genome.fa.s24.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  151  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47372409--47372540	28	4.9	28	78	9	130	59	6	12	21	1.55
47372436--47372554	28	4.4	28	81	6	122	58	7	14	19	1.59
47372824--47373029	84	2.4	84	88	6	308	21	25	20	32	1.97
47372824--47373041	43	5.1	41	86	6	285	22	26	19	31	1.98
47374508--47374606	28	3.5	29	83	6	114	30	27	15	27	1.96
47380708--47380892	40	4.6	39	80	6	194	24	21	27	25	1.99
47380708--47380892	79	2.3	81	82	7	218	24	21	27	25	1.99
47380709--47380925	79	2.7	78	79	11	192	26	21	27	25	1.99
47384753--47384851	28	3.5	29	83	6	114	30	27	15	27	1.96
47386878--47386932	21	2.6	21	88	0	83	5	45	14	34	1.68
47390012--47390472	232	2.0	234	85	3	635	29	19	15	36	1.92
47390246--47390991	270	2.8	265	81	6	854	31	18	14	34	1.91
47391344--47391394	22	2.3	23	86	3	68	35	41	1	21	1.65
47391352--47391415	29	2.2	29	88	0	92	34	42	1	21	1.63
47391352--47391404	14	3.7	15	75	7	56	33	41	1	22	1.65
47391561--47391636	36	2.1	36	83	11	95	39	0	6	53	1.27
47392588--47392738	83	1.8	82	84	2	205	37	24	20	17	1.93
47392588--47392758	41	4.2	41	78	7	159	38	25	20	16	1.93
47392758--47393085	123	2.7	123	87	1	451	25	25	18	29	1.98
47393227--47393259	15	2.1	17	88	11	52	30	6	21	42	1.77
47394487--47394513	3	9.0	3	100	0	54	33	0	0	66	0.92
47396797--47396850	28	1.9	28	88	0	81	27	29	1	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47397786--47397828	23	1.9	22	85	4	59	39	4	4	51	1.44
47398059--47398101	23	2.0	20	86	13	59	74	6	2	16	1.14
47400080--47400126	20	2.3	20	96	0	85	38	8	38	14	1.77
47404814--47404851	19	2.0	19	94	0	67	26	50	5	18	1.68
47406330--47406471	29	5.0	27	76	12	124	21	16	7	54	1.66
47406330--47406464	27	4.8	28	78	12	141	21	16	7	54	1.66
47406330--47406464	28	4.8	27	80	8	144	21	16	7	54	1.66
47413654--47413737	42	2.0	43	85	2	116	32	17	15	34	1.92
47415857--47415994	40	3.5	40	85	0	168	13	20	28	37	1.91
47441967--47442011	21	2.1	20	84	12	54	37	0	6	55	1.26
47443188--47443218	14	2.1	15	94	5	55	54	0	0	45	0.99
47443904--47444101	106	1.9	106	84	7	267	45	14	11	28	1.79
47450397--47450473	30	2.8	27	79	12	84	31	15	7	45	1.75
47450409--47450471	30	2.1	30	96	0	117	28	15	7	47	1.74
47451143--47451196	22	2.5	22	75	0	54	46	5	5	42	1.50
47453967--47454001	3	11.7	3	87	0	52	28	0	37	34	1.58
47453967--47454001	15	2.3	15	100	0	70	28	0	37	34	1.58
47463709--47464637	88	10.6	88	85	3	1106	28	18	24	28	1.98
47463883--47464019	44	3.1	43	67	8	114	27	17	26	29	1.98
47463709--47464588	351	2.5	352	87	2	1248	28	18	24	27	1.98
47464238--47464377	44	3.2	44	67	15	117	29	20	22	27	1.98
47464266--47464402	44	3.1	45	65	8	109	33	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47466077--47466118	19	2.2	20	80	16	54	28	7	0	64	1.20
47475894--47475923	12	2.6	11	90	10	51	0	6	30	63	1.20
47476821--47476877	26	2.1	28	78	12	66	52	0	1	45	1.11
47477837--47477929	47	1.9	49	82	10	120	34	25	22	17	1.96
47479388--47479450	17	3.6	17	84	2	81	20	0	6	73	1.05
47481154--47481197	22	2.0	21	82	4	52	38	11	9	40	1.73
47482074--47482142	24	2.9	24	73	16	70	31	15	10	42	1.81
47482074--47482215	48	3.0	48	77	1	133	27	17	14	40	1.88
47482089--47482192	24	4.3	23	68	15	61	27	18	13	40	1.88
47483626--47483679	21	2.6	21	100	0	108	18	35	27	18	1.94
47483667--47483742	21	3.6	21	72	13	75	14	26	30	28	1.95
47487386--47487422	18	2.1	18	100	0	74	27	16	16	40	1.89
47489967--47490042	26	3.0	26	86	1	109	40	5	17	36	1.72
47491423--47491451	11	2.6	11	100	0	58	13	17	27	41	1.87
47492852--47492975	28	4.5	28	75	11	105	29	15	4	50	1.65
47492963--47493063	28	3.7	27	77	5	105	28	18	1	50	1.58
47492818--47493065	56	4.5	55	75	11	175	28	17	3	50	1.62
47510002--47510065	32	2.0	32	100	0	128	37	12	18	31	1.88
47511507--47511549	22	2.0	22	85	0	59	53	2	2	41	1.26
47511659--47511706	26	2.0	22	84	15	60	39	6	14	39	1.71
47512684--47512772	47	1.9	46	100	0	169	16	37	16	29	1.92
47519304--47519335	12	2.6	12	95	5	55	50	0	3	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47520622--47520670	16	3.1	16	71	11	55	32	8	14	44	1.74
47524534--47524642	49	2.2	52	83	5	134	29	37	16	16	1.91
47527673--47527880	42	5.0	42	78	8	201	37	24	15	21	1.93
47527673--47527880	84	2.5	84	94	0	362	37	24	15	21	1.93
47535123--47535157	14	2.6	14	90	4	54	71	2	5	20	1.19
47535118--47535157	13	3.0	13	88	3	53	62	2	7	27	1.35
47547136--47547169	5	6.8	5	100	0	68	41	0	17	41	1.50
47547247--47547288	18	2.3	18	84	11	59	61	4	2	30	1.29
47547156--47547623	239	2.0	233	82	11	565	46	6	10	36	1.64
47548229--47548347	41	2.9	41	100	0	238	19	21	31	26	1.97
47548355--47548495	72	2.0	72	88	0	210	26	22	25	24	2.00
47548399--47549017	114	5.3	114	81	6	648	26	21	25	26	2.00
47548652--47548677	13	2.0	13	100	0	52	61	23	7	7	1.49
47548427--47548902	242	2.0	241	86	1	675	26	21	25	26	2.00
47552574--47552634	16	4.0	16	77	12	74	45	14	0	39	1.45
47552576--47552638	9	7.0	9	71	20	51	46	15	0	38	1.47
47552639--47552692	17	3.1	18	79	17	69	38	0	1	59	1.08
47552647--47552676	15	2.0	15	93	0	51	40	0	3	56	1.16
47552662--47552700	19	2.0	20	95	5	71	43	0	0	56	0.99
47552702--47553075	18	18.4	20	66	23	76	50	18	0	29	1.53
47552719--47552828	31	3.4	31	77	13	107	47	19	0	33	1.50
47552816--47553308	9	57.6	9	70	17	257	48	18	1	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47552826--47552877	12	4.3	12	80	0	59	50	19	1	28	1.58
47552826--47552884	24	2.5	24	86	5	77	50	18	1	28	1.56
47552856--47552996	40	3.2	48	67	23	137	53	16	1	28	1.51
47552899--47553032	34	3.5	34	68	27	90	55	17	1	25	1.51
47552845--47553030	83	2.3	83	94	2	322	54	17	1	26	1.50
47552874--47553308	16	26.2	16	70	17	191	49	18	1	31	1.56
47553009--47553304	50	5.8	50	77	15	302	45	18	1	34	1.58
47553013--47553140	55	2.3	56	90	2	204	47	18	0	32	1.54
47553013--47553308	25	12.0	25	82	7	251	45	18	1	34	1.58
47558808--47558856	21	2.3	21	89	0	71	34	18	38	8	1.80
47559205--47559432	43	5.3	43	80	4	228	32	17	24	25	1.97
47559482--47559524	21	2.0	22	81	4	52	41	25	20	11	1.86
47560154--47560338	34	5.4	34	86	1	235	28	16	24	30	1.96
47560164--47560294	69	1.9	70	91	1	219	27	16	25	29	1.97
47560413--47560458	24	1.9	24	95	0	83	34	17	13	34	1.88
47577991--47578033	20	2.2	20	100	0	86	20	9	11	58	1.61
47580816--47581056	42	5.7	41	75	5	203	26	18	20	34	1.96
47586665--47586701	7	5.0	7	87	12	56	29	0	16	54	1.43
47586672--47587151	9	54.4	9	76	11	444	33	0	15	50	1.49
47590709--47590961	115	2.2	113	80	7	287	26	21	18	33	1.97
47590971--47591289	113	2.8	112	81	5	329	24	23	20	31	1.98
47591208--47591364	76	2.1	75	80	3	172	26	24	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47592782--47592813	15	2.0	17	88	11	50	25	0	9	65	1.22
47595025--47595066	11	3.7	11	83	3	57	21	33	2	42	1.66
47595025--47595079	22	2.4	23	81	6	67	21	30	3	43	1.70
47596969--47597008	18	2.2	18	86	0	53	17	30	7	45	1.76
47597475--47598188	22	32.3	22	74	15	523	47	26	0	25	1.56
47597477--47598128	67	9.8	67	78	13	534	47	26	0	25	1.55
47597701--47597743	15	3.0	15	90	6	63	44	44	0	11	1.40
47597702--47597743	7	6.0	7	89	8	59	42	45	0	11	1.41
47597776--47597822	14	3.2	14	82	8	58	48	29	0	21	1.50
47597791--47598188	68	6.0	64	83	7	286	46	25	0	27	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226