.3	93	80	9	338	52	16	2	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48691287--48691416	37	3.3	37	70	21	109	53	15	3	28	1.57
48691441--48691467	12	2.2	12	100	0	54	51	14	0	33	1.43
48691285--48691502	83	2.6	83	86	3	283	51	16	3	28	1.61
48691452--48691518	19	3.7	19	79	18	88	50	17	1	29	1.55
48691452--48691552	9	11.4	9	71	19	72	48	18	1	30	1.59
48691483--48691563	16	4.9	16	76	11	76	48	18	3	29	1.65
48691487--48691563	25	3.1	25	84	0	118	46	19	3	29	1.68
48697013--48697102	21	4.4	21	69	18	73	40	17	40	2	1.62
48697538--48697823	42	6.8	42	86	5	350	24	24	20	30	1.98
48697533--48697823	85	3.5	85	84	8	348	24	24	20	30	1.98
48697538--48697828	128	2.3	128	85	6	389	24	24	19	31	1.98
48697984--48698024	21	2.0	21	90	0	64	53	9	4	31	1.55
48704161--48704227	11	6.4	11	74	20	63	56	0	1	41	1.08
48704152--48704285	40	3.4	40	86	2	198	61	0	0	38	1.02
48709647--48709703	26	2.2	26	100	0	114	49	15	21	14	1.80
48709647--48709719	26	2.8	26	91	2	92	49	15	19	16	1.80
48709517--48709692	95	1.9	93	95	1	300	48	18	13	18	1.80
48714569--48714617	25	2.0	25	83	0	62	38	0	16	44	1.48
48720524--48720561	19	2.1	17	90	9	58	31	0	5	63	1.17
48721433--48721470	19	2.0	19	90	10	60	39	2	5	52	1.38
48721886--48721916	16	2.0	16	93	6	55	58	6	6	29	1.48
48724400--48724432	6	5.5	6	100	0	66	15	33	0	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48728452--48728593	62	2.3	62	84	4	189	24	27	25	22	2.00
48729113--48729153	12	3.2	12	83	12	55	85	0	7	7	0.75
48729531--48729592	24	2.6	24	71	19	58	38	16	6	38	1.74
48729601--48729669	34	2.0	34	94	0	120	31	20	14	33	1.92
48729682--48729748	27	2.5	27	87	4	91	31	32	17	17	1.94
48729808--48729885	15	4.9	15	76	9	66	26	28	19	25	1.99
48731118--48731143	5	5.2	5	100	0	52	42	19	19	19	1.90
48731897--48731956	30	2.0	30	83	3	75	41	0	38	20	1.52
48732170--48732224	9	6.1	9	95	0	101	30	10	12	45	1.77
48732268--48732310	18	2.3	18	92	4	68	34	18	13	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226