genome.fa.s24.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  31  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10747128--10747173	24	1.9	24	90	0	74	36	4	8	50	1.53
10747680--10747741	30	2.1	30	81	0	70	35	24	9	30	1.87
10757135--10757185	23	2.2	23	92	0	84	39	0	11	49	1.40
10759638--10759688	24	2.1	24	88	0	75	35	17	29	17	1.93
10759651--10759714	24	2.7	25	81	13	73	39	17	28	15	1.90
10759705--10759770	26	2.6	25	78	7	69	39	22	19	18	1.92
10763722--10763766	20	2.2	20	88	7	65	28	0	4	66	1.11
10764867--10764904	3	13.0	3	94	5	69	65	0	34	0	0.93
10775009--10775060	2	26.0	2	100	0	104	0	50	0	50	1.00
10791189--10791246	30	1.9	30	85	0	80	43	1	24	31	1.64
10791458--10791489	13	2.5	13	94	0	55	31	0	12	56	1.37
10791583--10791824	50	4.7	50	86	4	297	26	24	29	19	1.99
10791583--10791832	100	2.4	103	88	6	364	26	24	29	20	1.99
10797924--10798172	50	4.8	50	85	4	284	20	29	24	26	1.99
10797923--10798172	100	2.4	104	88	6	357	20	29	24	26	1.99
10798267--10798298	13	2.5	13	94	0	55	56	12	0	31	1.37
10798510--10798567	30	1.9	30	89	0	89	31	24	3	41	1.71
10808709--10808751	18	2.4	18	88	7	61	53	0	0	46	1.00
10828871--10828918	26	1.9	24	87	8	69	39	0	0	60	0.97
10840037--10840099	30	2.1	30	80	11	76	36	1	0	61	1.05
10840090--10840149	11	4.9	11	74	21	57	45	1	1	51	1.21
10840057--10840165	39	2.7	41	83	8	152	38	1	0	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10840053--10840119	30	2.2	29	82	10	73	35	2	0	61	1.12
10840137--10840185	22	2.2	21	86	10	71	36	0	4	59	1.17
10843041--10843084	12	3.7	12	84	0	61	40	22	34	2	1.67
10843041--10843082	18	2.3	18	83	0	66	42	21	33	2	1.66
10846935--10846982	25	1.9	25	86	0	69	56	4	2	37	1.30
10854931--10855573	91	7.0	91	73	11	295	32	9	11	46	1.72
10854940--10856428	89	16.6	87	71	12	513	29	10	12	47	1.75
10855663--10856428	88	8.7	88	73	13	476	27	11	13	47	1.77
10854737--10856428	89	18.8	87	71	15	435	30	10	12	47	1.74
10857409--10857449	21	2.0	21	85	9	57	41	2	0	56	1.13
10858210--10858241	16	2.0	16	100	0	64	0	18	0	81	0.70
10860920--10861072	75	2.0	75	94	0	270	35	16	19	28	1.93
10868555--10868755	102	2.0	102	90	0	321	29	27	21	21	1.98
10868657--10868830	75	2.3	75	91	0	285	32	27	18	20	1.97
10868521--10868852	177	1.9	177	93	0	574	30	26	21	21	1.98
10869194--10869251	30	1.9	30	82	0	71	31	22	6	39	1.80
10875897--10876229	102	3.3	102	94	0	585	30	28	20	20	1.98
10879963--10880014	24	2.2	24	82	6	61	50	3	3	42	1.39
10894568--10894606	18	2.2	17	86	13	53	33	0	20	46	1.51
10894832--10894904	23	3.2	23	88	0	110	27	21	21	28	1.99
10895376--10895430	16	3.4	16	84	0	74	40	7	23	29	1.81
10895412--10895504	44	2.1	44	92	6	152	33	4	25	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10895612--10895740	56	2.3	56	80	9	145	51	4	0	43	1.28
10896954--10897029	38	2.0	38	92	2	127	46	19	18	15	1.85
10899748--10899883	49	2.8	49	89	2	211	27	13	25	33	1.94
10903606--10903736	41	3.2	41	85	0	145	29	19	24	27	1.98
10907122--10907152	9	3.3	9	91	8	53	0	12	0	87	0.55
10913467--10913704	119	1.9	119	81	8	278	28	7	10	54	1.61
10914296--10914333	5	7.6	5	100	0	76	21	21	39	18	1.93
10921847--10921985	68	2.0	69	90	1	217	46	10	17	24	1.80
10924135--10924163	15	1.9	15	100	0	58	48	6	3	41	1.47
10931064--10931103	20	2.0	20	90	4	64	40	0	0	60	0.97
10931476--10931534	13	4.8	13	70	14	54	49	0	5	45	1.24
10951040--10951385	46	8.2	45	79	14	341	34	14	21	29	1.93
10951076--10951267	36	5.0	36	81	13	222	36	14	20	28	1.91
10951040--10951359	82	3.9	81	77	17	354	35	14	21	28	1.92
10951076--10951313	119	2.0	118	91	2	388	36	14	21	28	1.92
10958115--10958414	46	6.6	46	92	1	489	32	15	21	30	1.95
10959578--10959903	46	7.6	45	87	8	395	28	21	14	35	1.92
10959759--10959862	36	2.9	36	95	0	181	31	19	10	38	1.86
10967875--10967905	5	6.2	5	100	0	62	61	0	0	38	0.96
10967974--10968006	7	4.7	7	96	0	57	81	15	0	3	0.80
10974609--10974645	12	3.2	12	92	3	58	91	0	8	0	0.41
10974611--10974647	18	2.1	18	89	0	56	89	0	10	0	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10980036--10980114	39	2.0	40	95	2	142	31	1	10	56	1.40
10988461--10988557	47	2.1	47	100	0	194	31	14	25	27	1.95
10997544--10997580	16	2.3	16	100	0	74	37	5	35	21	1.77
10997560--10997650	46	2.0	46	91	4	150	26	4	29	39	1.75
10997560--10997667	46	2.5	44	84	11	136	28	3	30	37	1.75
10997809--10997847	17	2.5	15	84	15	60	61	0	0	38	0.96
10997814--10997847	17	2.0	17	100	0	68	58	0	0	41	0.98
10997880--10997919	20	2.0	21	85	5	55	60	5	0	35	1.19
10997771--10997966	54	3.4	54	71	17	144	54	3	1	41	1.23
10998009--10998072	32	2.0	32	81	0	74	50	1	0	48	1.10
10999412--10999515	49	2.1	49	87	0	145	50	9	8	30	1.65
11001654--11001687	12	2.8	12	81	0	50	55	20	23	0	1.43
11002754--11002798	22	2.0	22	83	12	56	51	2	8	37	1.46
11003615--11003639	13	1.9	13	100	0	50	32	8	40	20	1.81
11005564--11005616	23	2.4	21	79	14	61	62	0	0	37	0.96
11005567--11005614	16	2.8	16	79	14	51	66	0	0	33	0.92
11006412--11006473	29	2.2	28	85	2	79	45	4	6	43	1.51
11009143--11009184	18	2.3	18	80	8	50	66	4	2	26	1.23
11010571--11010604	12	2.7	13	86	9	52	58	0	0	41	0.98
11010585--11010637	25	2.0	27	85	7	74	47	3	3	45	1.39
11010978--11011028	22	2.3	22	100	0	102	27	33	0	39	1.57
11011000--11011111	51	2.2	51	93	0	188	28	27	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11011127--11011177	10	5.1	10	76	6	50	31	0	0	68	0.90
11011114--11011177	30	2.1	31	94	2	112	34	0	1	64	1.03
11013196--11013247	21	2.5	21	100	0	104	44	34	17	3	1.67
11013362--11013431	25	2.7	25	80	4	77	44	2	14	38	1.60
11013423--11013458	18	2.0	18	100	0	72	50	22	0	27	1.50
11013434--11013651	29	7.9	29	70	20	155	46	23	0	29	1.52
11013463--11013782	47	7.1	47	75	22	298	47	23	0	28	1.52
11013492--11013747	18	14.3	18	73	19	216	48	22	0	28	1.51
11013463--11013846	178	2.0	189	86	11	540	47	25	0	27	1.53
11013724--11013875	29	4.7	35	79	18	202	44	30	0	25	1.55
11013724--11013875	64	2.4	64	95	0	277	44	30	0	25	1.55
11013844--11013929	23	3.7	23	76	14	95	46	24	0	29	1.53
11013449--11013927	164	2.9	168	73	16	441	46	25	0	27	1.53
11013823--11013928	47	2.3	47	93	0	176	46	24	0	29	1.53
11013852--11013887	18	2.0	18	94	0	63	50	19	0	30	1.48
11013939--11014030	26	3.4	26	67	14	78	40	11	7	40	1.71
11013924--11014536	55	11.0	54	87	9	511	38	8	5	47	1.59
11014070--11014104	18	1.9	18	94	0	61	37	8	2	51	1.47
11013946--11014536	56	10.5	56	87	8	674	38	8	5	47	1.58
11014126--11014160	18	1.9	18	94	0	61	37	8	2	51	1.47
11014181--11014217	10	3.7	10	96	0	65	37	10	0	51	1.37
11014239--11014273	18	1.9	18	94	0	61	37	8	2	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11014257--11014377	38	3.5	37	68	21	116	36	7	4	51	1.52
11014295--11014339	10	4.7	10	81	10	58	37	8	2	51	1.46
11014305--11014339	18	1.9	18	94	0	61	37	8	2	51	1.47
11014070--11014677	235	2.6	235	89	8	959	38	7	5	49	1.53
11014520--11014574	10	5.7	10	82	8	69	38	7	1	52	1.40
11014465--11014630	75	2.2	76	91	3	275	36	7	4	51	1.50
11014483--11014612	38	3.4	38	74	5	138	36	7	3	52	1.49
11014540--11014669	56	2.3	57	90	1	199	39	6	5	49	1.51
11018212--11018460	50	4.8	50	85	4	284	20	29	24	26	1.99
11018211--11018460	100	2.4	104	88	6	357	20	29	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226